bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
164,496 sequences; 82,071,388 total letters
Query= Eten_2527_orf1
Length=148
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_047610 snRNP protein Lsm5, putative ; K12624 U6 snR... 180 2e-45
tpv:TP01_0806 U6 small nuclear ribonucleoprotein E; K12624 U6 ... 125 4e-29
ath:AT5G48870 SAD1; SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1)... 121 8e-28
cpv:cgd7_4580 U6 snRNA-associated Sm-like protein LSm5. SM dom... 121 1e-27
cel:F28F8.3 lsm-5; LSM Sm-like protein family member (lsm-5); ... 120 2e-27
bbo:BBOV_IV009630 23.m05873; snRNP Sm-like protein; K12624 U6 ... 119 4e-27
dre:563948 zgc:171959; K12624 U6 snRNA-associated Sm-like prot... 117 2e-26
mmu:66373 Lsm5, 2010208O10Rik, 2310034K10Rik; LSM5 homolog, U6... 116 2e-26
mmu:100044729 u6 snRNA-associated Sm-like protein LSm5-like; K... 116 2e-26
xla:447076 lsm5; LSM5 homolog, U6 small nuclear RNA associated... 116 3e-26
pfa:PF14_0411 small nuclear ribonucleoprotein, putative; K1262... 106 2e-23
hsa:23658 LSM5, FLJ12710, YER146W; LSM5 homolog, U6 small nucl... 87.0 2e-17
sce:YER146W LSM5; Lsm (Like Sm) protein; part of heteroheptame... 73.6 2e-13
cel:Y62E10A.12 lsm-3; LSM Sm-like protein family member (lsm-3... 50.8 2e-06
ath:AT1G21190 small nuclear ribonucleoprotein, putative / snRN... 50.1 3e-06
ath:AT4G30330 small nuclear ribonucleoprotein E, putative / sn... 50.1 3e-06
ath:AT1G76860 small nuclear ribonucleoprotein, putative / snRN... 50.1 3e-06
mmu:67678 Lsm3, 1010001J12Rik, 2610005D18Rik, 6030401D18Rik, S... 49.7 3e-06
hsa:27258 LSM3, SMX4, USS2, YLR438C; LSM3 homolog, U6 small nu... 49.7 3e-06
xla:100049097 lsm3; LSM3 homolog, U6 small nuclear RNA associa... 49.3 4e-06
tgo:TGME49_075750 small nuclear ribonucleoprotein E, putative ... 48.9 5e-06
bbo:BBOV_IV002640 21.m02844; small nuclear ribonucleoprotein E... 48.1 9e-06
xla:443996 snrpe; small nuclear ribonucleoprotein polypeptide ... 47.0 2e-05
tpv:TP03_0386 small nuclear ribonucleoprotein; K11097 small nu... 46.6 3e-05
mmu:20643 Snrpe, AL022645, C76690, SME; small nuclear ribonucl... 45.8 5e-05
hsa:6635 SNRPE, B-raf, SME, Sm-E; small nuclear ribonucleoprot... 45.8 5e-05
dre:393979 snrpe, MGC56682, zgc:56682; small nuclear ribonucle... 45.4 6e-05
pfa:MAL13P1.253 small nuclear ribonucleoprotein, putative; K11... 45.4 6e-05
tgo:TGME49_098970 LSM domain-containing protein ; K12622 U6 sn... 45.1 8e-05
cpv:cgd7_690 small nuclear ribonucleoprotein ; K12622 U6 snRNA... 45.1 8e-05
xla:414679 naa38, MGC82379, lsm8; N(alpha)-acetyltransferase 3... 44.7 1e-04
mmu:76522 Naa38, 2010003I05Rik, AW214405, Lsm8; N(alpha)-acety... 44.3 2e-04
hsa:51691 NAA38, FLJ33242, LSM8; N(alpha)-acetyltransferase 38... 44.3 2e-04
xla:443926 MGC80249 protein; K11097 small nuclear ribonucleopr... 43.9 2e-04
cel:ZK593.7 lsm-7; LSM Sm-like protein family member (lsm-7); ... 43.9 2e-04
cpv:cgd1_2910 hypothetical protein ; K11086 small nuclear ribo... 43.5 3e-04
ath:AT2G03870 small nuclear ribonucleoprotein, putative / snRN... 43.5 3e-04
tgo:TGME49_013410 small nuclear ribonucleoprotein F, putative ... 42.4 5e-04
tpv:TP02_0362 small nuclear ribonucleoprotein B; K11086 small ... 41.6 9e-04
ath:AT1G65700 small nuclear ribonucleoprotein, putative / snRN... 41.2 0.001
cel:F40F8.9 lsm-1; LSM Sm-like protein family member (lsm-1); ... 41.2 0.001
cpv:cgd4_1660 small nuclear ribonucleoprotein ; K11097 small n... 41.2 0.001
bbo:BBOV_III006010 17.m07530; Sm domain containing protein; K1... 40.8 0.001
ath:AT2G18740 small nuclear ribonucleoprotein E, putative / sn... 40.8 0.002
mmu:20638 Snrpb, AL024368, AU018828, SM-B, SM11, SMB, SNRNP-B;... 40.8 0.002
hsa:6628 SNRPB, COD, SNRPB1, Sm-B/B', SmB/B', SmB/SmB', snRNP-... 40.8 0.002
cel:Y71F9B.4 snr-7; Small Nuclear Ribonucleoprotein family mem... 40.8 0.002
cel:Y73B6BL.32 lsm-8; LSM Sm-like protein family member (lsm-8... 40.4 0.002
sce:YLR438C-A LSM3, SMX4, USS2; Lsm (Like Sm) protein; part of... 40.4 0.002
bbo:BBOV_IV005760 23.m05936; small nuclear ribonucleoprotein F... 40.0 0.003
> tgo:TGME49_047610 snRNP protein Lsm5, putative ; K12624 U6 snRNA-associated
Sm-like protein LSm5
Length=119
Score = 180 bits (456), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 79/114 (69%), Positives = 101/114 (88%), Gaps = 0/114 (0%)
Query 35 AASSSGGSGAPSSAGVVSGGPSYLPLALVDKCVGSRVWVIMKGDKEIAGTLRGFDDYVNM 94
+A++ + AP+++GVVSGGPSYLPLALVDKC+GSR+W+IMKGDKE+AGTLRGFDD+VNM
Sbjct 2 SAAAPKATSAPATSGVVSGGPSYLPLALVDKCIGSRMWIIMKGDKELAGTLRGFDDFVNM 61
Query 95 VLDDVTEFSFTAQGVKKTHLETILLNGNNVSILVPGGDPEEAQNASAPAEAARS 148
VLDDVTE++FT GVKKT L++ILLNGN++++LVPGGDPEEAQ A + AE +
Sbjct 62 VLDDVTEYTFTPTGVKKTKLQSILLNGNSITMLVPGGDPEEAQQAESVAETGEA 115
> tpv:TP01_0806 U6 small nuclear ribonucleoprotein E; K12624 U6
snRNA-associated Sm-like protein LSm5
Length=90
Score = 125 bits (315), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 53/81 (65%), Positives = 67/81 (82%), Gaps = 0/81 (0%)
Query 57 YLPLALVDKCVGSRVWVIMKGDKEIAGTLRGFDDYVNMVLDDVTEFSFTAQGVKKTHLET 116
YLPLAL+DKC+GS++W+IMK DKEI GTLRGFDDY+NMVL+DV ++SF+ GVK T L
Sbjct 10 YLPLALIDKCLGSKIWIIMKNDKEITGTLRGFDDYMNMVLEDVVDYSFSPDGVKTTELND 69
Query 117 ILLNGNNVSILVPGGDPEEAQ 137
L+NGNNV++LVPGG P +
Sbjct 70 ALVNGNNVAMLVPGGKPTNVK 90
> ath:AT5G48870 SAD1; SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT
1); RNA binding; K12624 U6 snRNA-associated Sm-like protein
LSm5
Length=88
Score = 121 bits (303), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 51/80 (63%), Positives = 67/80 (83%), Gaps = 0/80 (0%)
Query 58 LPLALVDKCVGSRVWVIMKGDKEIAGTLRGFDDYVNMVLDDVTEFSFTAQGVKKTHLETI 117
LP L+D+C+GS++WVIMKGDKE+ G L+GFD YVNMVL+DVTE+ TA+G + T L+ I
Sbjct 9 LPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKLDQI 68
Query 118 LLNGNNVSILVPGGDPEEAQ 137
LLNGNN++ILVPGG PE+ +
Sbjct 69 LLNGNNIAILVPGGSPEDGE 88
> cpv:cgd7_4580 U6 snRNA-associated Sm-like protein LSm5. SM domain
; K12624 U6 snRNA-associated Sm-like protein LSm5
Length=121
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/119 (53%), Positives = 77/119 (64%), Gaps = 19/119 (15%)
Query 28 NSSSSNTAASSSGGSGAPSSAGVVSGGPSYLPLALVDKCVGSRVWVIMKGDKEIAGTLRG 87
N S A S GGS GG LPLAL+DKC+G+R++V+MKGDKE +G LRG
Sbjct 5 NYMSETPANKSQGGSNQ-------KGGNIILPLALIDKCIGNRIYVVMKGDKEFSGVLRG 57
Query 88 FDDYVNMVLDDVTEFSFTAQ------GVKK------THLETILLNGNNVSILVPGGDPE 134
FD+YVNMVLDDV E+ F A G KK LETILL+GNNV++LVPGGDP+
Sbjct 58 FDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGNNVAMLVPGGDPD 116
> cel:F28F8.3 lsm-5; LSM Sm-like protein family member (lsm-5);
K12624 U6 snRNA-associated Sm-like protein LSm5
Length=91
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 53/80 (66%), Positives = 67/80 (83%), Gaps = 1/80 (1%)
Query 56 SYLPLALVDKCVGSRVWVIMKGDKEIAGTLRGFDDYVNMVLDDVTEFSFTAQGVKKTHLE 115
+ LPL L+DKC+GS++WVIMK DKEI GTL GFDDYVNMVL+DV E+ TA G + T L+
Sbjct 11 TLLPLELIDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTADGKRMTKLD 70
Query 116 TILLNGNNVSILVPGGD-PE 134
TILLNGN++++LVPGG+ PE
Sbjct 71 TILLNGNHITMLVPGGEGPE 90
> bbo:BBOV_IV009630 23.m05873; snRNP Sm-like protein; K12624 U6
snRNA-associated Sm-like protein LSm5
Length=87
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 49/80 (61%), Positives = 66/80 (82%), Gaps = 0/80 (0%)
Query 51 VSGGPSYLPLALVDKCVGSRVWVIMKGDKEIAGTLRGFDDYVNMVLDDVTEFSFTAQGVK 110
+ G YLPLALVDKC+G++VW+IMKG+KEI G LRGFDDY+N+VLDDVTE++F GV+
Sbjct 4 IESGACYLPLALVDKCLGTKVWIIMKGEKEITGVLRGFDDYMNVVLDDVTEYTFKPTGVE 63
Query 111 KTHLETILLNGNNVSILVPG 130
T L+ L+NG N++++VPG
Sbjct 64 TTELKDALVNGTNIAMIVPG 83
> dre:563948 zgc:171959; K12624 U6 snRNA-associated Sm-like protein
LSm5
Length=91
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/89 (60%), Positives = 70/89 (78%), Gaps = 2/89 (2%)
Query 48 AGVVSGGPS-YLPLALVDKCVGSRVWVIMKGDKEIAGTLRGFDDYVNMVLDDVTEFSFTA 106
A + + PS LPL LVDKC+GSR+ ++MK DKEI GTL GFDD+VNMVL+DVTEF T
Sbjct 2 AAITATNPSQLLPLELVDKCIGSRIHIVMKNDKEIVGTLLGFDDFVNMVLEDVTEFEITP 61
Query 107 QGVKKTHLETILLNGNNVSILVPGGD-PE 134
+G + T L+ ILLNGNN+++L+PGG+ PE
Sbjct 62 EGRRITKLDQILLNGNNITMLIPGGEGPE 90
> mmu:66373 Lsm5, 2010208O10Rik, 2310034K10Rik; LSM5 homolog,
U6 small nuclear RNA associated (S. cerevisiae); K12624 U6 snRNA-associated
Sm-like protein LSm5
Length=91
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 52/80 (65%), Positives = 65/80 (81%), Gaps = 1/80 (1%)
Query 56 SYLPLALVDKCVGSRVWVIMKGDKEIAGTLRGFDDYVNMVLDDVTEFSFTAQGVKKTHLE 115
LPL LVDKC+GSR+ ++MK DKEI GTL GFDD+VNMVL+DVTEF T +G + T L+
Sbjct 11 QLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLD 70
Query 116 TILLNGNNVSILVPGGD-PE 134
ILLNGNN+++LVPGG+ PE
Sbjct 71 QILLNGNNITMLVPGGEGPE 90
> mmu:100044729 u6 snRNA-associated Sm-like protein LSm5-like;
K12624 U6 snRNA-associated Sm-like protein LSm5
Length=91
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 52/80 (65%), Positives = 65/80 (81%), Gaps = 1/80 (1%)
Query 56 SYLPLALVDKCVGSRVWVIMKGDKEIAGTLRGFDDYVNMVLDDVTEFSFTAQGVKKTHLE 115
LPL LVDKC+GSR+ ++MK DKEI GTL GFDD+VNMVL+DVTEF T +G + T L+
Sbjct 11 QLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLD 70
Query 116 TILLNGNNVSILVPGGD-PE 134
ILLNGNN+++LVPGG+ PE
Sbjct 71 QILLNGNNITMLVPGGEGPE 90
> xla:447076 lsm5; LSM5 homolog, U6 small nuclear RNA associated;
K12624 U6 snRNA-associated Sm-like protein LSm5
Length=91
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 52/80 (65%), Positives = 65/80 (81%), Gaps = 1/80 (1%)
Query 56 SYLPLALVDKCVGSRVWVIMKGDKEIAGTLRGFDDYVNMVLDDVTEFSFTAQGVKKTHLE 115
LPL LVDKC+GSR+ ++MK DKEI GTL GFDD+VNMVL+DVTEF T +G + T L+
Sbjct 11 QLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLD 70
Query 116 TILLNGNNVSILVPGGD-PE 134
ILLNGNN+++LVPGG+ PE
Sbjct 71 QILLNGNNITMLVPGGEGPE 90
> pfa:PF14_0411 small nuclear ribonucleoprotein, putative; K12624
U6 snRNA-associated Sm-like protein LSm5
Length=101
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 67/83 (80%), Gaps = 0/83 (0%)
Query 51 VSGGPSYLPLALVDKCVGSRVWVIMKGDKEIAGTLRGFDDYVNMVLDDVTEFSFTAQGVK 110
+SG ++LPLAL+DKC+GS++W++MKGDKEI G L GFD+YVNMVL+DVTE+++ K
Sbjct 4 ISGSETFLPLALMDKCIGSKIWIMMKGDKEIVGKLVGFDEYVNMVLEDVTEYTYANNVKK 63
Query 111 KTHLETILLNGNNVSILVPGGDP 133
++ +LLNG N++I+VPGG P
Sbjct 64 VNKIKKLLLNGLNITIMVPGGTP 86
> hsa:23658 LSM5, FLJ12710, YER146W; LSM5 homolog, U6 small nuclear
RNA associated (S. cerevisiae); K12624 U6 snRNA-associated
Sm-like protein LSm5
Length=62
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 50/61 (81%), Gaps = 1/61 (1%)
Query 75 MKGDKEIAGTLRGFDDYVNMVLDDVTEFSFTAQGVKKTHLETILLNGNNVSILVPGGD-P 133
MK DKEI GTL GFDD+VNMVL+DVTEF T +G + T L+ ILLNGNN+++LVPGG+ P
Sbjct 1 MKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGGEGP 60
Query 134 E 134
E
Sbjct 61 E 61
> sce:YER146W LSM5; Lsm (Like Sm) protein; part of heteroheptameric
complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic
Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex
part of U6 snRNP and possibly involved in processing tRNA,
snoRNA, and rRNA; K12624 U6 snRNA-associated Sm-like protein
LSm5
Length=93
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 56/89 (62%), Gaps = 7/89 (7%)
Query 55 PSYLPLALVDKCVGSRVWVIMKGDKEIAGTLRGFDDYVNMVLDDVTEFSFTAQGVKKT-- 112
P LPL ++DK + +V ++++ ++E GTL GFDD+VN++L+D E+ + +
Sbjct 4 PEILPLEVIDKTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLIDPEDESRNEK 63
Query 113 ---HLETILLNGNNVSILVPGGD--PEEA 136
H +LL+GNN++ILVPGG P EA
Sbjct 64 VMQHHGRMLLSGNNIAILVPGGKKTPTEA 92
> cel:Y62E10A.12 lsm-3; LSM Sm-like protein family member (lsm-3);
K12622 U6 snRNA-associated Sm-like protein LSm3
Length=102
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query 59 PLALVDKCVGSRVWVIMKGDKEIAGTLRGFDDYVNMVLDDVTEFSFTAQGVKKTHLETIL 118
PL L+ + RV+V M+ D+E+ G LR FD ++NMVL +V E + T + V + E I
Sbjct 17 PLDLLRLSLDERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEE-TITTREVDEDTFEEIY 75
Query 119 LNGNNVS-ILVPGGD 132
V +L GD
Sbjct 76 KQTKRVVPMLFVRGD 90
> ath:AT1G21190 small nuclear ribonucleoprotein, putative / snRNP,
putative / Sm protein, putative; K12622 U6 snRNA-associated
Sm-like protein LSm3
Length=97
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 0/74 (0%)
Query 59 PLALVDKCVGSRVWVIMKGDKEIAGTLRGFDDYVNMVLDDVTEFSFTAQGVKKTHLETIL 118
PL L+ + R++V ++ D+E+ G L FD ++NM+L DV E T + +T+ E +
Sbjct 12 PLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEIDDETYEEIVR 71
Query 119 LNGNNVSILVPGGD 132
V L GD
Sbjct 72 TTKRTVPFLFVRGD 85
> ath:AT4G30330 small nuclear ribonucleoprotein E, putative /
snRNP-E, putative / Sm protein E, putative; K11097 small nuclear
ribonucleoprotein E
Length=88
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 10/79 (12%)
Query 59 PLALVDKCVGSR----VWVIMKGDKEIAGTLRGFDDYVNMVLDDVTEFSFTAQGVKKTH- 113
P+ L+ + + S+ +W+ + D I G + GFD+Y+N+VLD+ E S KKT
Sbjct 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIK----KKTRK 68
Query 114 -LETILLNGNNVSILVPGG 131
L ILL G+N+++++ G
Sbjct 69 PLGRILLKGDNITLMMNAG 87
> ath:AT1G76860 small nuclear ribonucleoprotein, putative / snRNP,
putative / Sm protein, putative; K12622 U6 snRNA-associated
Sm-like protein LSm3
Length=98
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 0/74 (0%)
Query 59 PLALVDKCVGSRVWVIMKGDKEIAGTLRGFDDYVNMVLDDVTEFSFTAQGVKKTHLETIL 118
PL L+ + R++V ++ D+E+ G L FD ++NM+L DV E T + +T+ E +
Sbjct 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVEIDDETYEEIVR 71
Query 119 LNGNNVSILVPGGD 132
+ L GD
Sbjct 72 TTKRTIEFLFVRGD 85
> mmu:67678 Lsm3, 1010001J12Rik, 2610005D18Rik, 6030401D18Rik,
SMX4, USS2; LSM3 homolog, U6 small nuclear RNA associated (S.
cerevisiae); K12622 U6 snRNA-associated Sm-like protein LSm3
Length=102
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 0/74 (0%)
Query 59 PLALVDKCVGSRVWVIMKGDKEIAGTLRGFDDYVNMVLDDVTEFSFTAQGVKKTHLETIL 118
PL L+ + R++V M+ D+E+ G L +D ++NM+L DV E T + ++T+ E
Sbjct 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYK 76
Query 119 LNGNNVSILVPGGD 132
N+ +L GD
Sbjct 77 STKRNIPMLFVRGD 90
> hsa:27258 LSM3, SMX4, USS2, YLR438C; LSM3 homolog, U6 small
nuclear RNA associated (S. cerevisiae); K12622 U6 snRNA-associated
Sm-like protein LSm3
Length=102
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 0/74 (0%)
Query 59 PLALVDKCVGSRVWVIMKGDKEIAGTLRGFDDYVNMVLDDVTEFSFTAQGVKKTHLETIL 118
PL L+ + R++V M+ D+E+ G L +D ++NM+L DV E T + ++T+ E
Sbjct 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYK 76
Query 119 LNGNNVSILVPGGD 132
N+ +L GD
Sbjct 77 STKRNIPMLFVRGD 90
> xla:100049097 lsm3; LSM3 homolog, U6 small nuclear RNA associated;
K12622 U6 snRNA-associated Sm-like protein LSm3
Length=102
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 0/74 (0%)
Query 59 PLALVDKCVGSRVWVIMKGDKEIAGTLRGFDDYVNMVLDDVTEFSFTAQGVKKTHLETIL 118
PL L+ + R++V M+ D+E+ G L +D ++NM+L DV E T + ++T+ E
Sbjct 17 PLDLIRLSLDERIYVKMRNDRELRGRLNAYDQHLNMILGDVEETVTTIEIDEETYEEIYK 76
Query 119 LNGNNVSILVPGGD 132
N+ +L GD
Sbjct 77 STKRNIPMLFVRGD 90
> tgo:TGME49_075750 small nuclear ribonucleoprotein E, putative
; K11097 small nuclear ribonucleoprotein E
Length=91
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query 39 SGGSGAPSSAGVVSGGPSYLPLALVDKCVGSRVWVIMKGDKEIAGTLRGFDDYVNMVLDD 98
SGG + + P L + + ++W+ + D I G + GFD+Y+NMVLDD
Sbjct 2 SGGVMSNKKLQKIMTQPINLIFRFFTQRMRVQIWLYEQPDMRIEGRIMGFDEYMNMVLDD 61
Query 99 VTEFSFTAQGVKKTHLET--ILLNGNNVSILV 128
E K+T + ILL G NV++++
Sbjct 62 AEEVYLK----KRTRIPVGRILLKGENVTLIM 89
> bbo:BBOV_IV002640 21.m02844; small nuclear ribonucleoprotein
E; K11097 small nuclear ribonucleoprotein E
Length=89
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 41/62 (66%), Gaps = 4/62 (6%)
Query 68 GSRV--WVIMKGDKEIAGTLRGFDDYVNMVLDDVTEFSFTAQGVKKTHLETILLNGNNVS 125
G+RV W+ + + +I G +RGFD+Y+NMVL+DV E Q ++ L TILL G+ ++
Sbjct 26 GTRVQIWLYDQPNLKIEGKIRGFDEYMNMVLEDVEELYVKKQ--ERRALGTILLKGDAMA 83
Query 126 IL 127
++
Sbjct 84 LI 85
> xla:443996 snrpe; small nuclear ribonucleoprotein polypeptide
E; K11097 small nuclear ribonucleoprotein E
Length=92
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query 59 PLALVDKCVGSR----VWVIMKGDKEIAGTLRGFDDYVNMVLDDVTEFSFTAQGVKKTHL 114
P+ L+ + + +R VW+ + + I G + GFD+Y+N+VLDD E + K+ L
Sbjct 17 PINLIFRYLQNRSRVQVWLYEQVNMRIEGCIIGFDEYMNIVLDDAEEIHLKTKSRKQ--L 74
Query 115 ETILLNGNNVSIL 127
I+L G+N+++L
Sbjct 75 GRIMLKGDNITLL 87
> tpv:TP03_0386 small nuclear ribonucleoprotein; K11097 small
nuclear ribonucleoprotein E
Length=91
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 42/62 (67%), Gaps = 4/62 (6%)
Query 68 GSRV--WVIMKGDKEIAGTLRGFDDYVNMVLDDVTEFSFTAQGVKKTHLETILLNGNNVS 125
G+RV W+ + + +I GT+RGFD+Y+NMVLD+ TE + VKK + ILL G+ ++
Sbjct 26 GTRVQIWLFDQPNTKIEGTIRGFDEYMNMVLDNATEVH-VKKNVKK-DVGRILLKGDCMT 83
Query 126 IL 127
++
Sbjct 84 LI 85
> mmu:20643 Snrpe, AL022645, C76690, SME; small nuclear ribonucleoprotein
E; K11097 small nuclear ribonucleoprotein E
Length=92
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query 59 PLALVDKCVGSR----VWVIMKGDKEIAGTLRGFDDYVNMVLDDVTEFSFTAQGVKKTHL 114
P+ L+ + + +R VW+ + + I G + GFD+Y+N+VLDD E + K+ L
Sbjct 17 PINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQ--L 74
Query 115 ETILLNGNNVSIL 127
I+L G+N+++L
Sbjct 75 GRIMLKGDNITLL 87
> hsa:6635 SNRPE, B-raf, SME, Sm-E; small nuclear ribonucleoprotein
polypeptide E; K11097 small nuclear ribonucleoprotein
E
Length=92
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query 59 PLALVDKCVGSR----VWVIMKGDKEIAGTLRGFDDYVNMVLDDVTEFSFTAQGVKKTHL 114
P+ L+ + + +R VW+ + + I G + GFD+Y+N+VLDD E + K+ L
Sbjct 17 PINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQ--L 74
Query 115 ETILLNGNNVSIL 127
I+L G+N+++L
Sbjct 75 GRIMLKGDNITLL 87
> dre:393979 snrpe, MGC56682, zgc:56682; small nuclear ribonucleoprotein
polypeptide E; K11097 small nuclear ribonucleoprotein
E
Length=92
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query 59 PLALVDKCVGSR----VWVIMKGDKEIAGTLRGFDDYVNMVLDDVTEFSFTAQGVKKTHL 114
P+ L+ + + +R VW+ + + I G + GFD+Y+N+VLDD E + K L
Sbjct 17 PINLIFRYLQNRSRISVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHMKTKNRKP--L 74
Query 115 ETILLNGNNVSIL 127
I+L G+N+++L
Sbjct 75 GRIMLKGDNITLL 87
> pfa:MAL13P1.253 small nuclear ribonucleoprotein, putative; K11097
small nuclear ribonucleoprotein E
Length=93
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query 70 RVWVIMKGDKEIAGTLRGFDDYVNMVLDDVTEFSFTAQGVKKTHLETILLNGNNVSILVP 129
++W+ K D I G + GFD+Y+NMVLD E S K L ILL G+ +++++
Sbjct 30 QIWLYDKPDMRIEGIILGFDEYMNMVLDQTKEISVKKNT--KKELGKILLKGDTITLIME 87
Query 130 GGDPE 134
+ E
Sbjct 88 VKNEE 92
> tgo:TGME49_098970 LSM domain-containing protein ; K12622 U6
snRNA-associated Sm-like protein LSm3
Length=96
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
Query 59 PLALVDKCVGSRVWVIMKGDKEIAGTLRGFDDYVNMVLDDVTEFSFTA--------QGVK 110
PL +V + RV + +GD+E+ G L +D ++NMVL DV E + T + K
Sbjct 10 PLDIVRVSLDERVTIKCRGDREVVGKLHAYDMHLNMVLGDVEEVATTVTSDPLTGDEQTK 69
Query 111 KT--HLETILLNGNNVSILVP 129
KT L I L G+ + ++ P
Sbjct 70 KTTRRLPLIFLRGDAIILVAP 90
> cpv:cgd7_690 small nuclear ribonucleoprotein ; K12622 U6 snRNA-associated
Sm-like protein LSm3
Length=95
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 45/82 (54%), Gaps = 10/82 (12%)
Query 59 PLALVDKCVGSRVWVIMKGDKEIAGTLRGFDDYVNMVLDDVTEFSF----------TAQG 108
PL L+ + +V+V +G++E+ GTL +D ++NMVL +V E + + +
Sbjct 7 PLDLIRLSLDEQVFVKCRGNRELKGTLYAYDPHMNMVLGNVEETYYEEESKSDTQNSEKK 66
Query 109 VKKTHLETILLNGNNVSILVPG 130
+KK +E + L G+ + ++ P
Sbjct 67 LKKRRIEMLFLRGDLIILVKPA 88
> xla:414679 naa38, MGC82379, lsm8; N(alpha)-acetyltransferase
38, NatC auxiliary subunit; K12627 U6 snRNA-associated Sm-like
protein LSm8
Length=96
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 48/79 (60%), Gaps = 4/79 (5%)
Query 63 VDKCVGSRVWVIMKGDKEIAGTLRGFDDYVNMVLDDVTEFSF-TAQGVKKTHLETILLNG 121
++ + V VI + I GTL+GFD +N++LD+ E F ++QGV++ L ++ G
Sbjct 5 LENYINRTVAVITADGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query 122 NNVSILVPGGDPEEAQNAS 140
+NV+++ G+ +E ++S
Sbjct 65 DNVAVI---GEIDEETDSS 80
> mmu:76522 Naa38, 2010003I05Rik, AW214405, Lsm8; N(alpha)-acetyltransferase
38, NatC auxiliary subunit; K12627 U6 snRNA-associated
Sm-like protein LSm8
Length=96
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query 63 VDKCVGSRVWVIMKGDKEIAGTLRGFDDYVNMVLDDVTEFSF-TAQGVKKTHLETILLNG 121
++ + V VI + I GTL+GFD +N++LD+ E F ++QGV++ L ++ G
Sbjct 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query 122 NNVSILVPGGDPEEAQNA 139
+NV+++ G EE +A
Sbjct 65 DNVAVI--GEIDEETDSA 80
> hsa:51691 NAA38, FLJ33242, LSM8; N(alpha)-acetyltransferase
38, NatC auxiliary subunit; K12627 U6 snRNA-associated Sm-like
protein LSm8
Length=96
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query 63 VDKCVGSRVWVIMKGDKEIAGTLRGFDDYVNMVLDDVTEFSF-TAQGVKKTHLETILLNG 121
++ + V VI + I GTL+GFD +N++LD+ E F ++QGV++ L ++ G
Sbjct 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query 122 NNVSILVPGGDPEEAQNA 139
+NV+++ G EE +A
Sbjct 65 DNVAVI--GEIDEETDSA 80
> xla:443926 MGC80249 protein; K11097 small nuclear ribonucleoprotein
E
Length=93
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query 59 PLALVDKCVGSR----VWVIMKGDKEIAGTLRGFDDYVNMVLDDVTEFSFTAQGVKKTHL 114
P+ L+ + + +R VW+ + + I G + GFD+Y+N+VLDD E + K +
Sbjct 18 PINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDSEEIHLKTKSRKP--I 75
Query 115 ETILLNGNNVSIL 127
I+L G+N+++L
Sbjct 76 GRIMLKGDNITLL 88
> cel:ZK593.7 lsm-7; LSM Sm-like protein family member (lsm-7);
K12626 U6 snRNA-associated Sm-like protein LSm7
Length=104
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query 65 KCVGSRVWVIMKGDKEIAGTLRGFDDYVNMVLDDVTEFSFTAQ-----GVKKTHLETILL 119
+ + + V +G +E +G LRGFD +NMVLDD E+ Q G + L I+
Sbjct 18 RFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVVGDETRQLGLIVA 77
Query 120 NGNNVSILVPGGDPEEAQNASAPAE 144
G ++++ P E+ N A E
Sbjct 78 RGTAITVVSPADGLEQIANPFATQE 102
> cpv:cgd1_2910 hypothetical protein ; K11086 small nuclear ribonucleoprotein
B and B'
Length=139
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query 63 VDKCVGSRVWVIMKGDKEIAGTLRGFDDYVNMVLDDVTEFSFTAQGVKKTHLET----IL 118
+ K + R+ V ++ D+ + G L FD ++N+VL D E+ +G + L+ I+
Sbjct 1 MQKYINYRIRVTVQDDRVMVGNLMAFDRHMNLVLSDCQEYRRVKKGEESKELKRSLGLIM 60
Query 119 LNGNNVSILVPGGDPEEAQNASAPAE 144
L G N+ V P+ ++ P E
Sbjct 61 LRGENIVTFVAEAPPKNQ--STKPVE 84
> ath:AT2G03870 small nuclear ribonucleoprotein, putative / snRNP,
putative / Sm protein, putative; K12626 U6 snRNA-associated
Sm-like protein LSm7
Length=99
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query 65 KCVGSRVWVIMKGDKEIAGTLRGFDDYVNMVLDDVTEFSFTAQGVKKTHLET-----ILL 119
K V V V + G +++ GTL+G+D +N+VLD+ EF KT +T I+
Sbjct 13 KFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGLIVC 72
Query 120 NGNNVSILVPGGDPEEAQNASAPAEAA 146
G V ++ P EE N AEA
Sbjct 73 RGTAVMLVSPTDGTEEIANPFVTAEAV 99
> tgo:TGME49_013410 small nuclear ribonucleoprotein F, putative
; K11098 small nuclear ribonucleoprotein F
Length=87
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query 59 PLALVDKCVGSRVWVIMKGDKEIAGTLRGFDDYVNMVLDDVTEFSFTAQGVKKTHLETIL 118
P + G +V V +K E G L+ FD+Y+N+ L + E+ G K HL +L
Sbjct 9 PKPFLTSLTGRQVMVKLKWGIEYKGYLKSFDEYMNLQLQNTEEW---VDGSFKGHLGEVL 65
Query 119 LNGNNVSIL--VPGGDPEEAQ 137
L NNV L V G D E+ +
Sbjct 66 LRCNNVLYLRQVKGEDEEDEE 86
> tpv:TP02_0362 small nuclear ribonucleoprotein B; K11086 small
nuclear ribonucleoprotein B and B'
Length=155
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query 71 VWVIMKGDKEIAGTLRGFDDYVNMVLDDVTEFSFT------AQGVKKTHLETILLNGNNV 124
V V +K +++ GTL +D Y+N+VL D EF T VK+T L +LL G N+
Sbjct 16 VRVTLKDNRKFVGTLVAYDKYMNLVLSDCEEFRMTLGKDKNRTEVKRT-LGFVLLRGENI 74
> ath:AT1G65700 small nuclear ribonucleoprotein, putative / snRNP,
putative / Sm protein, putative; K12627 U6 snRNA-associated
Sm-like protein LSm8
Length=98
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Query 62 LVDKCVGSRVWVIMKGDKEIAGTLRGFDDYVNMVLDDVTEFSF-TAQGVKKTHLETILLN 120
LVD+ + VI + I G L+GFD N++LD+ E F T +GV++ L ++
Sbjct 10 LVDQIIS----VITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLGLYIIR 65
Query 121 GNNVSILVPGGDPEEAQNASAPAEAARS 148
G+N+ ++ G+ +E +AS R+
Sbjct 66 GDNIGVI---GELDEELDASLDFSKLRA 90
> cel:F40F8.9 lsm-1; LSM Sm-like protein family member (lsm-1);
K12620 U6 snRNA-associated Sm-like protein LSm1
Length=125
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query 57 YLP--LALVDKCVGSRVWVIMKGDKEIAGTLRGFDDYVNMVLDDVTEFSFTAQGVKKTHL 114
YLP ++L ++ + ++ V+++ +++ G LR D + N++L+DV E +F + +T
Sbjct 7 YLPGAISLFEQ-LDKKLLVVLRDGRKLIGFLRSIDQFANLILEDVVERTFVEKYFCETGQ 65
Query 115 ETILLNGNNVSI 126
+L+ G NV +
Sbjct 66 GFMLIRGENVEL 77
> cpv:cgd4_1660 small nuclear ribonucleoprotein ; K11097 small
nuclear ribonucleoprotein E
Length=92
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 36/58 (62%), Gaps = 0/58 (0%)
Query 70 RVWVIMKGDKEIAGTLRGFDDYVNMVLDDVTEFSFTAQGVKKTHLETILLNGNNVSIL 127
++W+ + + G ++GFD+Y+N+VLD +E + ++T + +LL G N+S++
Sbjct 31 QIWLYDHKNLVLEGVIQGFDEYMNIVLDQASEVYTKKEVRRETSVGQLLLRGENISLI 88
> bbo:BBOV_III006010 17.m07530; Sm domain containing protein;
K11086 small nuclear ribonucleoprotein B and B'
Length=159
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query 63 VDKCVGSRVWVIMKGDKEIAGTLRGFDDYVNMVLDDVTEFSFT-AQGVKKTHLET----- 116
+ + + RV V +K ++ GT FD ++N+VL D EF T +G K +E
Sbjct 8 MQQWLQYRVRVAIKDGRKFVGTFIAFDKHMNLVLADCEEFRITKGKGPDKQKVELKRTLG 67
Query 117 -ILLNGNNV 124
I+L G N+
Sbjct 68 FIMLRGENI 76
> ath:AT2G18740 small nuclear ribonucleoprotein E, putative /
snRNP-E, putative / Sm protein E, putative
Length=78
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query 59 PLALVDKCVGSR----VWVIMKGDKEIAGTLRGFDDYVNMVLDDVTEFS 103
P+ L+ + + S+ +W+ + D I G + GFD+Y+N+VLD+ E S
Sbjct 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVS 61
> mmu:20638 Snrpb, AL024368, AU018828, SM-B, SM11, SMB, SNRNP-B;
small nuclear ribonucleoprotein B; K11086 small nuclear ribonucleoprotein
B and B'
Length=231
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Query 67 VGSRVWVIMKGDKEIAGTLRGFDDYVNMVLDDVTEF-------SFTAQGVKKTHLETILL 119
+ R+ I++ + GT + FD ++N++L D EF S A+ +K L +LL
Sbjct 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72
Query 120 NGNN-VSILVPGGDPEEAQNASAP 142
G N VS+ V G P++ A P
Sbjct 73 RGENLVSMTVEGPPPKDTGIARVP 96
> hsa:6628 SNRPB, COD, SNRPB1, Sm-B/B', SmB/B', SmB/SmB', snRNP-B;
small nuclear ribonucleoprotein polypeptides B and B1;
K11086 small nuclear ribonucleoprotein B and B'
Length=231
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Query 67 VGSRVWVIMKGDKEIAGTLRGFDDYVNMVLDDVTEF-------SFTAQGVKKTHLETILL 119
+ R+ I++ + GT + FD ++N++L D EF S A+ +K L +LL
Sbjct 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72
Query 120 NGNN-VSILVPGGDPEEAQNASAP 142
G N VS+ V G P++ A P
Sbjct 73 RGENLVSMTVEGPPPKDTGIARVP 96
> cel:Y71F9B.4 snr-7; Small Nuclear Ribonucleoprotein family member
(snr-7); K11099 small nuclear ribonucleoprotein G
Length=77
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query 75 MKGDKEIAGTLRGFDDYVNMVLDDVTEFSFTAQGVKKTHLETILLNGNNVSILVP 129
+ G++ ++G LRGFD ++NMV+D+ E+ V +L ++ GN+V I+ P
Sbjct 21 LNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSV---NLGMTVIRGNSVVIMEP 72
> cel:Y73B6BL.32 lsm-8; LSM Sm-like protein family member (lsm-8);
K12627 U6 snRNA-associated Sm-like protein LSm8
Length=98
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query 74 IMKGD-KEIAGTLRGFDDYVNMVLDDVTEFSFT-AQGVKKTHLETILLNGNNVSILVPGG 131
++ GD + I G L+GFD +N+V++D E S++ +GV T L ++ G NV+I+ G
Sbjct 15 VVTGDGRVIVGLLKGFDQLINLVIEDAHERSYSETEGVLTTPLGLYIIRGENVAII---G 71
Query 132 DPEEAQNASAPAEAARS 148
+ +E + E ++
Sbjct 72 EIDEELDKRVDLENVKA 88
> sce:YLR438C-A LSM3, SMX4, USS2; Lsm (Like Sm) protein; part
of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or
8p): cytoplasmic Lsm1p complex involved in mRNA decay; nuclear
Lsm8p complex part of U6 snRNP and possibly involved in processing
tRNA, snoRNA, and rRNA; K12622 U6 snRNA-associated
Sm-like protein LSm3
Length=89
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query 59 PLALVDKCVGSRVWVIMKGDKEIAGTLRGFDDYVNMVLDDVTEFSFTAQGVK----KTHL 114
PL L+ + RV++ ++G + + GTL+ FD + N+VL D E + + +
Sbjct 4 PLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRC 63
Query 115 ETILLNGNNVSIL-VPGGDPE 134
E + + G+ V+++ P D +
Sbjct 64 EMVFIRGDTVTLISTPSEDDD 84
> bbo:BBOV_IV005760 23.m05936; small nuclear ribonucleoprotein
F; K11098 small nuclear ribonucleoprotein F
Length=94
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 12/84 (14%)
Query 50 VVSGGPSYL--------PLALVDKCVGSRVWVIMKGDKEIAGTLRGFDDYVNMVLDDVTE 101
+V P Y+ P + K VG V+V +K E G L+ FD Y+N+ L++ E
Sbjct 7 IVRKRPLYIQQAVTPLNPKPFLAKLVGQNVFVTLKWGMEYKGFLKSFDSYMNIELENAEE 66
Query 102 FSFTAQGVKKTHL-ETILLNGNNV 124
+ GV K L TIL+ NNV
Sbjct 67 WE---NGVMKGTLGGTILIRCNNV 87
Lambda K H
0.309 0.125 0.343
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 3003468616
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
Posted date: Sep 17, 2011 2:57 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40