bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
164,496 sequences; 82,071,388 total letters
Query= Eten_2267_orf1
Length=139
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_067350 small nuclear ribonucleoprotein, putative ; ... 167 8e-42
cpv:cgd5_2220 small nuclear ribonucleoprotein D1. SM domain co... 144 6e-35
ath:AT4G02840 small nuclear ribonucleoprotein D1, putative / s... 138 5e-33
ath:AT3G07590 small nuclear ribonucleoprotein D1, putative / s... 136 2e-32
bbo:BBOV_IV008240 23.m06020; small nuclear ribonucleoprotein S... 136 3e-32
tpv:TP01_0949 small nuclear ribonucleoprotein D1; K11087 small... 132 3e-31
xla:443747 snrpd1, MGC130717, MGC160444, MGC78968; small nucle... 131 8e-31
mmu:20641 Snrpd1, AA407109, AL023031, SMD1; small nuclear ribo... 130 2e-30
hsa:6632 SNRPD1, HsT2456, SMD1, SNRPD, Sm-D1; small nuclear ri... 130 2e-30
mmu:100043882 Gm14277, OTTMUSG00000016169; predicted gene 14277 129 3e-30
dre:192331 snrpd1, CHUNP6882, fk26a01, snprd1, snrnpd1, wu:fk2... 129 3e-30
cel:T28D9.10 snr-3; Small Nuclear Ribonucleoprotein family mem... 122 4e-28
pfa:PF11_0266 small nuclear ribonucleoprotein D1, putative; K1... 120 1e-27
hsa:100129492 small nuclear ribonucleoprotein Sm D1-like 118 7e-27
sce:YGR074W SMD1, SPP92; Sm D1; K11087 small nuclear ribonucle... 74.7 7e-14
cpv:cgd1_2250 small nucealr riboprotein SMD3, SM domain ; K110... 53.5 2e-07
ath:AT1G76300 SmD3; SmD3 (snRNP core protein SmD3); K11088 sma... 52.0 5e-07
ath:AT1G20580 small nuclear ribonucleoprotein, putative / snRN... 51.6 7e-07
cel:Y116A8C.42 snr-1; Small Nuclear Ribonucleoprotein family m... 51.6 7e-07
hsa:84967 LSM10, MGC15749, MST074, MSTP074; LSM10, U7 small nu... 50.8 1e-06
mmu:116748 Lsm10; U7 snRNP-specific Sm-like protein LSM10 50.8 1e-06
xla:495318 lsm4; LSM4 homolog, U6 small nuclear RNA associated... 47.4 1e-05
dre:393669 lsm4, MGC73057, zgc:73057, zgc:77848; LSM4 homolog,... 47.0 2e-05
tpv:TP04_0358 small nuclear ribonucleoprotein; K11088 small nu... 46.6 2e-05
bbo:BBOV_II002410 18.m06196; small nuclear ribonucleoprotein (... 46.6 3e-05
ath:AT5G27720 emb1644 (embryo defective 1644); K12623 U6 snRNA... 46.2 3e-05
mmu:50783 Lsm4; LSM4 homolog, U6 small nuclear RNA associated ... 45.4 5e-05
sce:YBL026W LSM2, SMX5, SNP3; Lsm (Like Sm) protein; part of h... 45.1 6e-05
xla:379046 hypothetical protein MGC52856 45.1 6e-05
tgo:TGME49_109740 small nuclear ribonucleoprotein, putative ; ... 45.1 7e-05
xla:431993 snrpd3, MGC81359; small nuclear ribonucleoprotein D... 45.1 7e-05
mmu:67332 Snrpd3, 1700043E15Rik, 2310009E13Rik, AW046420, SMD3... 45.1 7e-05
hsa:6634 SNRPD3, SMD3, Sm-D3; small nuclear ribonucleoprotein ... 45.1 7e-05
hsa:25804 LSM4, YER112W; LSM4 homolog, U6 small nuclear RNA as... 44.7 9e-05
dre:57924 smx5, lsm2, wu:fe48h10, zgc:101795; smx5; K12621 U6 ... 44.3 1e-04
mmu:27756 Lsm2, D17H6S56E-2, D17H6S56E2, Dmapl, Dmpkap, G7b, M... 44.3 1e-04
hsa:57819 LSM2, C6orf28, G7b, YBL026W, snRNP; LSM2 homolog, U6... 44.3 1e-04
xla:100134834 lsm2, MGC84990; LSM2 homolog, U6 small nuclear R... 44.3 1e-04
sce:YLR147C SMD3, SLT16; Sm D3; K11088 small nuclear ribonucle... 43.9 2e-04
cel:T10G3.6 gut-2; GUT differentiation defective family member... 42.7 3e-04
dre:327011 snrpd3l, SNRPD3, wu:fa18f04, zgc:56125; small nucle... 42.7 3e-04
pfa:PF11_0524 lsm4 homologue, putative; K12623 U6 snRNA-associ... 42.7 4e-04
ath:AT1G03330 small nuclear ribonucleoprotein D, putative / sn... 42.4 4e-04
dre:415171 snrpd3, zgc:86943; small nuclear ribonucleoprotein ... 41.6 9e-04
cel:F32A5.7 lsm-4; LSM Sm-like protein family member (lsm-4); ... 41.2 0.001
pfa:PFI0475w small nuclear ribonucleoprotein (snRNP), putative... 41.2 0.001
tpv:TP03_0516 U6 snRNA-associated protein; K12623 U6 snRNA-ass... 39.7 0.003
sce:YER112W LSM4, SDB23, USS1; Lsm (Like Sm) protein; part of ... 39.7 0.003
pfa:PFE1020w U6 snRNA-associated sm-like protein Lsm2, putativ... 38.1 0.009
tgo:TGME49_078950 U6 snRNA associated Sm-like protein LSm4, pu... 36.6 0.024
> tgo:TGME49_067350 small nuclear ribonucleoprotein, putative
; K11087 small nuclear ribonucleoprotein D1
Length=121
Score = 167 bits (424), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 80/98 (81%), Positives = 92/98 (93%), Gaps = 1/98 (1%)
Query 15 MKLVRFLMRLANETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKHSNPVSMDHLTI 74
MKLVRFLMRLANETLV+ELKNGTV+HGT+VGVD++MNTHLKNVK+T+K NP S++HLTI
Sbjct 1 MKLVRFLMRLANETLVIELKNGTVIHGTVVGVDISMNTHLKNVKMTMKQGNPTSLEHLTI 60
Query 75 RGSNIRYFILPDSLPLDTLLIDDTPIQRPPRETGLRPL 112
RG+NIRYFILPDSLPLDTLLIDDTP+QRP RE G RP+
Sbjct 61 RGNNIRYFILPDSLPLDTLLIDDTPLQRPAREAG-RPI 97
> cpv:cgd5_2220 small nuclear ribonucleoprotein D1. SM domain
containing protein ; K11087 small nuclear ribonucleoprotein
D1
Length=137
Score = 144 bits (364), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 65/92 (70%), Positives = 81/92 (88%), Gaps = 0/92 (0%)
Query 14 KMKLVRFLMRLANETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKHSNPVSMDHLT 73
KMKL+RFLM+L N ++V+ELKNGT++ GTIV VD++MNT+LKNVK++VKH NPVS+ +T
Sbjct 11 KMKLIRFLMKLVNNSVVIELKNGTIIQGTIVTVDMSMNTYLKNVKMSVKHRNPVSLSQIT 70
Query 74 IRGSNIRYFILPDSLPLDTLLIDDTPIQRPPR 105
+RG+ IRYFILPDSLPLD LLIDDTP Q PPR
Sbjct 71 VRGNTIRYFILPDSLPLDALLIDDTPKQNPPR 102
> ath:AT4G02840 small nuclear ribonucleoprotein D1, putative /
snRNP core protein D1, putative / Sm protein D1, putative
Length=116
Score = 138 bits (348), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 65/94 (69%), Positives = 82/94 (87%), Gaps = 0/94 (0%)
Query 15 MKLVRFLMRLANETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKHSNPVSMDHLTI 74
MKLVRFLM+L NET+ +ELKNGT+VHGTI GVDV+MNTHLK VKLT+K NPV++DHL++
Sbjct 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSV 60
Query 75 RGSNIRYFILPDSLPLDTLLIDDTPIQRPPRETG 108
RG+NIRY+ILPDSL L+TLL++DTP +P + T
Sbjct 61 RGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTA 94
> ath:AT3G07590 small nuclear ribonucleoprotein D1, putative /
snRNP core protein D1, putative / Sm protein D1, putative;
K11087 small nuclear ribonucleoprotein D1
Length=114
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 63/91 (69%), Positives = 81/91 (89%), Gaps = 0/91 (0%)
Query 15 MKLVRFLMRLANETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKHSNPVSMDHLTI 74
MKLVRFLM+L NET+ +ELKNGTVVHGTI GVDV+MNTHLK VK+++K NPV++DHL++
Sbjct 1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSL 60
Query 75 RGSNIRYFILPDSLPLDTLLIDDTPIQRPPR 105
RG+NIRY+ILPDSL L+TLL++DTP +P +
Sbjct 61 RGNNIRYYILPDSLNLETLLVEDTPRVKPKK 91
> bbo:BBOV_IV008240 23.m06020; small nuclear ribonucleoprotein
Sm subunit; K11087 small nuclear ribonucleoprotein D1
Length=125
Score = 136 bits (342), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 66/97 (68%), Positives = 81/97 (83%), Gaps = 6/97 (6%)
Query 15 MKLVRFLMRLANETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKHS------NPVS 68
MKLVRFLM+LANE++ +ELKNGTV+ GT++GVD++MNTHLKNVK+ K S N +
Sbjct 1 MKLVRFLMKLANESVTVELKNGTVLTGTVIGVDISMNTHLKNVKIVNKDSGSGSEPNYIL 60
Query 69 MDHLTIRGSNIRYFILPDSLPLDTLLIDDTPIQRPPR 105
+DHLT+RG+NIRYFIL DSLPLDTLLIDDTP Q+P R
Sbjct 61 LDHLTVRGNNIRYFILSDSLPLDTLLIDDTPKQKPSR 97
> tpv:TP01_0949 small nuclear ribonucleoprotein D1; K11087 small
nuclear ribonucleoprotein D1
Length=125
Score = 132 bits (332), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 80/97 (82%), Gaps = 6/97 (6%)
Query 15 MKLVRFLMRLANETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKH------SNPVS 68
MKLVRFLM+LANE L LELKNGTV+ G ++G+D++MNTHLK+VK+ K +N V
Sbjct 1 MKLVRFLMKLANEELTLELKNGTVITGVVIGIDISMNTHLKSVKVVTKGPDGKEGTNVVL 60
Query 69 MDHLTIRGSNIRYFILPDSLPLDTLLIDDTPIQRPPR 105
+DHLT+RG+NIRYF+L +S+PLDTLLIDDTP+Q+P +
Sbjct 61 LDHLTVRGNNIRYFLLSESIPLDTLLIDDTPVQKPSK 97
> xla:443747 snrpd1, MGC130717, MGC160444, MGC78968; small nuclear
ribonucleoprotein D1 polypeptide 16kDa; K11087 small nuclear
ribonucleoprotein D1
Length=119
Score = 131 bits (329), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 64/93 (68%), Positives = 79/93 (84%), Gaps = 1/93 (1%)
Query 15 MKLVRFLMRLANETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKHSNPVSMDHLTI 74
MKLVRFLM+L++ET+ +ELKNGT VHGTI GVDV+MNTHLK VK+TVK+ PV ++ L+I
Sbjct 1 MKLVRFLMKLSHETVTVELKNGTQVHGTITGVDVSMNTHLKAVKMTVKNREPVQLETLSI 60
Query 75 RGSNIRYFILPDSLPLDTLLIDDTP-IQRPPRE 106
RG+NIRYFILPDSLPLDTLL+D P ++ RE
Sbjct 61 RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKRE 93
> mmu:20641 Snrpd1, AA407109, AL023031, SMD1; small nuclear ribonucleoprotein
D1; K11087 small nuclear ribonucleoprotein D1
Length=119
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/93 (67%), Positives = 79/93 (84%), Gaps = 1/93 (1%)
Query 15 MKLVRFLMRLANETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKHSNPVSMDHLTI 74
MKLVRFLM+L++ET+ +ELKNGT VHGTI GVDV+MNTHLK VK+T+K+ PV ++ L+I
Sbjct 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60
Query 75 RGSNIRYFILPDSLPLDTLLIDDTP-IQRPPRE 106
RG+NIRYFILPDSLPLDTLL+D P ++ RE
Sbjct 61 RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKRE 93
> hsa:6632 SNRPD1, HsT2456, SMD1, SNRPD, Sm-D1; small nuclear
ribonucleoprotein D1 polypeptide 16kDa; K11087 small nuclear
ribonucleoprotein D1
Length=119
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/93 (67%), Positives = 79/93 (84%), Gaps = 1/93 (1%)
Query 15 MKLVRFLMRLANETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKHSNPVSMDHLTI 74
MKLVRFLM+L++ET+ +ELKNGT VHGTI GVDV+MNTHLK VK+T+K+ PV ++ L+I
Sbjct 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60
Query 75 RGSNIRYFILPDSLPLDTLLIDDTP-IQRPPRE 106
RG+NIRYFILPDSLPLDTLL+D P ++ RE
Sbjct 61 RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKRE 93
> mmu:100043882 Gm14277, OTTMUSG00000016169; predicted gene 14277
Length=119
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 60/85 (70%), Positives = 75/85 (88%), Gaps = 0/85 (0%)
Query 15 MKLVRFLMRLANETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKHSNPVSMDHLTI 74
MKLVRFLM+L++ET+ +ELKNGT VHGTI GVDV+MNTHLK VK+T+K+ PV ++ L+I
Sbjct 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60
Query 75 RGSNIRYFILPDSLPLDTLLIDDTP 99
+G+NIRYFILPDSLPLDTLL+D P
Sbjct 61 QGTNIRYFILPDSLPLDTLLVDVEP 85
> dre:192331 snrpd1, CHUNP6882, fk26a01, snprd1, snrnpd1, wu:fk26a01,
zgc:86929; small nuclear ribonucleoprotein D1 polypeptide;
K11087 small nuclear ribonucleoprotein D1
Length=119
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/93 (66%), Positives = 78/93 (83%), Gaps = 1/93 (1%)
Query 15 MKLVRFLMRLANETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKHSNPVSMDHLTI 74
MKLVRFLM+L++ET+ +ELKNGT VHGTI GVDV+MNTHLK VK+T+K+ P ++ L+I
Sbjct 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPTQLESLSI 60
Query 75 RGSNIRYFILPDSLPLDTLLIDDTP-IQRPPRE 106
RG+NIRYFILPDSLPLDTLL+D P ++ RE
Sbjct 61 RGNNIRYFILPDSLPLDTLLVDIEPKVKSKKRE 93
> cel:T28D9.10 snr-3; Small Nuclear Ribonucleoprotein family member
(snr-3); K11087 small nuclear ribonucleoprotein D1
Length=126
Score = 122 bits (305), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/85 (70%), Positives = 72/85 (84%), Gaps = 0/85 (0%)
Query 15 MKLVRFLMRLANETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKHSNPVSMDHLTI 74
MKLVRFLM+L++ET+ +ELKNGT V GTI+GVDVAMNTHL+ V +TVK+ PV +D L+I
Sbjct 1 MKLVRFLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPVKLDTLSI 60
Query 75 RGSNIRYFILPDSLPLDTLLIDDTP 99
RG+NIRY ILPD L LDTLLIDD P
Sbjct 61 RGNNIRYIILPDPLALDTLLIDDEP 85
> pfa:PF11_0266 small nuclear ribonucleoprotein D1, putative;
K11087 small nuclear ribonucleoprotein D1
Length=126
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/128 (46%), Positives = 85/128 (66%), Gaps = 12/128 (9%)
Query 15 MKLVRFLMRLANETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKHSNP-------- 66
MKLV FLM+L NE + +ELKNGT++ G I VD+ MNTH+KNVK+ +K+ N
Sbjct 1 MKLVHFLMKLTNENVTIELKNGTLITGIITAVDIKMNTHMKNVKVVIKNKNIAEYNVNTK 60
Query 67 --VSMDHLTIRGSNIRYFILPDSLPLDTLLIDDTPIQRPPRETGLRPLARGRGRGGRGAP 124
+S++H+TIRG+NIRYFIL DSLPLD+LL++DT ++ ++ +G +G +G
Sbjct 61 QFLSLEHVTIRGNNIRYFILSDSLPLDSLLVEDTTPKKISKDKSFLHRDKGMSKGAKG-- 118
Query 125 RGARGGPR 132
RG + R
Sbjct 119 RGRKLSKR 126
> hsa:100129492 small nuclear ribonucleoprotein Sm D1-like
Length=119
Score = 118 bits (295), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 59/93 (63%), Positives = 75/93 (80%), Gaps = 1/93 (1%)
Query 15 MKLVRFLMRLANETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKHSNPVSMDHLTI 74
MKLVRFLM+L++ET+ + LKN T VHGT+ GVDV+MNTHLK VK+T K+ PV ++ L+I
Sbjct 1 MKLVRFLMKLSHETVTIALKNRTQVHGTVTGVDVSMNTHLKAVKMTPKNREPVQLETLSI 60
Query 75 RGSNIRYFILPDSLPLDTLLIDDTP-IQRPPRE 106
RG+NIRYFIL DSLPLDTLL+D P ++ RE
Sbjct 61 RGNNIRYFILLDSLPLDTLLVDVEPKVKSKKRE 93
> sce:YGR074W SMD1, SPP92; Sm D1; K11087 small nuclear ribonucleoprotein
D1
Length=146
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 68/147 (46%), Gaps = 29/147 (19%)
Query 15 MKLVRFLMRLANETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKH----------- 63
MKLV FL +L NE + +ELKNGT V GT+ V MN L +VKLT+
Sbjct 1 MKLVNFLKKLRNEQVTIELKNGTTVWGTLQSVSPQMNAILTDVKLTLPQPRLNKLNSNGI 60
Query 64 ----------------SNPVSMDHLTIRGSNIRYFILPDSLPLDTLLIDDTPIQRPPRET 107
N S+ ++ IRG+ IR ILPDSL LD+LL+D + R
Sbjct 61 AMASLYLTGGQQPTASDNIASLQYINIRGNTIRQIILPDSLNLDSLLVDQKQLNSLRRSG 120
Query 108 GLRPLARGRGRGGRGAPRGARGGPRGG 134
+ + R GAP R PR G
Sbjct 121 QIANDPSKKRRRDFGAPANKR--PRRG 145
> cpv:cgd1_2250 small nucealr riboprotein SMD3, SM domain ; K11088
small nuclear ribonucleoprotein D3
Length=143
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 0/60 (0%)
Query 29 LVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKHSNPVSMDHLTIRGSNIRYFILPDSL 88
+ +ELK+G + GT+ V+ MN L++V T++ PVS++ +RGS IR+ ILPD L
Sbjct 40 VTIELKSGDLYRGTLTHVEDNMNCMLEHVNATMRDGKPVSLEQCYLRGSQIRFCILPDML 99
> ath:AT1G76300 SmD3; SmD3 (snRNP core protein SmD3); K11088 small
nuclear ribonucleoprotein D3
Length=128
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 8/104 (7%)
Query 18 VRFLMRLANETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKHSNPVSMDHLTIRGS 77
V+ L + + +E+K+G + G+++ + N L+N+ T K ++H+ IRGS
Sbjct 9 VKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
Query 78 NIRYFILPDSLPLDTLLIDDTPIQRPPRETGLR-PLARGRGRGG 120
+R+ ++PD ++ + P+ + R G L GRGRG
Sbjct 69 LVRFLVIPD-------MLKNAPMFKDVRGKGKSASLGVGRGRGA 105
> ath:AT1G20580 small nuclear ribonucleoprotein, putative / snRNP,
putative / Sm protein, putative
Length=131
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 11/111 (9%)
Query 18 VRFLMRLANETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKHSNPVSMDHLTIRGS 77
V+ L + + +ELK+G + G+++ + N L+++ T K ++H+ IRGS
Sbjct 9 VKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQLEHVFIRGS 68
Query 78 NIRYFILPDSL---PLDTLLIDDTPIQRPPRETGLRPLARGRGRGG-RGAP 124
+R+ ++PD L P+ L D I+ G+ GRGRG RG P
Sbjct 69 KVRFMVIPDILKHAPMFKRL--DARIKGKSSSLGV-----GRGRGAMRGKP 112
> cel:Y116A8C.42 snr-1; Small Nuclear Ribonucleoprotein family
member (snr-1); K11088 small nuclear ribonucleoprotein D3
Length=136
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 52/117 (44%), Gaps = 8/117 (6%)
Query 18 VRFLMRLANETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKHSNPVSMDHLTIRGS 77
++ L + LE G V G + + MN L +T + +D++ IRG+
Sbjct 8 IKILHEAEGHMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGN 67
Query 78 NIRYFILPDSLPLDTLLIDDTPIQRPPRETGLRPL-ARGRGRG-------GRGAPRG 126
IR+ ILPD L + + Q+ GL L RGRGRG GRG PRG
Sbjct 68 KIRFMILPDMLKNAPMFKNIGRAQKGAIGMGLGGLDQRGRGRGTAFRRPMGRGGPRG 124
> hsa:84967 LSM10, MGC15749, MST074, MSTP074; LSM10, U7 small
nuclear RNA associated
Length=123
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 11/114 (9%)
Query 12 FAKMKLVRFLMRLANETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKHSNPVSMDH 71
++ L+ L L ++L++ +V HG I VD MN L V T + + V +D
Sbjct 12 ISENSLIILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQVKLDD 71
Query 72 LTIRGSNIRYFILPDSLPLDTLLIDDTPIQRPPRETGLRPLARGRGRGGRGAPR 125
L + G N+RY +PD + + + + E L+ + R R GG+G R
Sbjct 72 LFVTGRNVRYVHIPDDVNITSTI-----------EQQLQIIHRVRNFGGKGQGR 114
> mmu:116748 Lsm10; U7 snRNP-specific Sm-like protein LSM10
Length=122
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 11/114 (9%)
Query 12 FAKMKLVRFLMRLANETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKHSNPVSMDH 71
++ L+ L L + ++L++ +V G I VD MN L NV T + + V +D
Sbjct 12 ISENSLIILLQGLQGQITTVDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHQVELDD 71
Query 72 LTIRGSNIRYFILPDSLPLDTLLIDDTPIQRPPRETGLRPLARGRGRGGRGAPR 125
L + G N+RY +PD + + + E L+ + R R GG+G R
Sbjct 72 LFVTGRNVRYVHIPDGVDITATI-----------EQQLQIIHRVRNFGGKGQGR 114
> xla:495318 lsm4; LSM4 homolog, U6 small nuclear RNA associated;
K12623 U6 snRNA-associated Sm-like protein LSm4
Length=138
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 16/102 (15%)
Query 20 FLMRLANETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKHSNPVS-MDHLTIRGSN 78
L N +++ELKNG +G +V D MN +L+ V T + + M IRGS
Sbjct 6 LLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGST 65
Query 79 IRYFILPDSLPLDTLLIDDTPIQRPPRETGLRPLARGRGRGG 120
I+Y +PD + I E +++GRGRGG
Sbjct 66 IKYLRIPDEI-----------IDMVKEEV----MSKGRGRGG 92
> dre:393669 lsm4, MGC73057, zgc:73057, zgc:77848; LSM4 homolog,
U6 small nuclear RNA associated (S. cerevisiae); K12623 U6
snRNA-associated Sm-like protein LSm4
Length=143
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 16/102 (15%)
Query 20 FLMRLANETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKHSNPVS-MDHLTIRGSN 78
L N +++ELKNG +G +V D MN +L+ V T + + M IRGS
Sbjct 6 LLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGST 65
Query 79 IRYFILPDSLPLDTLLIDDTPIQRPPRETGLRPLARGRGRGG 120
I+Y +PD + I E +++GRGRGG
Sbjct 66 IKYLRIPDEI-----------IDMVKEEV----VSKGRGRGG 92
> tpv:TP04_0358 small nuclear ribonucleoprotein; K11088 small
nuclear ribonucleoprotein D3
Length=118
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 0/71 (0%)
Query 18 VRFLMRLANETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKHSNPVSMDHLTIRGS 77
++ L + +EL+N + GT+ V+ MN L+ V +T+K ++++ + +RG+
Sbjct 7 IKLLYEGIGHVVTVELQNSNLYRGTLTNVEDNMNCLLEGVVMTMKDGRTIALEQVYLRGA 66
Query 78 NIRYFILPDSL 88
I++ I PD L
Sbjct 67 QIQFMIFPDML 77
> bbo:BBOV_II002410 18.m06196; small nuclear ribonucleoprotein
(snRNP); K11088 small nuclear ribonucleoprotein D3
Length=110
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 0/60 (0%)
Query 29 LVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKHSNPVSMDHLTIRGSNIRYFILPDSL 88
+ +E++N + GT+V V+ MN L+ V + +K ++++ + +RG+ IR+ I PD L
Sbjct 18 VTVEMQNSQLYRGTLVNVEDNMNCLLEGVTMVMKDGKTLALEQVFLRGAQIRFVIFPDML 77
> ath:AT5G27720 emb1644 (embryo defective 1644); K12623 U6 snRNA-associated
Sm-like protein LSm4
Length=129
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query 29 LVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKHSNPVS-MDHLTIRGSNIRYFILPDS 87
+++ELKNG +G +V D MN HL+ V T K + M IRG+ I+Y +PD
Sbjct 15 MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74
Query 88 LPLDTLLIDDTPIQRPP 104
+ +D + + T R P
Sbjct 75 V-IDKVQEEKTRTDRKP 90
> mmu:50783 Lsm4; LSM4 homolog, U6 small nuclear RNA associated
(S. cerevisiae); K12623 U6 snRNA-associated Sm-like protein
LSm4
Length=138
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query 18 VRFLMRLANETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKHSNPVS-MDHLTIRG 76
+ L N +++ELKNG +G +V D MN +L+ V T + + M IRG
Sbjct 4 LSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 63
Query 77 SNIRYFILPDSL 88
S I+Y +PD +
Sbjct 64 STIKYLRIPDEI 75
> sce:YBL026W LSM2, SMX5, SNP3; Lsm (Like Sm) protein; part of
heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p):
cytoplasmic Lsm1p complex involved in mRNA decay; nuclear
Lsm8p complex part of U6 snRNP and possibly involved in processing
tRNA, snoRNA, and rRNA; K12621 U6 snRNA-associated Sm-like
protein LSm2
Length=95
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query 15 MKLVRFLMRLANETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKHSNPV--SMDHL 72
M F L ++ +V+ELKN + GT+ VD +N L N+ T + P S+ ++
Sbjct 1 MLFFSFFKTLVDQEVVVELKNDIEIKGTLQSVDQFLNLKLDNISCTDEKKYPHLGSVRNI 60
Query 73 TIRGSNIRYFILPDSLPLDTLLIDD 97
IRGS +RY L ++ +DT L+ D
Sbjct 61 FIRGSTVRYVYLNKNM-VDTNLLQD 84
> xla:379046 hypothetical protein MGC52856
Length=126
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 0/71 (0%)
Query 18 VRFLMRLANETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKHSNPVSMDHLTIRGS 77
++ L + E G V G ++ + MN + N+ +T + ++ + IRGS
Sbjct 7 IKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGS 66
Query 78 NIRYFILPDSL 88
IR+ ILPD L
Sbjct 67 KIRFLILPDML 77
> tgo:TGME49_109740 small nuclear ribonucleoprotein, putative
; K11088 small nuclear ribonucleoprotein D3
Length=131
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 0/71 (0%)
Query 18 VRFLMRLANETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKHSNPVSMDHLTIRGS 77
V+ L T+ +E+K+G V G + + MN L+ V +T + VS++ + IRGS
Sbjct 8 VKLLYEGLGHTVTVEIKSGEVYRGVLENAEDNMNCLLQTVTVTHRDGRVVSLEQVYIRGS 67
Query 78 NIRYFILPDSL 88
+++ + PD L
Sbjct 68 QVKFIVFPDML 78
> xla:431993 snrpd3, MGC81359; small nuclear ribonucleoprotein
D3 polypeptide 18kDa; K11088 small nuclear ribonucleoprotein
D3
Length=126
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 0/71 (0%)
Query 18 VRFLMRLANETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKHSNPVSMDHLTIRGS 77
++ L + E G V G ++ + MN + N+ +T + ++ + IRGS
Sbjct 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGS 66
Query 78 NIRYFILPDSL 88
IR+ ILPD L
Sbjct 67 KIRFLILPDML 77
> mmu:67332 Snrpd3, 1700043E15Rik, 2310009E13Rik, AW046420, SMD3;
small nuclear ribonucleoprotein D3; K11088 small nuclear
ribonucleoprotein D3
Length=126
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 0/71 (0%)
Query 18 VRFLMRLANETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKHSNPVSMDHLTIRGS 77
++ L + E G V G ++ + MN + N+ +T + ++ + IRGS
Sbjct 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGS 66
Query 78 NIRYFILPDSL 88
IR+ ILPD L
Sbjct 67 KIRFLILPDML 77
> hsa:6634 SNRPD3, SMD3, Sm-D3; small nuclear ribonucleoprotein
D3 polypeptide 18kDa; K11088 small nuclear ribonucleoprotein
D3
Length=126
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 0/71 (0%)
Query 18 VRFLMRLANETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKHSNPVSMDHLTIRGS 77
++ L + E G V G ++ + MN + N+ +T + ++ + IRGS
Sbjct 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGS 66
Query 78 NIRYFILPDSL 88
IR+ ILPD L
Sbjct 67 KIRFLILPDML 77
> hsa:25804 LSM4, YER112W; LSM4 homolog, U6 small nuclear RNA
associated (S. cerevisiae); K12623 U6 snRNA-associated Sm-like
protein LSm4
Length=139
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query 20 FLMRLANETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKHSNPVS-MDHLTIRGSN 78
L N +++ELKNG +G +V D MN +L+ V T + + M IRGS
Sbjct 6 LLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGST 65
Query 79 IRYFILPDSL 88
I+Y +PD +
Sbjct 66 IKYLRIPDEI 75
> dre:57924 smx5, lsm2, wu:fe48h10, zgc:101795; smx5; K12621 U6
snRNA-associated Sm-like protein LSm2
Length=95
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query 15 MKLVRFLMRLANETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLT--VKHSNPVSMDHL 72
M F L + +V+ELKN + GT+ VD +N L ++ +T K+ + +S+ +
Sbjct 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query 73 TIRGSNIRYFILPDSLPLDTLLIDD 97
IRGS +RY LP +DT L+ D
Sbjct 61 FIRGSVVRYVQLPAD-EVDTQLLQD 84
> mmu:27756 Lsm2, D17H6S56E-2, D17H6S56E2, Dmapl, Dmpkap, G7b,
MGC13889, Sm-X5, SmX5, snRNP; LSM2 homolog, U6 small nuclear
RNA associated (S. cerevisiae); K12621 U6 snRNA-associated
Sm-like protein LSm2
Length=95
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query 15 MKLVRFLMRLANETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLT--VKHSNPVSMDHL 72
M F L + +V+ELKN + GT+ VD +N L ++ +T K+ + +S+ +
Sbjct 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query 73 TIRGSNIRYFILPDSLPLDTLLIDD 97
IRGS +RY LP +DT L+ D
Sbjct 61 FIRGSVVRYVQLPAD-EVDTQLLQD 84
> hsa:57819 LSM2, C6orf28, G7b, YBL026W, snRNP; LSM2 homolog,
U6 small nuclear RNA associated (S. cerevisiae); K12621 U6 snRNA-associated
Sm-like protein LSm2
Length=95
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query 15 MKLVRFLMRLANETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLT--VKHSNPVSMDHL 72
M F L + +V+ELKN + GT+ VD +N L ++ +T K+ + +S+ +
Sbjct 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query 73 TIRGSNIRYFILPDSLPLDTLLIDD 97
IRGS +RY LP +DT L+ D
Sbjct 61 FIRGSVVRYVQLPAD-EVDTQLLQD 84
> xla:100134834 lsm2, MGC84990; LSM2 homolog, U6 small nuclear
RNA associated; K12621 U6 snRNA-associated Sm-like protein
LSm2
Length=95
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query 15 MKLVRFLMRLANETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLT--VKHSNPVSMDHL 72
M F L + +V+ELKN + GT+ VD +N L ++ +T K+ + +S+ +
Sbjct 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query 73 TIRGSNIRYFILPDSLPLDTLLIDD 97
IRGS +RY LP +DT L+ D
Sbjct 61 FIRGSVVRYVQLPAD-EVDTQLLQD 84
> sce:YLR147C SMD3, SLT16; Sm D3; K11088 small nuclear ribonucleoprotein
D3
Length=101
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 0/71 (0%)
Query 18 VRFLMRLANETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKHSNPVSMDHLTIRGS 77
V+ L + LEL G G +V + +MN L++V T MD + +RGS
Sbjct 8 VKLLNEAQGHIVSLELTTGATYRGKLVESEDSMNVQLRDVIATEPQGAVTHMDQIFVRGS 67
Query 78 NIRYFILPDSL 88
I++ ++PD L
Sbjct 68 QIKFIVVPDLL 78
> cel:T10G3.6 gut-2; GUT differentiation defective family member
(gut-2); K12621 U6 snRNA-associated Sm-like protein LSm2
Length=97
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query 15 MKLVRFLMRLANETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKHSNP--VSMDHL 72
M F L + +V+ELKN + GT+ VD +N L ++ ++ P VS+ +
Sbjct 1 MLFFSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNMKLTDITVSDPERFPHMVSVKNC 60
Query 73 TIRGSNIRYFILPDSLPLDTLLIDDT 98
IRGS +RY LP S +DT L+ D+
Sbjct 61 FIRGSVVRYVQLP-SDQVDTQLLADS 85
> dre:327011 snrpd3l, SNRPD3, wu:fa18f04, zgc:56125; small nuclear
ribonucleoprotein D3 polypeptide, like; K11088 small nuclear
ribonucleoprotein D3
Length=128
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 0/71 (0%)
Query 18 VRFLMRLANETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKHSNPVSMDHLTIRGS 77
++ L + E G V G ++ + MN + N+ +T + ++ + IRGS
Sbjct 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVSQLEQVYIRGS 66
Query 78 NIRYFILPDSL 88
IR+ ILPD L
Sbjct 67 KIRFLILPDML 77
> pfa:PF11_0524 lsm4 homologue, putative; K12623 U6 snRNA-associated
Sm-like protein LSm4
Length=126
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 12/84 (14%)
Query 26 NETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKHSNPV-SMDHLTIRGSNIRYFIL 84
N+ +++ELKNG G +V D MN H+KN+ T K + + +RG++I+Y
Sbjct 13 NQPVMVELKNGETYSGFLVFCDRFMNLHMKNIICTSKDGDKFWKISECYVRGNSIKY--- 69
Query 85 PDSLPLDTLLIDDTPIQRPPRETG 108
+ + D I++ ET
Sbjct 70 --------IRVQDQAIEQAIEETA 85
> ath:AT1G03330 small nuclear ribonucleoprotein D, putative /
snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like
protein, putative; K12621 U6 snRNA-associated Sm-like
protein LSm2
Length=93
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query 15 MKLVRFLMRLANETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKHSNP--VSMDHL 72
M + L + + +ELKN + GT+ VD +N L+N ++ + P +S+ +
Sbjct 1 MLFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
Query 73 TIRGSNIRYFILP-DSLPLDTL 93
IRGS +RY LP D + +D L
Sbjct 61 FIRGSVVRYVQLPKDGVDVDLL 82
> dre:415171 snrpd3, zgc:86943; small nuclear ribonucleoprotein
D3 polypeptide
Length=127
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 0/71 (0%)
Query 18 VRFLMRLANETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKHSNPVSMDHLTIRGS 77
++ L + E G V G ++ + +N + N+ +T + ++ + IRGS
Sbjct 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNVNCQMANITVTYRDGRVAQLEQVYIRGS 66
Query 78 NIRYFILPDSL 88
IR+ ILPD L
Sbjct 67 KIRFLILPDML 77
> cel:F32A5.7 lsm-4; LSM Sm-like protein family member (lsm-4);
K12623 U6 snRNA-associated Sm-like protein LSm4
Length=123
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query 26 NETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKHSNP-VSMDHLTIRGSNIRYFIL 84
N +++ELKNG +G + D MN HL +V T K + M +RGS I+Y +
Sbjct 13 NHPMLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKDGDKFFKMSEAYVRGSTIKYLRI 72
Query 85 PDSL 88
P+++
Sbjct 73 PETV 76
> pfa:PFI0475w small nuclear ribonucleoprotein (snRNP), putative;
K11088 small nuclear ribonucleoprotein D3
Length=116
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 0/61 (0%)
Query 28 TLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKHSNPVSMDHLTIRGSNIRYFILPDS 87
T+ +E K+G + GT++ + MN L+NV + K + ++ + IRG ++ + I PD
Sbjct 17 TISVETKSGILYRGTLLFAEDNMNCLLENVSVVKKDGKQILLEQVYIRGGSVSFMIFPDM 76
Query 88 L 88
L
Sbjct 77 L 77
> tpv:TP03_0516 U6 snRNA-associated protein; K12623 U6 snRNA-associated
Sm-like protein LSm4
Length=141
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query 30 VLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKH-SNPVSMDHLTIRGSNIRYFILPDSL 88
++ELKNG G + D MN H+ NV T K ++ +D IRG+ ++ LP+ +
Sbjct 17 LIELKNGETYSGILDSCDAFMNMHMVNVVCTSKSGTDFWKLDECFIRGNTVKSLRLPNEV 76
> sce:YER112W LSM4, SDB23, USS1; Lsm (Like Sm) protein; part of
heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p):
cytoplasmic Lsm1p complex involved in mRNA decay; nuclear
Lsm8p complex part of U6 snRNP and possibly involved in processing
tRNA, snoRNA, and rRNA; K12623 U6 snRNA-associated
Sm-like protein LSm4
Length=187
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 11/73 (15%)
Query 27 ETLVLELKNGTVVHGTIVGVDVAMNTHLKNV-----------KLTVKHSNPVSMDHLTIR 75
+ + +ELKNG ++ G + VD MN L NV + + S V ++ + IR
Sbjct 13 QQMQIELKNGEIIQGILTNVDNWMNLTLSNVTEYSEESAINSEDNAESSKAVKLNEIYIR 72
Query 76 GSNIRYFILPDSL 88
G+ I++ L D++
Sbjct 73 GTFIKFIKLQDNI 85
> pfa:PFE1020w U6 snRNA-associated sm-like protein Lsm2, putative;
K12621 U6 snRNA-associated Sm-like protein LSm2
Length=103
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query 15 MKLVRFLMRLA--NETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLT--VKHSNPVSMD 70
M F +LA N + +ELKN + G + VD +N L NV + K+ + +S+
Sbjct 1 MLFFTFFQQLAEKNHHVTVELKNDLQISGVLHSVDQYLNIKLTNVSVNNPEKYPHLLSIK 60
Query 71 HLTIRGSNIRYFILPDS 87
+RGS +RY LP +
Sbjct 61 SCFVRGSVVRYVFLPSN 77
> tgo:TGME49_078950 U6 snRNA associated Sm-like protein LSm4,
putative ; K12623 U6 snRNA-associated Sm-like protein LSm4
Length=214
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query 21 LMRLA-NETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKHSNPV-SMDHLTIRGSN 78
L+R A N +++ELK+G G + D MN HLK+ T K + IRG+
Sbjct 7 LLRAAQNRPMMVELKSGETYSGLLASCDGFMNLHLKDSVCTSKDGERFWKLSECYIRGNM 66
Query 79 IRYFILPDSL 88
++Y L D +
Sbjct 67 VKYIRLQDEV 76
Lambda K H
0.323 0.142 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2487377096
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
Posted date: Sep 17, 2011 2:57 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40