bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
164,496 sequences; 82,071,388 total letters
Query= Eten_2215_orf1
Length=475
Score E
Sequences producing significant alignments: (Bits) Value
pfa:PF14_0028 pre-mRNA splicing factor, putative; K12842 U2-as... 271 4e-72
ath:AT5G25060 RNA recognition motif (RRM)-containing protein; ... 268 5e-71
tgo:TGME49_040710 RRM domain-containing protein 248 3e-65
hsa:23350 U2SURP, KIAA0332, MGC133197, SR140, fSAPa; U2 snRNP-... 241 4e-63
mmu:67958 2610101N10Rik, AU023006, Sr140, U2surp; RIKEN cDNA 2... 241 4e-63
tpv:TP04_0751 hypothetical protein; K12842 U2-associated prote... 238 3e-62
dre:567461 KIAA0332, mp:zf637-1-000918, wu:fa03e02, wu:fb38b01... 237 6e-62
ath:AT5G10800 RNA recognition motif (RRM)-containing protein 232 2e-60
dre:100037380 zgc:163098; K12842 U2-associated protein SR140 231 5e-60
bbo:BBOV_III008490 17.m07743; surp module family protein; K128... 164 5e-40
cel:C07H6.4 hypothetical protein; K12842 U2-associated protein... 159 2e-38
dre:550495 wu:fb12a12, wu:fb16h02, wu:fb55a06, wu:fc67h01, wu:... 57.4 1e-07
hsa:378950 RBMY1E; RNA binding motif protein, Y-linked, family... 56.2 3e-07
hsa:378948 RBMY1B; RNA binding motif protein, Y-linked, family... 55.8 3e-07
hsa:378949 RBMY1D; RNA binding motif protein, Y-linked, family... 55.8 3e-07
cpv:cgd6_4490 U2 snRNP. Hsh49p, RRM domain containing protein ... 55.8 3e-07
hsa:5940 RBMY1A1, MGC181956, RBM1, RBM2, RBMY, RBMY1C, YRRM1, ... 55.8 3e-07
hsa:27288 RBMXL2, HNRNPG-T, HNRNPGT, HNRPGT; RNA binding motif... 55.8 3e-07
ath:AT3G14100 oligouridylate-binding protein, putative 55.8 4e-07
xla:432140 pabpc1-b, MGC130736, MGC79060, pab1, pabp, pabp1, p... 55.5 5e-07
ath:AT1G47490 ATRBP47C (ARABIDOPSIS THALIANA RNA-BINDING PROTE... 54.7 7e-07
dre:100330844 mCG19533-like; K13190 RNA-binding protein 15 54.7
dre:100136872 rbm15b, zgc:175165; RNA binding motif protein 15B 54.3 1e-06
ath:AT1G47500 ATRBP47C' (RNA-binding protein 47C'); RNA binding 54.3 1e-06
ath:AT1G49600 ATRBP47A (Arabidopsis thaliana RNA-binding prote... 53.9 1e-06
hsa:378951 RBMY1J; RNA binding motif protein, Y-linked, family... 53.9 1e-06
hsa:159163 RBMY1F, MGC33094, YRRM2; RNA binding motif protein,... 53.9 1e-06
ath:AT1G54080 UBP1A; oligouridylate-binding protein, putative;... 53.5 2e-06
mmu:19655 Rbmx; RNA binding motif protein, X chromosome; K1288... 53.5 2e-06
mmu:18458 Pabpc1, PABP, Pabp1, PabpI, Pabpl1, ePAB; poly(A) bi... 53.5 2e-06
sce:YNL016W PUB1, RNP1; Poly (A)+ RNA-binding protein, abundan... 53.5 2e-06
hsa:64783 RBM15, FLJ12479, FLJ21943, MGC119584, OTT, OTT1, SPE... 53.5 2e-06
ath:AT4G13860 glycine-rich RNA-binding protein, putative 53.5 2e-06
mmu:229700 Rbm15, C230088J01Rik, KIAA1438, mKIAA1438; RNA bind... 53.5 2e-06
ath:AT1G49760 PAB8; PAB8 (POLY(A) BINDING PROTEIN 8); RNA bind... 53.1 2e-06
ath:AT5G61030 GR-RBP3 (glycine-rich RNA-binding protein 3); AT... 53.1 2e-06
hsa:26986 PABPC1, PAB1, PABP, PABP1, PABPC2, PABPL1; poly(A) b... 53.1 2e-06
mmu:18459 Pabpc2, PABP, PABP+, Pabp2; poly(A) binding protein,... 52.8 3e-06
dre:798517 rbm15, im:7139999; RNA binding motif protein 15; K1... 52.4 3e-06
xla:379761 cirbp-a, MGC52663, XCIRP, XCIRP-1, cirbp, cirp, cir... 52.4 4e-06
mmu:19656 Rbmxrt, Hnrpg, MGC102184, Rbmx, Rbmxl1; RNA binding ... 52.4 4e-06
ath:AT5G54900 ATRBP45A (RNA-binding protein 45A); RNA binding 52.0 4e-06
mmu:76572 Rbmxl2, 1700012H05Rik, HNRNPG-T; RNA binding motif p... 52.0 5e-06
mmu:12696 Cirbp, Cirp, R74941; cold inducible RNA binding prot... 52.0 5e-06
hsa:1153 CIRBP, CIRP; cold inducible RNA binding protein; K131... 52.0 5e-06
xla:379896 pabpc1-a, MGC53109, pab1, pabp, pabp1, pabpc1, pabp... 52.0 6e-06
ath:AT5G19960 RNA recognition motif (RRM)-containing protein 51.6 7e-06
ath:AT3G19130 ATRBP47B (RNA-binding protein 47B); RNA binding 51.6 7e-06
dre:393856 pabpc1b, MGC77608, pabpc1, zgc:77608; poly A bindin... 51.6 7e-06
hsa:494115 RBMXL1, DKFZp547N1117, DKFZp667D0223, FLJ32614, RBM... 51.2 8e-06
> pfa:PF14_0028 pre-mRNA splicing factor, putative; K12842 U2-associated
protein SR140
Length=655
Score = 271 bits (693), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 157/475 (33%), Positives = 241/475 (50%), Gaps = 47/475 (9%)
Query 2 TPKRMPGRPGQKREIDSFLEEIKKRQELQGQKRRLYERLNLSRTEEERCALRFQIAALEN 61
T + G+ +EIDSFLEEIK +Q++ +++ L E+ L+++EEE+ + +I +E
Sbjct 94 TTENKNNTVGKVKEIDSFLEEIKLKQKILDERKSLKEKSQLAKSEEEKIKINKKITEIEQ 153
Query 62 ATRPRGAPPIDLEKESSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRR 121
P KE NLYLGNLSPE+TEE+LCQ+FGK G + SVKIMYPR +E+K++
Sbjct 154 NENLLSYIP---RKEKIANLYLGNLSPEVTEEYLCQKFGKFGKVNSVKIMYPRKDEDKKK 210
Query 122 NRNCGFVSFETRPQAESAKNSLDGKSFYGMVIRIGWGKALRPAFGATPTGLSGGFSDSPF 181
R GFV FE AE+AK++LDG G +IRIGW KA+ P FG
Sbjct 211 ARISGFVCFENIEDAENAKDALDGVEMCGNIIRIGWSKAI-PKFGYN------------- 256
Query 182 PSSGFSPPPPSAFSAEVPTATPTPPPPPEAELVEVQVPKDRKVKMVIDLLAKYVAEEGHV 241
+ S ++ + + ++ +P D+K K +IDLLAKYV EEG+
Sbjct 257 -----TKNEISNYNMDKYNTYNNVNVNKKVIII---IPDDKKTKRIIDLLAKYVTEEGYS 308
Query 242 FEQQVMEKFPPESGRLNFIYEKDSPDNIYYRWRVYAFGQGDTLRAWRVEPFFIYSGGRRW 301
FE+ + EK ++ +F++E S YY+WRV++F QGD+ + WR +PF I+S G +
Sbjct 309 FEETIKEK-EKDNPIFHFLFE-SSDLFYYYKWRVFSFAQGDSYKNWRTDPFHIFSNGYLY 366
Query 302 AAPPEKYFQQPAKKKAEAAEERSIRIAARGGERLSAADREELEELLRNITRDRASICAAM 361
PA +K + + + +L +L + + R SIC AM
Sbjct 367 VP--------PAIEKKNKGLLIKRKRGRNKRRHIDEKKKNKLINILSTLNKKRVSICRAM 418
Query 362 SFCMSHGSSSAEVCSCLTESLTLP--DTALTMRLARTYLLSDLLANSSAQTAHAWTYRYH 419
FC H S ++ ++ LT D +++ YLLSD+L N S + +W+YR H
Sbjct 419 IFCTRHSDYSLDIIKIISNFLTDVKYDLLKKVKINLIYLLSDILYNCSNEFFSSWSYRKH 478
Query 420 LEKNLPLIADRWSKEDLRLGVGVGGGSPRTQQEQWQGVERALYKMTKLWEAWGVY 474
+E LP I K ++ + G + +L + +W W +Y
Sbjct 479 IEDELPRIFYFLRKHIKKVDSKIKG----------KLFIDSLINIFNMWNCWAIY 523
> ath:AT5G25060 RNA recognition motif (RRM)-containing protein;
K12842 U2-associated protein SR140
Length=946
Score = 268 bits (684), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 170/490 (34%), Positives = 252/490 (51%), Gaps = 66/490 (13%)
Query 11 GQKREIDSFLEEIKKRQELQGQKRRLYERLNLSRTEEERCALRFQIAALENATRPRGAP- 69
G+ R ID+F+EE+K+ QE++ ER N R + + + L + P G P
Sbjct 117 GKTRNIDNFMEELKREQEMR-------ERRNQDRDRQGDSSPSSRFDELPDDFDPSGRPG 169
Query 70 PIDLEKESSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVS 129
D +TNLY+GNLSP++ E FL + FG+ G I SVKIM+PRT+EEKRR RNCGFVS
Sbjct 170 SFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVS 229
Query 130 FETRPQAESAKNSLDGKSFYGMVIRIGWGKALRPAFGATPTGLSGGFSDSPFPSSGFSPP 189
F R ++AK+ + G Y ++IGWGKA+ PS P
Sbjct 230 FMNRADGQAAKDEMQGIIVYEYELKIGWGKAV------------------SLPSQALPAP 271
Query 190 PPS------------AFSAEVPTATPTPPPPPEAELV--------EVQVPKDRKVKMVID 229
PP FS + T P +ELV V P+D ++ VID
Sbjct 272 PPGHMAIRSKEGCNLVFSGQTGPPIITSVPNQNSELVLTPNVPDITVVTPEDEHLRHVID 331
Query 230 LLAKYVAEEGHVFEQQVMEKFPPESGRLN----FIYEKDSPDNIYYRWRVYAFGQGDTLR 285
LA YV + FEQ +ME+ GR N F++E S ++ YY WR+Y+F QGDTL+
Sbjct 332 TLALYVLDGECAFEQAIMER-----GRGNPLFKFMFELGSKEHTYYVWRLYSFAQGDTLQ 386
Query 286 AWRVEPFFIYSGGRRWAAPPEKYFQQPAKKKAEAAEERSIRIAARGGER-LSAADREELE 344
WR EP+ + +G RW PP + +K A+ + R ER L+ R+E E
Sbjct 387 RWRTEPYIMITGSGRWIPPPLPVTRTQEHEKESASTYAAGRTRRAEVERTLTDPQRDEFE 446
Query 345 ELLRNITRDRASICAAMSFCMSHGSSSAEVCSCLTESLTLPDTALTMRLARTYLLSDLLA 404
++LR +T +R+ I AM F + + ++ EV LTESLTL +T++ ++AR L+SD+L
Sbjct 447 DMLRALTLERSQIKEAMGFALDNADAAGEVVEVLTESLTLKETSIPTKVARLMLVSDILH 506
Query 405 NSSAQTAHAWTYRYHLEKNLPLIADRWSKEDLRLGVGVGGGSPRTQQEQWQGVERALYKM 464
NSSA+ +A YR E LP I + ++ DL + T + + ++ + K+
Sbjct 507 NSSARVKNASAYRTKFEATLPDIMESFN--DLYRSI--------TGRITAEALKERVLKV 556
Query 465 TKLWEAWGVY 474
++W W ++
Sbjct 557 LQVWADWFLF 566
> tgo:TGME49_040710 RRM domain-containing protein
Length=859
Score = 248 bits (634), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 119/156 (76%), Positives = 140/156 (89%), Gaps = 1/156 (0%)
Query 12 QKREIDSFLEEIKKRQELQGQKRRLYERLNLSRTEEERCALRFQIAALENATRPRGAPPI 71
K+EIDSFLEEIKK+QEL +K++LY++L+ +RTE+ER LR Q+ A+ENATR GAPP+
Sbjct 222 HKKEIDSFLEEIKKKQELIDKKKQLYKQLSETRTEDERMVLRAQLTAIENATRLPGAPPV 281
Query 72 DLEKESSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFE 131
DLEKESSTNLYLGNLSPEITEEFLCQQFGK+G ITSVKIMYPRTEEEK+RNRNCGFVSFE
Sbjct 282 DLEKESSTNLYLGNLSPEITEEFLCQQFGKYGNITSVKIMYPRTEEEKKRNRNCGFVSFE 341
Query 132 TRPQAESAKNSLDGKSFYGMVIRIGWGKAL-RPAFG 166
+RPQAE+AK++LDG SFYGMVIRIGWGK++ RP
Sbjct 342 SRPQAEAAKHNLDGVSFYGMVIRIGWGKSVGRPVVA 377
> hsa:23350 U2SURP, KIAA0332, MGC133197, SR140, fSAPa; U2 snRNP-associated
SURP domain containing; K12842 U2-associated protein
SR140
Length=1029
Score = 241 bits (616), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 162/496 (32%), Positives = 248/496 (50%), Gaps = 71/496 (14%)
Query 16 IDSFLEEIKKRQELQGQKRRLYERLNLSRTEEERCALRFQIAALENATRPRGAPPI---- 71
++ F EE+K+ QE + ++ + RL SR E + Q +++ +R + +
Sbjct 204 LELFKEELKQIQEERDERHKTKGRL--SRFEPPQSDSDGQRRSMDAPSRRNRSSGVLDDY 261
Query 72 -----DLEKESSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCG 126
D+ S+TNLYLGN++P++ EE LCQ+FG+ G + SVKIM+PRT+EE+ R RNCG
Sbjct 262 APGSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERNCG 321
Query 127 FVSFETRPQAESAKNSLDGKSFYGMVIRIGWGKALRPAFGATPTGLSGGFSDSPFPSSG- 185
FV+F R AE A +L+GK +++GWGKA+ S P P SG
Sbjct 322 FVAFMNRRDAERALKNLNGKMIMSFEMKLGWGKAVPIPPHPIYIPPSMMEHTLPPPPSGL 381
Query 186 -FSPPPPSAFSAEVPTATPTPPPPPEAE---------LVEVQVPKDRKVKMVIDLLAKYV 235
F+ P P A P PPP E +V+V +P +R + +I + ++V
Sbjct 382 PFNAQPRERLKN--PNA-PMLPPPKNKEDFEKTLSQAIVKVVIPTERNLLALIHRMIEFV 438
Query 236 AEEGHVFEQQVMEKFPPESGRLNFIYEKDSPDNIYYRWRVYAFGQGDTLRAWRVEPFFIY 295
EG +FE +M + + F++E +P ++YYRW++Y+ QGD+ WR E F ++
Sbjct 439 VREGPMFEAMIMNR-EINNPMFRFLFENQTPAHVYYRWKLYSILQGDSPTKWRTEDFRMF 497
Query 296 SGGRRWAAPP--------------EKYFQQPAKKKAEAAEERSIRIAARGGERLSAADRE 341
G W PP E + ++P+KK A L R+
Sbjct 498 KNGSFWRPPPLNPYLHGMSEEQETEAFVEEPSKKGA-----------------LKEEQRD 540
Query 342 ELEELLRNITRDRASICAAMSFCMSHGSSSAEVCSCLTESLTLPDTALTMRLARTYLLSD 401
+LEE+LR +T + I AM FC+++ ++ E+ C+TESL++ T L ++AR YL+SD
Sbjct 541 KLEEILRGLTPRKNDIGDAMVFCLNNAEAAEEIVDCITESLSILKTPLPKKIARLYLVSD 600
Query 402 LLANSSAQTAHAWTYRYHLEKNLPLIADRWSKEDLRLGVGVGGGSPRTQQEQWQGVERAL 461
+L NSSA+ A+A YR E L I DL + RT Q Q
Sbjct 601 VLYNSSAKVANASYYRKFFETKLCQIF-----SDL-------NATYRTIQGHLQSENFKQ 648
Query 462 YKMT--KLWEAWGVYP 475
MT + WE W +YP
Sbjct 649 RVMTCFRAWEDWAIYP 664
> mmu:67958 2610101N10Rik, AU023006, Sr140, U2surp; RIKEN cDNA
2610101N10 gene; K12842 U2-associated protein SR140
Length=1029
Score = 241 bits (615), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 162/496 (32%), Positives = 248/496 (50%), Gaps = 71/496 (14%)
Query 16 IDSFLEEIKKRQELQGQKRRLYERLNLSRTEEERCALRFQIAALENATRPRGAPPI---- 71
++ F EE+K+ QE + ++ + RL SR E + Q +++ +R + +
Sbjct 204 LELFKEELKQIQEERDERHKTKGRL--SRFEPPQSDSDGQRRSMDVPSRRNRSSGVLDDY 261
Query 72 -----DLEKESSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCG 126
D+ S+TNLYLGN++P++ EE LCQ+FG+ G + SVKIM+PRT+EE+ R RNCG
Sbjct 262 APGSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERNCG 321
Query 127 FVSFETRPQAESAKNSLDGKSFYGMVIRIGWGKALRPAFGATPTGLSGGFSDSPFPSSG- 185
FV+F R AE A +L+GK +++GWGKA+ S P P SG
Sbjct 322 FVAFMNRRDAERALKNLNGKMIMSFEMKLGWGKAVPIPPHPIYIPPSMMEHTLPPPPSGL 381
Query 186 -FSPPPPSAFSAEVPTATPTPPPPPEAE---------LVEVQVPKDRKVKMVIDLLAKYV 235
F+ P P A P PPP E +V+V +P +R + +I + ++V
Sbjct 382 PFNAQPRERLKN--PNA-PMLPPPKNKEDFEKTLSQAIVKVVIPTERNLLALIHRMIEFV 438
Query 236 AEEGHVFEQQVMEKFPPESGRLNFIYEKDSPDNIYYRWRVYAFGQGDTLRAWRVEPFFIY 295
EG +FE +M + + F++E +P ++YYRW++Y+ QGD+ WR E F ++
Sbjct 439 VREGPMFEAMIMNR-EINNPMFRFLFENQTPAHVYYRWKLYSILQGDSPTKWRTEDFRMF 497
Query 296 SGGRRWAAPP--------------EKYFQQPAKKKAEAAEERSIRIAARGGERLSAADRE 341
G W PP E + ++P+KK A L R+
Sbjct 498 KNGSFWRPPPLNPYLHGMSEEQETEAFVEEPSKKGA-----------------LKEEQRD 540
Query 342 ELEELLRNITRDRASICAAMSFCMSHGSSSAEVCSCLTESLTLPDTALTMRLARTYLLSD 401
+LEE+LR +T + I AM FC+++ ++ E+ C+TESL++ T L ++AR YL+SD
Sbjct 541 KLEEILRGLTPRKNDIGDAMVFCLNNAEAAEEIVDCITESLSILKTPLPKKIARLYLVSD 600
Query 402 LLANSSAQTAHAWTYRYHLEKNLPLIADRWSKEDLRLGVGVGGGSPRTQQEQWQGVERAL 461
+L NSSA+ A+A YR E L I DL + RT Q Q
Sbjct 601 VLYNSSAKVANASYYRKFFETKLCQIF-----SDL-------NATYRTIQGHLQSENFKQ 648
Query 462 YKMT--KLWEAWGVYP 475
MT + WE W +YP
Sbjct 649 RVMTCFRAWEDWAIYP 664
> tpv:TP04_0751 hypothetical protein; K12842 U2-associated protein
SR140
Length=730
Score = 238 bits (608), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 148/462 (32%), Positives = 234/462 (50%), Gaps = 45/462 (9%)
Query 14 REIDSFLEEIKKRQELQGQKRRLYERLNLSRTEEERCALRFQIAALENATRPRGAPPIDL 73
REID+F+EEIK++Q +++ L +R + TE ER + ++ +EN GAP ++
Sbjct 109 REIDTFIEEIKEKQRTITERKELQKRFLTATTEYERYEINERLNRIENNLNT-GAPDLN- 166
Query 74 EKESSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFETR 133
+TN+++GNLSP +TE+ L F K G I ++++ RT+ N+ GFVSF T
Sbjct 167 ----TTNIHIGNLSPNVTEDILMSHFSKFGTIVGIRLIPSRTDTPPD-NKQTGFVSFMTH 221
Query 134 PQAESAKNSLDGKSFYGMVIRIGWGKAL-RPAFGATPTGLSGGFSDSPFPSSGFSPPPPS 192
QAE+AK +DG G +IGW K L +P P F+P
Sbjct 222 EQAENAKVGMDGVEILGFPCKIGWAKNLIKPMISTVPM---------------FAP---- 262
Query 193 AFSAEVPTATPTPPPPPEAELVEVQVPKDRKVKMVIDLLAKYVAEEGHVFEQQVMEKFPP 252
A P P PP + +EV VP + K +IDL +KYV+E G FE+ +M K P
Sbjct 263 ---ATPTMPIPQPMPPIIKDQLEVYVPTPQYKKRIIDLTSKYVSESGKDFEEVIM-KNEP 318
Query 253 ESGRLNFIYEKDSPDNIYYRWRVYAFGQGDTLRAWRVEPFFIYSGGRRWAAPPEKYFQQP 312
+G +F++++ +PD++YYRWRVY+ QGDT+R W F I + G+ + P Q
Sbjct 319 RNGLFSFVFDRFTPDSVYYRWRVYSLVQGDTMRDWNKNMFKISNFGKSYIPPN----QST 374
Query 313 AKKKAEAAEERSIRIAARGGERLSAADREELEELLRNITRDRASICAAMSFCMSHGSSSA 372
A A S + G LS + E + +LR +T R IC AM F +++ S+
Sbjct 375 THDTAPAHSLHSSSVIQNGNVILSEEKKNEFDSILRGVTSVRNDICNAMLFVINNSESAY 434
Query 373 EVCSCLTESLTLPDTALTMRLARTYLLSDLLANSSAQTAHAWTYRYHLEKNLPLIADRWS 432
+ L P+T + +++ Y++SD+L NSS+ ++W YR +EK+LP +
Sbjct 435 HLTDLLFNYFNDPNTNVQQKISILYVISDVLYNSSSSKQYSWVYRNSIEKHLPQLFHSIK 494
Query 433 KEDLRLGVGVGGGSPRTQQEQWQGVERALYKMTKLWEAWGVY 474
+ T + Q + A+ K+ +W++W VY
Sbjct 495 Q----------YKEKSTSKISSQQLIDAVMKLLSIWDSWTVY 526
> dre:567461 KIAA0332, mp:zf637-1-000918, wu:fa03e02, wu:fb38b01,
wu:fc75d03; si:dkey-181m9.9; K12842 U2-associated protein
SR140
Length=968
Score = 237 bits (605), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 153/473 (32%), Positives = 240/473 (50%), Gaps = 26/473 (5%)
Query 16 IDSFLEEIKKRQELQGQKRRLYERLN----LSRTEEERCALRFQIAALENATRPRGAP-P 70
++ F EE+K+ QE + ++ RL R++ L TE R + ++ AP
Sbjct 140 LELFKEELKQIQEERDERHRLKGRVSRFEPLPTTEGRRSSDGSSRRNRPSSVLDDSAPGS 199
Query 71 IDLEKESSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSF 130
D+ ++TNLYLGN++P++ EE LCQ+FG++G + SVKIM+PRT+EE+ R RNCGFV+F
Sbjct 200 HDVGDPTTTNLYLGNINPQMNEEMLCQEFGRYGPLASVKIMWPRTDEERARERNCGFVAF 259
Query 131 ETRPQAESAKNSLDGKSFYGMVIRIGWGKALRPAFGATPTGLSGGFSDSPFPSSG--FSP 188
TR AE A L+GK +++GWGK + S P P SG F+
Sbjct 260 MTRRDAERALKHLNGKMIMNFEMKLGWGKGVPIPPHPIYIPPSMMEHTLPPPPSGLPFNA 319
Query 189 PPPSAFSAEVPTATPTPPPPPEAE------LVEVQVPKDRKVKMVIDLLAKYVAEEGHVF 242
P P P E E +V+V +P +R + +I + ++V EG +F
Sbjct 320 QPKERLKNPNAAMPPPPKCKEEFEKTLSQAIVKVVIPTERNLLSLIHRMIEFVVREGPMF 379
Query 243 EQQVMEKFPPESGRLNFIYEKDSPDNIYYRWRVYAFGQGDTLRAWRVEPFFIYSGGRRWA 302
E +M + + F++E SP ++YYRW++Y QG++ W+ E F ++ G W
Sbjct 380 EAMIMNR-EINNPLYRFLFENQSPAHVYYRWKLYTILQGESPTKWKTEDFRMFKNGSLWR 438
Query 303 APPEKYFQQPAKKKAEAAEERSIRIAARGGERLSAADREELEELLRNITRDRASICAAMS 362
PP + + E ++ I +G L +R++LEELLR +T ++ I M
Sbjct 439 PPPLNPYLHGTPEDEEHEDDDDEEICKKGS--LKDEERDKLEELLRGLTPRKSDIAGGMF 496
Query 363 FCMSHGSSSAEVCSCLTESLTLPDTALTMRLARTYLLSDLLANSSAQTAHAWTYRYHLEK 422
FC++H ++ E+ C+ ESL++ T L ++AR YL+SD+L NSSA+ +A YR E
Sbjct 497 FCLTHADAAEEIVECIAESLSILKTPLPKKIARLYLVSDVLYNSSAKVTNASYYRKFFET 556
Query 423 NLPLIADRWSKEDLRLGVGVGGGSPRTQQEQWQGVERALYKMTKLWEAWGVYP 475
L I DL G Q + ++ + + WE W VYP
Sbjct 557 KLCQIFS-----DLNATYKTIQG-----HLQSENFKQRVMSCFRAWEEWAVYP 599
> ath:AT5G10800 RNA recognition motif (RRM)-containing protein
Length=947
Score = 232 bits (591), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 172/494 (34%), Positives = 252/494 (51%), Gaps = 71/494 (14%)
Query 11 GQKREIDSFLEEIKKRQELQGQKRRLYERLNLSRTEEERCALRFQIAALENATRPRG-AP 69
G+ R ID F+EE+K+ QE++ +RR +R N SR + L + P G
Sbjct 121 GKTRNIDHFVEELKREQEIR--ERRNQDREN-SRDHNSDNTSSSRFDELPDYFDPSGRLG 177
Query 70 PIDLEKESSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVS 129
+D +TNLY+ NLS ++ E FL + FG+ G I SVKIM+PRTEEEKRR R+CGFV+
Sbjct 178 SLDDGDPQTTNLYVVNLSSKVDENFLLRTFGRFGPIASVKIMWPRTEEEKRRERHCGFVA 237
Query 130 FETRPQAESAKNSLDGKSFYGMVIRIGWGKALRPAFGATPTGLSGGFSDSPFPSSGFSPP 189
F R E+AK + G Y ++IGWGK + PS P
Sbjct 238 FMNRADGEAAKEKMQGIIVYEYELKIGWGKVVF------------------LPSQALPAP 279
Query 190 PPSAFSAE-------VPTATPTPP----PPPEAELV--------EVQVPKDRKVKMVIDL 230
PP + + + T PP P +ELV V P+D +K +ID
Sbjct 280 PPGHMAIRSKEGCNLIFSVTSGPPMNSVPNQNSELVLTPNVPDITVISPEDEHLKQIIDT 339
Query 231 LAKYVAEEGHVFEQQVMEKFPPESGR----LNFIYEKDSPDNIYYRWRVYAFGQGDTLRA 286
+A V + G FEQ +ME+ GR NF++E S ++ YY WR+Y+F QGDTL+
Sbjct 340 MALNVLDGGCAFEQAIMER-----GRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQR 394
Query 287 WRVEPFFIYSGGRRWAAPPEKYFQQPAKKKAEAAEERSIRIAA------RGGERLSAADR 340
WR EP+ + +G RW PP PA + E +E AA + L+ + R
Sbjct 395 WRTEPYIMIAGSGRWIPPP-----LPATRSPEHGKESRGTYAAGKSRCTEAEQTLTDSQR 449
Query 341 EELEELLRNITRDRASICAAMSFCMSHGSSSAEVCSCLTESLTLPDTALTMRLARTYLLS 400
+E E++LR +T +R+ I AM F + + ++ EV LTESLTL +T++ ++AR L+S
Sbjct 450 DEFEDMLRALTLERSQIREAMGFALDNAEAAGEVVEVLTESLTLKETSIPTKVARLMLVS 509
Query 401 DLLANSSAQTAHAWTYRYHLEKNLPLIADRWSKEDLRLGVGVGGGSPRTQQEQWQGVERA 460
D++ NSSA+ +A YR E LP I + ++ L V G R E + ER
Sbjct 510 DIIHNSSARVKNASAYRTKFEATLPDIMESFND----LYHSVHG---RITAEALR--ERV 560
Query 461 LYKMTKLWEAWGVY 474
L K+ ++W W ++
Sbjct 561 L-KVLQVWADWFLF 573
> dre:100037380 zgc:163098; K12842 U2-associated protein SR140
Length=874
Score = 231 bits (589), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 147/414 (35%), Positives = 224/414 (54%), Gaps = 37/414 (8%)
Query 77 SSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFETRPQA 136
++TNLY+G ++P++TEE LC++FGK+G + SVKIM+PRTEEE+ R N GFV+F TR A
Sbjct 164 NTTNLYIGCINPKMTEEMLCKEFGKYGPLASVKIMWPRTEEERTRVTNRGFVAFMTRKDA 223
Query 137 ESAKNSLDGKSFYGMVIRIGWGKALR--PAFGATPTGLSGGFSDSPFPSSG--FSPPPPS 192
E A +LDGK+ G +++GWGKA+R P TP G+ + +P P SG F+ P
Sbjct 224 ERALAALDGKTVMGFEMKLGWGKAVRIPPQPLYTPIGVLK--TTAPPPPSGLPFNAQPRD 281
Query 193 AFSAEVPTATPTPPPPPEAE---------LVEVQVPKDRKVKMVIDLLAKYVAEEGHVFE 243
F + T P + +V V +P +R + +I + ++V EG +FE
Sbjct 282 RFRNDF-----TKPRSRSQDDFYKTLSEAVVTVVIPPERNLLGLIHRMIEFVVREGPMFE 336
Query 244 QQVM--EKFPPESGRLNFIYEKDSPDNIYYRWRVYAFGQGDTLRAWRVEPFFIYSGGRRW 301
+M EK P+ F+++ S +++YYRW++Y+ QG+ WR F ++ GG W
Sbjct 337 AMIMNREKNNPD---FRFLFDNKSQEHVYYRWKLYSILQGENPNNWRTSSFRMFRGGSLW 393
Query 302 AAPPEKYFQQPAKKKAEAAEERSIRIAARGGERLSAADREELEELLRNITRDRASICAAM 361
P + ++ EA+ +G +L + RE+LE LLR +T R I AM
Sbjct 394 KPPLLNPYLHGDEEPEEASFPSPEEEPKKG--QLKSEHREKLEVLLRGLTPRRDEIGDAM 451
Query 362 SFCMSHGSSSAEVCSCLTESLTLPDTALTMRLARTYLLSDLLANSSAQTAHAWTYRYHLE 421
FC+ ++ E+ SC+TESL++ T L ++AR YL+SD+L NS A+ A+A YR E
Sbjct 452 LFCLERAEAAEEIVSCITESLSIAHTPLQKKIARLYLISDILYNSCAKVANASYYRKFFE 511
Query 422 KNLPLIADRWSKEDLRLGVGVGGGSPRTQQEQWQGVERALYKMTKLWEAWGVYP 475
LP I S+ R Q EQ++ + + + WE W VYP
Sbjct 512 TKLPEIFGDISE-------AYRNIQARLQAEQFK---QRIMGCFRAWEDWAVYP 555
> bbo:BBOV_III008490 17.m07743; surp module family protein; K12842
U2-associated protein SR140
Length=717
Score = 164 bits (416), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 129/470 (27%), Positives = 211/470 (44%), Gaps = 60/470 (12%)
Query 10 PGQKREIDSFLEEIKKRQELQGQKRRLYERLNLSRTEEER-CA--LRFQIAALENATRPR 66
PG+ +EID+F++E+K++Q+ Q ++ L + S T R C+ + + I + ++ +
Sbjct 99 PGKTKEIDAFIQELKEKQQRQEAEKALQRKGVSSATRTSRFCSPKVDYDIHKQDTLSQSK 158
Query 67 GAPPIDLEKESSTNLYLGNLSPEITEEFLCQQF-GKHGVITSVKIMYPRTEEEKRRNRNC 125
A LY+ NL P ++F ++ ++G I V I+ P T +
Sbjct 159 NA------------LYISNL-PLSVQQFDVERLCSRYGAIDHVSIV-PVTT--GPHDSVY 202
Query 126 GFVSFETRPQAESAKNSLDGKSFYGMVIRIGWGKALRPAFGATPTGLSGGFSDSPFPSSG 185
V + A AK+ LDGK YG I WG GA P+ +G +
Sbjct 203 AVVIYRDPTDAACAKDDLDGKEIYGRRCEINWGYQ-----GAIPSQFTGQMHND------ 251
Query 186 FSPPPPSAFSAEVPTATPTPPPPPEAELVEVQVPKDRKVKMVIDLLAKYVAEEGHVFEQQ 245
+ T P ++ V+V +P + + VIDL A+YVAE G +E
Sbjct 252 ---------------TSTTRPLLAYSDTVDVCMPMNPAKRAVIDLTARYVAEIGADYEYL 296
Query 246 VMEKFPPESGRLNFIYEKDSPDNIYYRWRVYAFGQGDTLRAWRVEPFFIYSGGRRWAAPP 305
++ G +F++++ SP+++YYRW+VY+ Q DT WR + F + + G W PP
Sbjct 297 LISN-EKRDGLFSFLHDRCSPEHVYYRWKVYSLLQNDTDSKWRTDGFCVITDGLVWY-PP 354
Query 306 EKYFQQPAKKKAEAAEERSIRIAARGGERLSAADREELEELLRNITRDRASICAAMSFCM 365
Q + S+ + G + ++ +LE +L N T R I AM F +
Sbjct 355 TDLTQPRVPDPLLGIDPASL--SQNGKTPMQQSELRKLESILSNATTIRGYIADAMMFMI 412
Query 366 SHGSSSAEVCSCLTESLTLPDTALTMRLARTYLLSDLLANSSAQTAHAWTYRYHLEKNLP 425
+HG S+ +V CL E + + +++R Y+LSD+L N+SA W YR EK +P
Sbjct 413 NHGESAVQVTDCLVEYIMKDSPTVDTKISRLYILSDVLYNTSASHQFGWIYRLTFEKKIP 472
Query 426 LIADRWSKEDLRLGVGVGGGSPRTQQEQWQGVERALYKMTKLWEAWGVYP 475
+ +E ++ S QE VER L W W YP
Sbjct 473 EVFAHI-REYIK-----SSTSKIAVQELISCVERIL----NAWHQWDAYP 512
> cel:C07H6.4 hypothetical protein; K12842 U2-associated protein
SR140
Length=933
Score = 159 bits (403), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 135/520 (25%), Positives = 225/520 (43%), Gaps = 95/520 (18%)
Query 39 RLNLSRTEEER---CALRFQI--AALENATRPRGAPPIDL---------EKESSTNLYLG 84
++ L R +E+R LR + ++ A R AP ++ + +TN+Y+
Sbjct 146 KMELQRVQEDREKRKDLRHHLEKVGMDQAVVERLAPTVERGFQGTSEFDDDPYTTNVYVS 205
Query 85 NLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFETRPQAESAKNSLD 144
N+ +TE+ L FG G + ++KI+YPR+EEE+RR C FV+F +R + +
Sbjct 206 NIPHSVTEDDLLFTFGSFGPLAALKILYPRSEEERRRPHICAFVAFMSRADVDRFMAEVR 265
Query 145 GKSFYGMVIRIGWGKALR-PAFGA-TPTGLSGGFSDSPFPSSGFSPPPPSAFSAEVPTAT 202
IR + + ++ PA P L P + F+ P A + +
Sbjct 266 VIIVRNEPIRFAFARPVQIPAIPYYIPPVLHALQHPDPTSNLPFNAQPDCADAKKFLEKY 325
Query 203 PTPPP----PPEAEL-------------VEVQVPKDRKVKMVIDLLAKYVAEEGHVFEQQ 245
T PP P + + + V VP DRK+ V+D +A YV EG FE
Sbjct 326 NTFPPMHALPTKGQYGYEDFTELIRNSQIRVVVPPDRKLVRVMDRMAVYVVTEGPQFEAM 385
Query 246 VM-EKFPPESGRLNFIYEKDSPDNIYYRWRVYAFGQGDTLRAWRVEPFFIYSGGRRW--- 301
+ E+F ++ F+++ S ++YYRWR+Y+ QGDT+ WR PF ++ G W
Sbjct 386 ICAEEF--QNPMFQFLWDNTSALHVYYRWRIYSLLQGDTIEEWRRTPFRMFENGSWWIPP 443
Query 302 --------AAPPEKYFQQPAKKKAEAAEERSIRIAARGGE-------------------- 333
A P E Y + + + RGGE
Sbjct 444 YPINELRDAMPKELYHMNCLRTYPDKWMKVRDGGQRRGGESSKNRRNSDAEKEERKMRRE 503
Query 334 -----------------RLSAADREELEELLRNITRDRASICAAMSFCMSHGSSSAEVCS 376
R+S R++LE L+R +T ++ SI A M +C+ + +AE+C
Sbjct 504 EEKERKRREKNEKKRNNRMSDKRRDKLETLIRELTPEKTSIAATMVWCIQNAKYAAEICE 563
Query 377 CLTESLTLPDTALTMRLARTYLLSDLLANSSAQTA-HAWTYRYHLEKNLPLIADRWSKED 435
C+ +SLT+ D L +++R YL++D+L+N + + YR H E L I
Sbjct 564 CVYDSLTIEDIPLYKKISRLYLINDILSNCVQRNVRDVFLYRSHFEALLEKIF------- 616
Query 436 LRLGVGVGGGSPRTQQEQWQGVERALYKMTKLWEAWGVYP 475
+ +G R +QEQ++ +++ +E VYP
Sbjct 617 VAVGKAYRAIPSRIKQEQFKQRVMCVFRN---FEEMAVYP 653
> dre:550495 wu:fb12a12, wu:fb16h02, wu:fb55a06, wu:fc67h01, wu:fj10g10,
zgc:109887; zgc:112425; K13195 cold-inducible RNA-binding
protein
Length=185
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query 81 LYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFETRPQAESAK 140
L++G LS + TE+ L F K+GVIT+V + R E R+R GFV+FE A+ A
Sbjct 7 LFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNR---ETNRSRGFGFVTFENPDDAKDAL 63
Query 141 NSLDGKSFYGMVIRI 155
++GKS G IR+
Sbjct 64 EGMNGKSVDGRTIRV 78
> hsa:378950 RBMY1E; RNA binding motif protein, Y-linked, family
1, member E
Length=496
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query 73 LEKESSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFET 132
+E + L++G L+ E E+ L FGKHG I+ V ++ RT ++R F++FE
Sbjct 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS----KSRGFAFITFEN 57
Query 133 RPQAESAKNSLDGKSFYGMVIRIGWGKALRPAF 165
A++A ++GKS +G I++ +A +P+F
Sbjct 58 PADAKNAAKDMNGKSLHGKAIKV--EQAKKPSF 88
> hsa:378948 RBMY1B; RNA binding motif protein, Y-linked, family
1, member B
Length=496
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query 73 LEKESSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFET 132
+E + L++G L+ E E+ L FGKHG I+ V ++ RT ++R F++FE
Sbjct 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS----KSRGFAFITFEN 57
Query 133 RPQAESAKNSLDGKSFYGMVIRIGWGKALRPAF 165
A++A ++GKS +G I++ +A +P+F
Sbjct 58 PADAKNAAKDMNGKSLHGKAIKV--EQAKKPSF 88
> hsa:378949 RBMY1D; RNA binding motif protein, Y-linked, family
1, member D
Length=496
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query 73 LEKESSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFET 132
+E + L++G L+ E E+ L FGKHG I+ V ++ RT ++R F++FE
Sbjct 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS----KSRGFAFITFEN 57
Query 133 RPQAESAKNSLDGKSFYGMVIRIGWGKALRPAF 165
A++A ++GKS +G I++ +A +P+F
Sbjct 58 PADAKNAAKDMNGKSLHGKAIKV--EQAKKPSF 88
> cpv:cgd6_4490 U2 snRNP. Hsh49p, RRM domain containing protein
; K12831 splicing factor 3B subunit 4
Length=216
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 6/89 (6%)
Query 70 PIDLEKESSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVS 129
P+D+ NLY+GNLSPEI E+FL F G I S+KI+ ++ + +N F++
Sbjct 105 PLDI----GANLYVGNLSPEIDEKFLFYLFSNFGKILSLKIV--GNDQSSQSPKNSAFIN 158
Query 130 FETRPQAESAKNSLDGKSFYGMVIRIGWG 158
F + +++SA +L+G+ F I + +
Sbjct 159 FSSFQESDSAIQALNGQFFCNQQISVSYA 187
Score = 35.4 bits (80), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query 74 EKESSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFETR 133
E+ LY GNL ++ EE L + F + G + SV I PR ++ + GF+ FE
Sbjct 18 ERNQEATLYCGNLENKVDEEMLAELFSQCGPVKSVHI--PR-DKVTGHHSGFGFIEFEFV 74
Query 134 PQAESAKNSLDGKSFYGMVIR 154
E A+ ++ + IR
Sbjct 75 SDVEYAQKVMNSIKLFTKQIR 95
> hsa:5940 RBMY1A1, MGC181956, RBM1, RBM2, RBMY, RBMY1C, YRRM1,
YRRM2; RNA binding motif protein, Y-linked, family 1, member
A1
Length=496
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query 73 LEKESSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFET 132
+E + L++G L+ E E+ L FGKHG I+ V ++ RT ++R F++FE
Sbjct 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS----KSRGFAFITFEN 57
Query 133 RPQAESAKNSLDGKSFYGMVIRIGWGKALRPAF 165
A++A ++GKS +G I++ +A +P+F
Sbjct 58 PADAKNAAKDMNGKSLHGKAIKV--EQAKKPSF 88
> hsa:27288 RBMXL2, HNRNPG-T, HNRNPGT, HNRPGT; RNA binding motif
protein, X-linked-like 2
Length=392
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 5/93 (5%)
Query 73 LEKESSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFET 132
+E + L++G L+ E E+ L +FGK+G I V +M + E ++R FV+FE+
Sbjct 2 VEADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLM---KDRETNKSRGFAFVTFES 58
Query 133 RPQAESAKNSLDGKSFYGMVIRIGWGKALRPAF 165
A++A ++GKS G I++ +A +PAF
Sbjct 59 PADAKAAARDMNGKSLDGKAIKV--AQATKPAF 89
> ath:AT3G14100 oligouridylate-binding protein, putative
Length=427
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query 74 EKESSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFETR 133
+ S N+++G+LSPE+T+ L Q F + ++M+ +++ R+R GFVSF +
Sbjct 139 DTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMW---DQKTGRSRGFGFVSFRNQ 195
Query 134 PQAESAKNSLDGKSFYGMVIRIGW 157
A++A N ++GK IR W
Sbjct 196 QDAQTAINEMNGKWLSSRQIRCNW 219
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query 65 PRGAPPIDLEKESSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRN 124
P G P + + ++Y+GN+ ++TE L + F G + S K++ ++ +
Sbjct 45 PSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLI-------RKDKSS 97
Query 125 CGFVSFETRPQAESAKNSLDGKSFYGMVIRIGWGKA 160
GFV + R A A SL+G+ +G I++ W A
Sbjct 98 YGFVHYFDRRSAALAILSLNGRHLFGQPIKVNWAYA 133
Score = 38.9 bits (89), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 12/88 (13%)
Query 79 TNLYLGNLSPEITEEFLCQQFGK--HGVITSVKIMYPRTEEEKRRNRNCGFVSFETRPQA 136
T +Y+GNL+PE+T+ L + F GVI V++ +R++ GFV + T P+A
Sbjct 265 TTVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRV---------QRDKGFGFVRYNTHPEA 315
Query 137 ESAKNSLDGKSF-YGMVIRIGWGKALRP 163
A + + + + I+ WG P
Sbjct 316 ALAIQMGNTQPYLFNRQIKCSWGNKPTP 343
> xla:432140 pabpc1-b, MGC130736, MGC79060, pab1, pabp, pabp1,
pabpc2; poly(A) binding protein, cytoplasmic 1; K13126 polyadenylate-binding
protein
Length=633
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Query 79 TNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFETRPQAES 138
TN+Y+ N ++ +E L + FG++G SVK+M ++ ++R GFVSFE A+
Sbjct 191 TNVYIKNFGEDMDDERLKEWFGQYGAALSVKVM----TDDHGKSRGFGFVSFERHEDAQK 246
Query 139 AKNSLDGKSFYGMVIRIG 156
A + ++GK G I +G
Sbjct 247 AVDDMNGKDLNGKAIFVG 264
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query 80 NLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFETRPQAESA 139
+LY+G+L P++TE L ++F G I S+++ + RR+ +V+F+ AE A
Sbjct 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVC---RDMITRRSLGYAYVNFQQPADAERA 68
Query 140 KNSLDGKSFYGMVIRIGWGK 159
++++ G +RI W +
Sbjct 69 LDTMNFDVIKGKPVRIMWSQ 88
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 56/132 (42%), Gaps = 8/132 (6%)
Query 73 LEKESSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFET 132
+ + NLY+ NL I +E L ++F G ITS K+M E R++ GFV F +
Sbjct 288 ITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMM-----EGGRSKGFGFVCFSS 342
Query 133 RPQAESAKNSLDGKSFYG--MVIRIGWGKALRPAFGATPTGLSGGFSDSPFPSSG-FSPP 189
+A A ++G+ + + + K R A P P + PP
Sbjct 343 PEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRVPNPVINPYQPP 402
Query 190 PPSAFSAEVPTA 201
P S F A +P A
Sbjct 403 PSSYFMAAIPPA 414
Score = 38.9 bits (89), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query 73 LEKESSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFET 132
L K N+++ NL I + L F G I S K++ ++ ++ GFV FET
Sbjct 93 LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC-----DENGSKGYGFVHFET 147
Query 133 RPQAESAKNSLDGKSFYGMVIRIGWGKA 160
+ AE A + ++G + +G K+
Sbjct 148 QEAAERAIDKMNGMLLNDRKVFVGRFKS 175
> ath:AT1G47490 ATRBP47C (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN
47C); RNA binding
Length=432
Score = 54.7 bits (130), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 47/97 (48%), Gaps = 16/97 (16%)
Query 63 TRPRGAPPIDLEKESSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRN 122
TRP G D+ +T +++G L +T+E L Q F + G I SVKI
Sbjct 295 TRPEG----DI---MNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPV---------G 338
Query 123 RNCGFVSFETRPQAESAKNSLDGKSFYGMVIRIGWGK 159
+ CGFV F RP AE A L+G +R+ WG+
Sbjct 339 KGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGR 375
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query 81 LYLGNLSPEITEEFLCQQFG-KHGVITSVKIMYPRTEEEKRRNRNCGFVSFETRPQAESA 139
+++G+LSP++++ L + F K+ + + K++ + R++ GFV F + A
Sbjct 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVV---LDANTGRSKGYGFVRFGDENERTKA 255
Query 140 KNSLDGKSFYGMVIRIG 156
++G +RIG
Sbjct 256 MTEMNGVKCSSRAMRIG 272
> dre:100330844 mCG19533-like; K13190 RNA-binding protein 15
Length=815
Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 10/109 (9%)
Query 58 ALENATRPRG--APPIDLEKE----SSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIM 111
ALE TR P DL+ E ++ NL++GNL ITE L Q F K+G+I V I
Sbjct 242 ALEERTRAYAYQLPEEDLKPEDDQRATRNLFIGNLDHNITEVELRQGFDKYGIIEEVVIK 301
Query 112 YPRTEEEKRRNRNCGFVSFETRPQAESAKNSLDGKSFYGMVIRIGWGKA 160
P + + F+ F+ A AK ++ G+ G I+IG+GKA
Sbjct 302 RP----ARGQGGAYAFLKFQNLDMAHRAKVAMQGRMINGNPIKIGYGKA 346
> dre:100136872 rbm15b, zgc:175165; RNA binding motif protein
15B
Length=402
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query 74 EKESSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFETR 133
++ ++ NL++GNL ITE L Q F K+G+I V I P + + F+ F+
Sbjct 36 DQRATRNLFIGNLDHNITEVELRQGFDKYGIIEEVVIKRP----ARGQGGAYAFLKFQNL 91
Query 134 PQAESAKNSLDGKSFYGMVIRIGWGKA 160
A AK ++ G+ G I+IG+GKA
Sbjct 92 DMAHRAKVAMQGRMINGNPIKIGYGKA 118
> ath:AT1G47500 ATRBP47C' (RNA-binding protein 47C'); RNA binding
Length=434
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Query 78 STNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFETRPQAE 137
+T +++G L +T+E L Q F + G I SVKI + CGFV F RP AE
Sbjct 305 NTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPV---------GKGCGFVQFVNRPNAE 355
Query 138 SAKNSLDGKSFYGMVIRIGWGK 159
A L+G +R+ WG+
Sbjct 356 EALEKLNGTVIGKQTVRLSWGR 377
> ath:AT1G49600 ATRBP47A (Arabidopsis thaliana RNA-binding protein
47a); RNA binding
Length=445
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query 72 DLEKESSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFE 131
D E +ST +++G L ++TEE L Q F G + SVKI + CGFV F
Sbjct 321 DGESNNST-IFVGGLDADVTEEDLMQPFSDFGEVVSVKIPV---------GKGCGFVQFA 370
Query 132 TRPQAESAKNSLDGKSFYGMVIRIGWGKA 160
R AE A +L+G +R+ WG++
Sbjct 371 NRQSAEEAIGNLNGTVIGKNTVRLSWGRS 399
Score = 40.4 bits (93), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 91/227 (40%), Gaps = 22/227 (9%)
Query 18 SFLEEIKKRQELQGQKRRLYERLNLSRTEEERCALRFQIAALENATRP---RGAPPIDLE 74
S ++ I+ +Q Q + E L SR+ E F + NA +P A E
Sbjct 146 SSVKVIRNKQTCQSEGYGFVEFL--SRSAAEEALQSFSGVTMPNAEQPFRLNWASFSTGE 203
Query 75 KESSTN-----LYLGNLSPEITEEFLCQQF-GKHGVITSVKIMYPRTEEEKRRNRNCGFV 128
K +S N +++G+L+P++++ L + F G++ + K++ + R++ GFV
Sbjct 204 KRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVV---IDSNTGRSKGYGFV 260
Query 129 SFETRPQAESAKNSLDGKSFYGMVIRIGWGKALRPAF-----GATPTGLSGGFSDSPFPS 183
F + A ++G +R+G R A G+ L+GG + S
Sbjct 261 RFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMS 320
Query 184 SGFSPPPP---SAFSAEVPTATPTPPPPPEAELVEVQVPKDRKVKMV 227
G S A+V P E+V V++P + V
Sbjct 321 DGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCGFV 367
> hsa:378951 RBMY1J; RNA binding motif protein, Y-linked, family
1, member J
Length=496
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 6/93 (6%)
Query 73 LEKESSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFET 132
+E + L++G L+ E E+ L FGKHG I+ V ++ RT ++R F++FE
Sbjct 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS----KSRGFAFITFEN 57
Query 133 RPQAESAKNSLDGKSFYGMVIRIGWGKALRPAF 165
A++A ++G S +G I++ +A +P+F
Sbjct 58 PADAKNAAKDMNGTSLHGKAIKV--EQAKKPSF 88
> hsa:159163 RBMY1F, MGC33094, YRRM2; RNA binding motif protein,
Y-linked, family 1, member F
Length=496
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 6/93 (6%)
Query 73 LEKESSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFET 132
+E + L++G L+ E E+ L FGKHG I+ V ++ RT ++R F++FE
Sbjct 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS----KSRGFAFITFEN 57
Query 133 RPQAESAKNSLDGKSFYGMVIRIGWGKALRPAF 165
A++A ++G S +G I++ +A +P+F
Sbjct 58 PADAKNAAKDMNGTSLHGKAIKV--EQAKKPSF 88
> ath:AT1G54080 UBP1A; oligouridylate-binding protein, putative;
K13201 nucleolysin TIA-1/TIAR
Length=426
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query 74 EKESSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFETR 133
+ S N+++G+LSPE+T+ L F + ++M+ +++ R+R GFVSF +
Sbjct 143 DTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMW---DQKTGRSRGFGFVSFRNQ 199
Query 134 PQAESAKNSLDGKSFYGMVIRIGW 157
A++A N ++GK IR W
Sbjct 200 QDAQTAINEMNGKWVSSRQIRCNW 223
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query 65 PRGAPPIDLEKESSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRN 124
P G P + + ++Y GN+ ++TE L + F G I S K++ ++ +
Sbjct 49 PSGNLPPGFDPTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLI-------RKDKSS 101
Query 125 CGFVSFETRPQAESAKNSLDGKSFYGMVIRIGWGKA 160
GFV + R A A +L+G+ +G +++ W A
Sbjct 102 YGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWAYA 137
Score = 39.7 bits (91), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 12/89 (13%)
Query 79 TNLYLGNLSPEITEEFLCQQFGK--HGVITSVKIMYPRTEEEKRRNRNCGFVSFETRPQA 136
T +Y+GNLSPE+T+ L + F GVI V++ +R++ GFV + T +A
Sbjct 269 TTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRV---------QRDKGFGFVRYNTHDEA 319
Query 137 ESAKNSLDGKSF-YGMVIRIGWGKALRPA 164
A + + F + IR WG P+
Sbjct 320 ALAIQMGNAQPFLFSRQIRCSWGNKPTPS 348
> mmu:19655 Rbmx; RNA binding motif protein, X chromosome; K12885
heterogeneous nuclear ribonucleoprotein G
Length=391
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query 73 LEKESSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFET 132
+E + L++G L+ E E+ L FGK+G I V +M + E ++R FV+FE+
Sbjct 2 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLM---KDRETNKSRGFAFVTFES 58
Query 133 RPQAESAKNSLDGKSFYGMVIRIGWGKALRPAFGATPTGL 172
A+ A ++GKS G I++ +A +P+F + GL
Sbjct 59 PADAKDAARDMNGKSLDGKAIKV--EQATKPSFESGRRGL 96
> mmu:18458 Pabpc1, PABP, Pabp1, PabpI, Pabpl1, ePAB; poly(A)
binding protein, cytoplasmic 1; K13126 polyadenylate-binding
protein
Length=636
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query 79 TNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFETRPQAES 138
TN+Y+ N ++ +E L + FGK G SVK+M +E +++ GFVSFE A+
Sbjct 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query 139 AKNSLDGKSFYGMVIRIG 156
A + ++GK G I +G
Sbjct 247 AVDEMNGKELNGKQIYVG 264
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query 80 NLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFETRPQAESA 139
+LY+G+L P++TE L ++F G I S+++ + RR+ +V+F+ AE A
Sbjct 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVC---RDMITRRSLGYAYVNFQQPADAERA 68
Query 140 KNSLDGKSFYGMVIRIGWGK 159
++++ G +RI W +
Sbjct 69 LDTMNFDVIKGKPVRIMWSQ 88
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query 79 TNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFETRPQAES 138
NLY+ NL I +E L ++F G ITS K+M E R++ GFV F + +A
Sbjct 294 VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-----EGGRSKGFGFVCFSSPEEATK 348
Query 139 AKNSLDGK 146
A ++G+
Sbjct 349 AVTEMNGR 356
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query 73 LEKESSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFET 132
L K N+++ NL I + L F G I S K++ ++ ++ GFV FET
Sbjct 93 LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC-----DENGSKGYGFVHFET 147
Query 133 RPQAESAKNSLDGKSFYGMVIRIGWGKA 160
+ AE A ++G + +G K+
Sbjct 148 QEAAERAIEKMNGMLLNDRKVFVGRFKS 175
> sce:YNL016W PUB1, RNP1; Poly (A)+ RNA-binding protein, abundant
mRNP-component protein that binds mRNA and is required for
stability of many mRNAs; component of glucose deprivation
induced stress granules, involved in P-body-dependent granule
assembly; K13201 nucleolysin TIA-1/TIAR
Length=453
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query 81 LYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFETRPQAESAK 140
LY+GNL ITE+ L Q F G I ++KIM ++ +N N FV + A A
Sbjct 77 LYVGNLDKAITEDILKQYFQVGGPIANIKIMI----DKNNKNVNYAFVEYHQSHDANIAL 132
Query 141 NSLDGKSFYGMVIRIGW 157
+L+GK +++I W
Sbjct 133 QTLNGKQIENNIVKINW 149
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query 76 ESSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFETRPQ 135
+ + NL++G+L+ + +E L F S +M+ + + +R GFVSF ++
Sbjct 159 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMW---DMQTGSSRGYGFVSFTSQDD 215
Query 136 AESAKNSLDGKSFYGMVIRIGW 157
A++A +S+ G+ G +RI W
Sbjct 216 AQNAMDSMQGQDLNGRPLRINW 237
Score = 39.3 bits (90), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 38/94 (40%), Gaps = 15/94 (15%)
Query 66 RGAPPIDLEKESSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNC 125
R APP T Y+GN+ TE L F G I K YP + C
Sbjct 334 RSAPP------RVTTAYIGNIPHFATEADLIPLFQNFGFILDFK-HYPE--------KGC 378
Query 126 GFVSFETRPQAESAKNSLDGKSFYGMVIRIGWGK 159
F+ ++T QA +L F G +R GWGK
Sbjct 379 CFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 412
> hsa:64783 RBM15, FLJ12479, FLJ21943, MGC119584, OTT, OTT1, SPEN;
RNA binding motif protein 15; K13190 RNA-binding protein
15
Length=969
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query 74 EKESSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFETR 133
++ ++ L+LGNL +TE L + F + GVIT V I P + + GF+ FE
Sbjct 369 DQRANRTLFLGNLDITVTESDLRRAFDRFGVITEVDIKRP----SRGQTSTYGFLKFENL 424
Query 134 PQAESAKNSLDGKSFYGMVIRIGWGKA 160
+ AK ++ GK I+IG+GKA
Sbjct 425 DMSHRAKLAMSGKIIIRNPIKIGYGKA 451
> ath:AT4G13860 glycine-rich RNA-binding protein, putative
Length=87
Score = 53.5 bits (127), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query 78 STNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFETRPQAE 137
+T +Y+GNLSP T++ L + F +G + +M R + R+R GFV++ + +AE
Sbjct 2 ATRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTD---RSRGFGFVTYSSHSEAE 58
Query 138 SAKNSLDGKSFYGMVIRI 155
+A + +DGK G + +
Sbjct 59 AAVSGMDGKELNGRRVSV 76
> mmu:229700 Rbm15, C230088J01Rik, KIAA1438, mKIAA1438; RNA binding
motif protein 15; K13190 RNA-binding protein 15
Length=962
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query 74 EKESSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFETR 133
++ ++ L+LGNL +TE L + F + GVIT V I P + + GF+ FE
Sbjct 368 DQRANRTLFLGNLDITVTENDLRRAFDRFGVITEVDIKRP----SRGQTSTYGFLKFENL 423
Query 134 PQAESAKNSLDGKSFYGMVIRIGWGKA 160
+ AK ++ GK I+IG+GKA
Sbjct 424 DMSHRAKLAMSGKIIIRNPIKIGYGKA 450
> ath:AT1G49760 PAB8; PAB8 (POLY(A) BINDING PROTEIN 8); RNA binding
/ translation initiation factor; K13126 polyadenylate-binding
protein
Length=671
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query 74 EKESSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFETR 133
EK TN+Y+ NLS +++E L + FG+ GV TS IM + + +++ GFV+FE
Sbjct 219 EKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIM----RDGEGKSKGFGFVNFENS 274
Query 134 PQAESAKNSLDGKSF 148
A A ++L+GK+F
Sbjct 275 DDAARAVDALNGKTF 289
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query 74 EKESSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFETR 133
+K +NLY+ NL +T++ L + F G ITS K+M + +R GFV+F T
Sbjct 322 DKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVM----RDPSGVSRGSGFVAFSTP 377
Query 134 PQAESAKNSLDGK 146
+A A ++GK
Sbjct 378 EEATRAITEMNGK 390
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query 75 KESSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFETRP 134
++ +T+LY+G+L +T+ L + F + G + SV++ T RR+ G+V++ T
Sbjct 41 QQGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMT---TRRSLGYGYVNYATPQ 97
Query 135 QAESAKNSLDGKSFYGMVIRIGW 157
A A N L+ + G IR+ +
Sbjct 98 DASRALNELNFMALNGRAIRVMY 120
Score = 35.4 bits (80), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query 73 LEKESSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFET 132
L K N+++ NL I + L + F G I S K+ + +++ GFV ++T
Sbjct 127 LRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAV----DPSGQSKGYGFVQYDT 182
Query 133 RPQAESAKNSLDGKSFYGMVIRIG 156
A+ A + L+G + +G
Sbjct 183 DEAAQGAIDKLNGMLLNDKQVYVG 206
> ath:AT5G61030 GR-RBP3 (glycine-rich RNA-binding protein 3);
ATP binding / RNA binding
Length=309
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query 77 SSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFETRPQA 136
SS+ L++G ++ + E+ L + F K+G + +++ R E R+R GFV+F + A
Sbjct 38 SSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDR---ETGRSRGFGFVTFTSSEAA 94
Query 137 ESAKNSLDGKSFYGMVIRIGW 157
SA +LDG+ +G V+++ +
Sbjct 95 SSAIQALDGRDLHGRVVKVNY 115
> hsa:26986 PABPC1, PAB1, PABP, PABP1, PABPC2, PABPL1; poly(A)
binding protein, cytoplasmic 1; K13126 polyadenylate-binding
protein
Length=636
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query 79 TNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFETRPQAES 138
TN+Y+ N ++ +E L FGK G SVK+M +E +++ GFVSFE A+
Sbjct 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query 139 AKNSLDGKSFYGMVIRIG 156
A + ++GK G I +G
Sbjct 247 AVDEMNGKELNGKQIYVG 264
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query 80 NLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFETRPQAESA 139
+LY+G+L P++TE L ++F G I S+++ + RR+ +V+F+ AE A
Sbjct 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVC---RDMITRRSLGYAYVNFQQPADAERA 68
Query 140 KNSLDGKSFYGMVIRIGWGK 159
++++ G +RI W +
Sbjct 69 LDTMNFDVIKGKPVRIMWSQ 88
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query 79 TNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFETRPQAES 138
NLY+ NL I +E L ++F G ITS K+M E R++ GFV F + +A
Sbjct 294 VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-----EGGRSKGFGFVCFSSPEEATK 348
Query 139 AKNSLDGK 146
A ++G+
Sbjct 349 AVTEMNGR 356
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query 73 LEKESSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFET 132
L K N+++ NL I + L F G I S K++ ++ ++ GFV FET
Sbjct 93 LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC-----DENGSKGYGFVHFET 147
Query 133 RPQAESAKNSLDGKSFYGMVIRIGWGKA 160
+ AE A ++G + +G K+
Sbjct 148 QEAAERAIEKMNGMLLNDRKVFVGRFKS 175
> mmu:18459 Pabpc2, PABP, PABP+, Pabp2; poly(A) binding protein,
cytoplasmic 2; K13126 polyadenylate-binding protein
Length=628
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query 79 TNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFETRPQAES 138
TN+Y+ N + +E L FG+ G I SVK+M +E +++ GFVSFE A+
Sbjct 191 TNVYIKNFGDRMDDETLNGLFGRFGQILSVKVM----TDEGGKSKGFGFVSFERHEDAQK 246
Query 139 AKNSLDGKSFYGMVIRIG 156
A + ++GK G I +G
Sbjct 247 AVDEMNGKELNGKHIYVG 264
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query 80 NLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFETRPQAESA 139
+LY+G+L P++TE L ++F G I S+++ + RR+ V+FE AE A
Sbjct 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVY---RDVITRRSLGYASVNFEQPADAERA 68
Query 140 KNSLDGKSFYGMVIRIGWGK 159
++++ G +RI W +
Sbjct 69 LDTMNFDVIKGKPVRIMWSQ 88
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query 80 NLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFETRPQAESA 139
NLY+ NL I +E L ++F G ITS K+M E R++ GFV F + +A A
Sbjct 295 NLYVKNLDDGIDDERLQKEFSPFGTITSTKVM-----TEGGRSKGFGFVCFSSPEEATKA 349
Query 140 KNSLDGK 146
+ ++G+
Sbjct 350 VSEMNGR 356
Score = 35.8 bits (81), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query 73 LEKESSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFET 132
L + N+++ NL+ I + L F G I S K++ ++ ++ GFV FET
Sbjct 93 LRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVV-----SDENGSKGHGFVHFET 147
Query 133 RPQAESAKNSLDGKSFYGMVIRIGWGKA 160
AE A ++G + +G K+
Sbjct 148 EEAAERAIEKMNGMLLNDRKVFVGRFKS 175
> dre:798517 rbm15, im:7139999; RNA binding motif protein 15;
K13190 RNA-binding protein 15
Length=853
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query 74 EKESSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFETR 133
++ ++ L+LGNL +TE L + F + G IT V I P + ++ GF+ FE
Sbjct 299 DQRANRTLFLGNLDITVTENDLRRAFERFGTITEVDIKRP----TRGQSSTYGFLKFENL 354
Query 134 PQAESAKNSLDGKSFYGMVIRIGWGKA 160
A AK S+ GK I+IG+GKA
Sbjct 355 DMAHRAKISMSGKVVGRNPIKIGYGKA 381
> xla:379761 cirbp-a, MGC52663, XCIRP, XCIRP-1, cirbp, cirp, cirp-1;
cold inducible RNA binding protein
Length=166
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query 81 LYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFETRPQAESAK 140
L++G L+ E E+ L Q F K+G I+ V ++ R E +R+R GFV+FE A+ A
Sbjct 7 LFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDR---ETKRSRGFGFVTFENVDDAKDAM 63
Query 141 NSLDGKSFYGMVIRI 155
+++GKS G IR+
Sbjct 64 MAMNGKSVDGRQIRV 78
> mmu:19656 Rbmxrt, Hnrpg, MGC102184, Rbmx, Rbmxl1; RNA binding
motif protein, X chromosome retrogene; K12885 heterogeneous
nuclear ribonucleoprotein G
Length=388
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query 73 LEKESSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFET 132
+E + L++G L+ E E+ L FGK+G I + +M + E ++R FV+FE+
Sbjct 2 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLM---KDRETNKSRGFAFVTFES 58
Query 133 RPQAESAKNSLDGKSFYGMVIRIGWGKALRPAF 165
A+ A ++GKS G I++ +A +P+F
Sbjct 59 PADAKDAARDMNGKSLDGKAIKV--EQATKPSF 89
> ath:AT5G54900 ATRBP45A (RNA-binding protein 45A); RNA binding
Length=387
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 68/157 (43%), Gaps = 19/157 (12%)
Query 48 ERCALRFQIAALENATRPRGAPPIDLEKESSTNLYLGNLSPEITEEFLCQQFGKHGVITS 107
+ AL Q A +N +GA D + ++T +++G L +T++ L FG+ G +
Sbjct 233 NKNALPMQPAMYQNT---QGANAGDNDPNNTT-IFVGGLDANVTDDELKSIFGQFGELLH 288
Query 108 VKIMYPRTEEEKRRNRNCGFVSFETRPQAESAKNSLDGKSFYGMVIRIGWGKALRPAFGA 167
VKI + CGFV + + AE A + L+G G IR+ WG++
Sbjct 289 VKI---------PPGKRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWGRSPNKQSDQ 339
Query 168 TPTGLSGGFSDSPFPSSGFSPPPPSAFSAEVPTATPT 204
G + P P G+ ++A+ PT P
Sbjct 340 AQWNGGGYYGYPPQPQGGY------GYAAQPPTQDPN 370
Score = 36.6 bits (83), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query 81 LYLGNLSPEITEEFLCQQFGK-HGVITSVKIMYPRTEEEKRRNRNCGFVSFETRPQAESA 139
+++G+L+PE+T+ L F +G + K++ RT R++ GFV F + A
Sbjct 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRT---TGRSKGYGFVRFADENEQMRA 212
Query 140 KNSLDGKSFYGMVIRIG 156
++G+ +RIG
Sbjct 213 MTEMNGQYCSTRPMRIG 229
> mmu:76572 Rbmxl2, 1700012H05Rik, HNRNPG-T; RNA binding motif
protein, X-linked-like 2
Length=385
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query 73 LEKESSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFET 132
+E + L++G L+ E E+ L FGK+G I V +M + E ++R FV+FE
Sbjct 2 VEADRPGKLFIGGLNLETDEKGLETAFGKYGRIIEVLLM---KDRETSKSRGFAFVTFEN 58
Query 133 RPQAESAKNSLDGKSFYGMVIRIGWGKALRPAF 165
A++A ++GKS G I++ +A +P F
Sbjct 59 PADAKAAARDMNGKSLDGKAIKV--AQATKPVF 89
> mmu:12696 Cirbp, Cirp, R74941; cold inducible RNA binding protein;
K13195 cold-inducible RNA-binding protein
Length=172
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query 81 LYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFETRPQAESAK 140
L++G LS + E+ L Q F K+G I+ V ++ R E +R+R GFV+FE A+ A
Sbjct 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDR---ETQRSRGFGFVTFENIDDAKDAM 64
Query 141 NSLDGKSFYGMVIRI 155
+++GKS G IR+
Sbjct 65 MAMNGKSVDGRQIRV 79
> hsa:1153 CIRBP, CIRP; cold inducible RNA binding protein; K13195
cold-inducible RNA-binding protein
Length=172
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query 81 LYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFETRPQAESAK 140
L++G LS + E+ L Q F K+G I+ V ++ R E +R+R GFV+FE A+ A
Sbjct 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDR---ETQRSRGFGFVTFENIDDAKDAM 64
Query 141 NSLDGKSFYGMVIRI 155
+++GKS G IR+
Sbjct 65 MAMNGKSVDGRQIRV 79
> xla:379896 pabpc1-a, MGC53109, pab1, pabp, pabp1, pabpc1, pabpc2;
poly(A) binding protein, cytoplasmic 1; K13126 polyadenylate-binding
protein
Length=633
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query 79 TNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFETRPQAES 138
TN+Y+ N ++ +E L + FGK+G SVK+M ++ +++ GFVSFE A+
Sbjct 191 TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVM----TDDNGKSKGFGFVSFERHEDAQK 246
Query 139 AKNSLDGKSFYGMVIRIG 156
A + + GK G + +G
Sbjct 247 AVDEMYGKDMNGKSMFVG 264
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 74/186 (39%), Gaps = 36/186 (19%)
Query 19 FLEEIKKRQELQGQKRRLYERLNLSRTEEERCALRFQIAALENATRPRGAPPIDLEKESS 78
F+ +K+ E Q + +R +E++N R TR +G
Sbjct 262 FVGRAQKKVERQTELKRKFEQMNQDRI-----------------TRYQG----------- 293
Query 79 TNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFETRPQAES 138
NLY+ NL I +E L ++F G ITS K+M E R++ GFV F + +A
Sbjct 294 VNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMM-----EGGRSKGFGFVCFSSPEEATK 348
Query 139 AKNSLDGKSFYG--MVIRIGWGKALRPAFGATPTGLSGGFSDSPFPSSG-FSPPPPSAFS 195
A ++G+ + + + K R A P P + PPP S F
Sbjct 349 AVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRVPNPVINPYQPPPSSYFM 408
Query 196 AEVPTA 201
A +P A
Sbjct 409 AAIPPA 414
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query 80 NLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFETRPQAESA 139
+LY+G+L ++TE L ++F G I S+++ + RR+ +V+F+ AE A
Sbjct 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVC---RDMITRRSLGYAYVNFQQPADAERA 68
Query 140 KNSLDGKSFYGMVIRIGWGK 159
++++ G +RI W +
Sbjct 69 LDTMNFDVIKGRPVRIMWSQ 88
Score = 38.5 bits (88), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query 73 LEKESSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFET 132
L K N+++ NL I + L F G I S K++ ++ ++ GFV FET
Sbjct 93 LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC-----DENGSKGYGFVHFET 147
Query 133 RPQAESAKNSLDGKSFYGMVIRIGWGKA 160
+ AE A + ++G + +G K+
Sbjct 148 QEAAERAIDKMNGMLLNDRKVFVGRFKS 175
> ath:AT5G19960 RNA recognition motif (RRM)-containing protein
Length=337
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query 76 ESSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFETRPQ 135
+ ++Y+G L +ITEE + + F +G + +VKI+ R+ R + GFV+F R
Sbjct 4 DDGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSV----RGKCYGFVTFSNRRS 59
Query 136 AESAKNSLDGKSFYGMVIRI 155
A+ A +DGKS G +R+
Sbjct 60 ADDAIEDMDGKSIGGRAVRV 79
> ath:AT3G19130 ATRBP47B (RNA-binding protein 47B); RNA binding
Length=435
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 12/103 (11%)
Query 78 STN--LYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFETRPQ 135
STN +++G + P++ +E L Q F + G + SVKI + CGFV F R
Sbjct 318 STNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPV---------GKGCGFVQFADRKS 368
Query 136 AESAKNSLDGKSFYGMVIRIGWGKALRPAF-GATPTGLSGGFS 177
AE A SL+G +R+ WG++ + G + +GG+S
Sbjct 369 AEDAIESLNGTVIGKNTVRLSWGRSPNKQWRGDSGQQWNGGYS 411
Score = 31.2 bits (69), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query 73 LEKESSTNLYLGNLSPEITEEFLCQQFG-KHGVITSVKIMYPRTEEEKRRNRNCGFVSFE 131
+E ++++G+LSP++T+ L + F ++ + S K++ + R++ GFV F
Sbjct 196 VENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVV---IDSNTGRSKGYGFVRFG 252
Query 132 TRPQAESAKNSLDGKSFYGMVIRIG 156
+ A ++G +R+G
Sbjct 253 DENERSRALTEMNGAYCSNRQMRVG 277
> dre:393856 pabpc1b, MGC77608, pabpc1, zgc:77608; poly A binding
protein, cytoplasmic 1 b; K13126 polyadenylate-binding protein
Length=634
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query 79 TNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFETRPQAES 138
TN+Y+ N ++ ++ L F K+G S+++M +E ++R GFVSFE A+
Sbjct 191 TNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVM----TDENGKSRGFGFVSFERHEDAQR 246
Query 139 AKNSLDGKSFYGMVIRIG 156
A + ++GK G +I +G
Sbjct 247 AVDEMNGKEMNGKLIYVG 264
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query 80 NLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFETRPQAESA 139
+LY+G+L ++TE L ++F G I S+++ + RR+ +V+F+ AE A
Sbjct 12 SLYVGDLHQDVTEAMLYEKFSPAGAILSIRVC---RDMITRRSLGYAYVNFQQPADAERA 68
Query 140 KNSLDGKSFYGMVIRIGWGK 159
++++ G +RI W +
Sbjct 69 LDTMNFDVIKGRPVRIMWSQ 88
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query 73 LEKESSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFET 132
+ + NLY+ NL I +E L ++F G ITS K+M + R++ GFV F +
Sbjct 288 MTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-----DGGRSKGFGFVCFSS 342
Query 133 RPQAESAKNSLDGK 146
+A A ++G+
Sbjct 343 PEEATKAVTEMNGR 356
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query 73 LEKESSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFET 132
L K N+++ NL I + L F G I S K++ ++ ++ GFV FET
Sbjct 93 LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC-----DENGSKGYGFVHFET 147
Query 133 RPQAESAKNSLDGKSFYGMVIRIGWGKA 160
+ AE A ++G + +G K+
Sbjct 148 QEAAERAIEKMNGMLLNDRKVFVGRFKS 175
> hsa:494115 RBMXL1, DKFZp547N1117, DKFZp667D0223, FLJ32614, RBM1;
RNA binding motif protein, X-linked-like 1; K12885 heterogeneous
nuclear ribonucleoprotein G
Length=390
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query 73 LEKESSTNLYLGNLSPEITEEFLCQQFGKHGVITSVKIMYPRTEEEKRRNRNCGFVSFET 132
+E + L++G L+ E E+ L FGK+G I V ++ + E ++R FV+FE+
Sbjct 2 VEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLI---KDRETNKSRGFAFVTFES 58
Query 133 RPQAESAKNSLDGKSFYGMVIRIGWGKALRPAF 165
A+ A ++GKS G I++ +A +P+F
Sbjct 59 PADAKDAARDMNGKSLDGKAIKV--EQATKPSF 89
Lambda K H
0.316 0.133 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 22613356868
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
Posted date: Sep 17, 2011 2:57 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40