bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
164,496 sequences; 82,071,388 total letters
Query= Eten_2099_orf2
Length=265
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_036910 U2 snRNP auxiliary factor small subunit, put... 416 5e-116
bbo:BBOV_IV007810 23.m06352; U2 splicing factor subunit; K1283... 387 3e-107
pfa:PF11_0200 U2 snRNP auxiliary factor, small subunit, putati... 363 4e-100
tpv:TP03_0294 U2 small nuclear ribonucleoprotein, auxiliary fa... 362 8e-100
cpv:cgd8_5240 U2AG splicing factor U2AF U2snRNP auxilliary fac... 343 4e-94
ath:AT5G42820 U2AF35B; RNA binding / nucleic acid binding / nu... 248 1e-65
dre:192328 u2af1, CHUNP6860, MGC111896, zgc:111896; U2(RNU2) s... 225 1e-58
mmu:108121 U2af1, 2010107D16Rik, 35kDa; U2 small nuclear ribon... 223 5e-58
hsa:7307 U2AF1, DKFZp313J1712, FP793, RN, RNU2AF1, U2AF35, U2A... 223 5e-58
xla:734926 u2af1, MGC131026; U2 small nuclear RNA auxiliary fa... 221 2e-57
mmu:233073 U2af1l4, AA407033, AF419339, AI451269, AW553050, U2... 220 4e-57
cel:Y116A8C.35 uaf-2; U2AF splicing factor family member (uaf-... 204 3e-52
hsa:100509022 splicing factor U2AF 35 kDa subunit-like 192 7e-49
hsa:199746 U2AF1L4, FLJ35525, MGC33901, U2AF1-RS3, U2AF1L3, U2... 172 1e-42
ath:AT1G27650 ATU2AF35A; RNA binding / nucleic acid binding / ... 154 3e-37
hsa:8233 ZRSR2, MGC142014, MGC142040, U2AF1-RS2, U2AF1L2, U2AF... 137 4e-32
ath:AT1G10320 U2 snRNP auxiliary factor-related 136 9e-32
mmu:22184 Zrsr2, 35kDa, 5031411E02Rik, A230052C13Rik, C77286, ... 132 1e-30
dre:100005490 zrsr2, fb73a09, wu:fb73a09; zinc finger (CCCH ty... 127 5e-29
mmu:22183 Zrsr1, D11Ncvs75, Irlgs2, SP2, U2af1-rs1, U2afbp-rs;... 124 5e-28
ath:AT3G44785 U2AF splicing factor subunit, putative / U2 auxi... 79.7 1e-14
tgo:TGME49_112530 splicing factor protein, putative ; K13091 R... 53.1 1e-06
tpv:TP03_0691 splicing factor; K13091 RNA-binding protein 39 48.5
pfa:MAL13P1.120 splicing factor, putative; K13091 RNA-binding ... 47.0 7e-05
mmu:16589 Uhmk1, 4732477C12Rik, 4930500M09Rik, AA673513, AI449... 46.2 1e-04
cel:Y47G6A.20 rnp-6; RNP (RRM RNA binding domain) containing f... 46.2 1e-04
xla:444779 MGC81970 protein 44.7 4e-04
cpv:cgd7_5220 splicing factor with 3 RRM domains ; K13091 RNA-... 43.9 6e-04
xla:446785 rbm39, MGC80448, rnpc2; RNA binding motif protein 3... 43.9 6e-04
dre:406251 rbm39a, rnpc2, zgc:55780; RNA binding motif protein... 43.1 0.001
dre:541556 rbm39b, rnpc2l, wu:fa97g07, wu:fb09c08, zgc:112139,... 42.4 0.002
ath:AT1G30480 DRT111; DRT111; nucleic acid binding / nucleotid... 41.6 0.003
pfa:MAL13P1.35 U1 small nuclear ribonucleoprotein A, putative 41.6 0.003
cel:Y55F3AM.3 hypothetical protein; K13091 RNA-binding protein 39 41.6
hsa:9584 RBM39, CAPER, CAPERalpha, CC1.3, DKFZp781C0423, FLJ44... 40.8 0.005
dre:767721 uhmk1, MGC153241, zgc:153241; U2AF homology motif (... 40.8 0.006
mmu:170791 Rbm39, 1500012C14Rik, 2310040E03Rik, B330012G18Rik,... 40.4 0.006
dre:415211 puf60b, SIAHBP1, fe37c05, repressor, si:ch211-12p8.... 40.4 0.007
pfa:PF14_0513 RNA binding protein, putative; K12840 splicing f... 39.3 0.013
tgo:TGME49_034520 U2 snRNP auxiliary factor or splicing factor... 39.3 0.016
sce:YGR159C NSR1, SHE5; Nsr1p; K11294 nucleolin 38.9 0.018
ath:AT2G16940 RNA recognition motif (RRM)-containing protein 38.9 0.022
ath:AT5G16260 RNA recognition motif (RRM)-containing protein; ... 38.5 0.024
bbo:BBOV_II004960 18.m06413; RNA recognition motif (RRM)-conta... 38.5 0.025
ath:AT1G60900 U2 snRNP auxiliary factor large subunit, putativ... 38.1 0.035
ath:AT1G60830 U2 snRNP auxiliary factor large subunit, putative 38.1 0.035
cel:F58B3.7 hypothetical protein; K12840 splicing factor 45 38.1
hsa:127933 UHMK1, DKFZp434C1613, FLJ23015, KIS, KIST; U2AF hom... 37.7 0.049
cel:Y92C3B.2 uaf-1; U2AF splicing factor family member (uaf-1)... 37.4 0.053
ath:AT1G04990 zinc finger (CCCH-type) family protein 37.0 0.074
> tgo:TGME49_036910 U2 snRNP auxiliary factor small subunit, putative
; K12836 splicing factor U2AF 35 kDa subunit
Length=254
Score = 416 bits (1069), Expect = 5e-116, Method: Compositional matrix adjust.
Identities = 204/254 (80%), Positives = 223/254 (87%), Gaps = 2/254 (0%)
Query 14 MAEHLARIIGTEEDRVNCPFYWKIGACRHGDQCSRSHYKPSSSPTIVLRHMYPNPPVAIA 73
MAEHLARIIGTEEDRVNCPFYWKIGACRHGDQCSRSHYKP+SSPTIVLRHMYPNPPVA+A
Sbjct 1 MAEHLARIIGTEEDRVNCPFYWKIGACRHGDQCSRSHYKPTSSPTIVLRHMYPNPPVAVA 60
Query 74 IAEGQNVSDELLDEAADHFEAFFSEVFEELYKYGEVEDMVVCDNIGDHIIGNVYVKYSDD 133
IAEGQNVSDELLD+AADHFEAFFSEVFEEL KYGEVEDMVVCDNIGDHIIGNVYVKY+D+
Sbjct 61 IAEGQNVSDELLDQAADHFEAFFSEVFEELAKYGEVEDMVVCDNIGDHIIGNVYVKYTDE 120
Query 134 DAAKKALSALQGRYYAGKPIQAEFTPVTDFREARCRQFVDGQCRRGGYCNFMHLKHVPRS 193
+AA KAL+ALQGR+Y+GK I AEFTPVTDFREARCRQFVDGQCRRGGYCNFMHLKHVPRS
Sbjct 121 EAANKALAALQGRFYSGKQIHAEFTPVTDFREARCRQFVDGQCRRGGYCNFMHLKHVPRS 180
Query 194 LKRKLFNKMYEEHPEYRQRVRGGRRSRSRSGSPHKHRRSPSLHRP--ERPERRTSEERRA 251
LKRKLF KM+++HP+Y ++ GRR RR P +RPERRTSEERRA
Sbjct 181 LKRKLFKKMFDDHPDYGRQRSPGRRRSRSRQRSSSPRRPTRRRSPSIQRPERRTSEERRA 240
Query 252 MIAQWNQERDAAQS 265
MIA+WN+ER+ A
Sbjct 241 MIAKWNEEREEANG 254
> bbo:BBOV_IV007810 23.m06352; U2 splicing factor subunit; K12836
splicing factor U2AF 35 kDa subunit
Length=251
Score = 387 bits (993), Expect = 3e-107, Method: Compositional matrix adjust.
Identities = 181/252 (71%), Positives = 211/252 (83%), Gaps = 3/252 (1%)
Query 14 MAEHLARIIGTEEDRVNCPFYWKIGACRHGDQCSRSHYKPSSSPTIVLRHMYPNPPVAIA 73
MAE+LARIIGTEEDRVNCPFYWKIGACRHGDQCSR+HYKPS++ T+V+RHMY NPPVAIA
Sbjct 1 MAENLARIIGTEEDRVNCPFYWKIGACRHGDQCSRAHYKPSAAQTLVIRHMYQNPPVAIA 60
Query 74 IAEGQNVSDELLDEAADHFEAFFSEVFEELYKYGEVEDMVVCDNIGDHIIGNVYVKYSDD 133
IAEGQ +SDELLD+AADHFE F+ EVF EL KYGE+EDMVVCDNIGDHIIGNVYVKY D+
Sbjct 61 IAEGQMISDELLDKAADHFEEFYEEVFLELMKYGEIEDMVVCDNIGDHIIGNVYVKYRDE 120
Query 134 DAAKKALSALQGRYYAGKPIQAEFTPVTDFREARCRQFVDGQCRRGGYCNFMHLKHVPRS 193
++A A+S L GR+Y GKPIQ E+TPVTDFREARCRQFV+GQCRRGGYCNFMH+KHVPRS
Sbjct 121 NSAAHAISMLSGRFYGGKPIQCEYTPVTDFREARCRQFVEGQCRRGGYCNFMHIKHVPRS 180
Query 194 LKRKLFNKMYEEHPEYRQRVRGGRRSRSRSGSPHKHRRSPSLHRPERPERRTSEERRAMI 253
++RKL +MY E PEY++R RS RSG + H ERP+R+TS+ERR MI
Sbjct 181 VRRKLDERMYAEFPEYKKR---ALRSSERSGRYVDSEALITFHSYERPKRQTSQERRNMI 237
Query 254 AQWNQERDAAQS 265
WN+ERDA ++
Sbjct 238 EMWNRERDAREN 249
> pfa:PF11_0200 U2 snRNP auxiliary factor, small subunit, putative;
K12836 splicing factor U2AF 35 kDa subunit
Length=294
Score = 363 bits (931), Expect = 4e-100, Method: Compositional matrix adjust.
Identities = 173/276 (62%), Positives = 210/276 (76%), Gaps = 28/276 (10%)
Query 14 MAEHLARIIGTEEDRVNCPFYWKIGACRHGDQCSRSHYKPSSSPTIVLRHMYPNPPVAIA 73
MAEHLARIIGTEEDRVNCPF+WKIGACRHGDQCSRSHYKP+ + T+V+RHMY NPP+A+A
Sbjct 1 MAEHLARIIGTEEDRVNCPFFWKIGACRHGDQCSRSHYKPNCAQTLVIRHMYDNPPIAVA 60
Query 74 IAEGQNVSDELLDEAADHFEAFFSEVFEELYKYGEVEDMVVCDNIGDHIIGNVYVKYSDD 133
IAEGQ V DE+LD+AADHFE F+ EVF+EL KYGE+EDMVVCDNIGDHIIGNVY+KY+ +
Sbjct 61 IAEGQMVEDEVLDKAADHFEEFYEEVFDELMKYGEIEDMVVCDNIGDHIIGNVYIKYTHE 120
Query 134 DAAKKALSALQGRYYAGKPIQAEFTPVTDFREARCRQFVDGQCRRGGYCNFMHLKHVPRS 193
D A+KA++ L GR+YAGKP+Q E+TPVTDFREARCRQFV+GQCRRGGYCNFMH+KHVPR+
Sbjct 121 DYAEKAVNELNGRFYAGKPLQIEYTPVTDFREARCRQFVEGQCRRGGYCNFMHIKHVPRT 180
Query 194 LKRKLFNKMYEEHPEYRQRV-------RGGRRSRSRSGSP--HKHRRSPSLHRPERPE-- 242
+KRKLF +MY+++PEY++R GRR R G + RRS + +R
Sbjct 181 VKRKLFRRMYKKYPEYKKRRARKDDSDDDGRRESYREGKDKYKRDRRSSHHYSSKRKNRS 240
Query 243 -----------------RRTSEERRAMIAQWNQERD 261
R S ERR I +WN+ER+
Sbjct 241 DNEDDDDDEERSYKHARRENSAERREKIERWNKERE 276
> tpv:TP03_0294 U2 small nuclear ribonucleoprotein, auxiliary
factor, small subunit; K12836 splicing factor U2AF 35 kDa subunit
Length=235
Score = 362 bits (929), Expect = 8e-100, Method: Compositional matrix adjust.
Identities = 179/249 (71%), Positives = 210/249 (84%), Gaps = 17/249 (6%)
Query 14 MAEHLARIIGTEEDRVNCPFYWKIGACRHGDQCSRSHYKPSSSPTIVLRHMYPNPPVAIA 73
MAEHLARIIGTEEDRVNCPF+WKIGACRHGDQCSR+HYKPS++ T+V+RHMY NPPVAIA
Sbjct 1 MAEHLARIIGTEEDRVNCPFFWKIGACRHGDQCSRTHYKPSAAQTLVIRHMYQNPPVAIA 60
Query 74 IAEGQNVSDELLDEAADHFEAFFSEVFEELYKYGEVEDMVVCDNIGDHIIGNVYVKYSDD 133
IAEGQ +SDELLD+AADHFE FF EVF EL KYGE+EDM+VCDNIGDHIIGNVY+KYSD+
Sbjct 61 IAEGQMISDELLDKAADHFEEFFEEVFLELMKYGEIEDMIVCDNIGDHIIGNVYIKYSDE 120
Query 134 DAAKKALSALQGRYYAGKPIQAEFTPVTDFREARCRQFVDGQCRRGGYCNFMHLKHVPRS 193
AA +A+++L GRYY G+PIQ E+TPVTDFREARCRQFV+GQCRRGGYCNFMH+KHVPRS
Sbjct 121 AAACRAVTSLSGRYYGGRPIQCEYTPVTDFREARCRQFVEGQCRRGGYCNFMHIKHVPRS 180
Query 194 LKRKLFNKMYEEHPEYRQRVRGGRRSRSRSGSPHKHRRSPSLHRPERPERRTSEERRAMI 253
L+RKL +MY+E PEY++R R RS SP+ R +R+TSEERR MI
Sbjct 181 LRRKLMTRMYQEFPEYKKRT-----PRHRSASPY------------RRKRQTSEERRDMI 223
Query 254 AQWNQERDA 262
QWN+ER++
Sbjct 224 EQWNRERES 232
> cpv:cgd8_5240 U2AG splicing factor U2AF U2snRNP auxilliary factor
small subunit CCCh+RRM+CCCh-like ; K12836 splicing factor
U2AF 35 kDa subunit
Length=256
Score = 343 bits (879), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 152/253 (60%), Positives = 198/253 (78%), Gaps = 4/253 (1%)
Query 9 NQTFTMAEHLARIIGTEEDRVNCPFYWKIGACRHGDQCSRSHYKPSSSPTIVLRHMYPNP 68
NQ MAEHLARI+GTEEDRVNCPFYWKIGACRHGDQCSR+HYKP+SSPT+++RH+Y N
Sbjct 3 NQNGQMAEHLARILGTEEDRVNCPFYWKIGACRHGDQCSRNHYKPTSSPTVIIRHIYENS 62
Query 69 PVAIAIAEGQNVSDELLDEAADHFEAFFSEVFEELYKYGEVEDMVVCDNIGDHIIGNVYV 128
PVA+AIAEGQ VSD+L DE +D E F+ E+F+EL KYGE+ ++++CDNIGDH+IGNVY+
Sbjct 63 PVALAIAEGQEVSDKLADEESDKVEVFYEEMFKELSKYGEILELLICDNIGDHMIGNVYI 122
Query 129 KYSDDDAAKKALSALQGRYYAGKPIQAEFTPVTDFREARCRQFVDGQCRRGGYCNFMHLK 188
++S ++ AK AL+ L+G+ YAGKPI E +PV+DF+EARCRQ++DG C RGGYCNFMH+K
Sbjct 123 RFSTEEYAKTALANLRGKMYAGKPINIELSPVSDFKEARCRQYIDGCCNRGGYCNFMHIK 182
Query 189 HVPRSLKRKLFNKMYEEHPEYRQRVRGGRRSRSRSGSPHKHRRSPSLHRPERPERRTSEE 248
HVPR +K K+F++MY EHPEY R + + S + RP + +R++SEE
Sbjct 183 HVPRCVKDKIFDQMYSEHPEYLHR----KTNSCGKSSARDDGKGSESSRPRKFQRQSSEE 238
Query 249 RRAMIAQWNQERD 261
RR MI WN+ R+
Sbjct 239 RRLMIESWNKRRE 251
> ath:AT5G42820 U2AF35B; RNA binding / nucleic acid binding /
nucleotide binding / zinc ion binding; K12836 splicing factor
U2AF 35 kDa subunit
Length=283
Score = 248 bits (634), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 140/287 (48%), Positives = 177/287 (61%), Gaps = 42/287 (14%)
Query 14 MAEHLARIIGTEEDRVNCPFYWKIGACRHGDQCSRSHYKPSSSPTIVLRHMYPNPPVAIA 73
MAEHLA I GTE+DRVNCPFY+KIGACRHGD+CSR H +P+ SPT++L +MY P +
Sbjct 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDM--- 57
Query 74 IAEGQNVSDELLD--EAADHFEAFFSEVFEELYKYGEVEDMVVCDNIGDHIIGNVYVKYS 131
I G + + LD + DHFE F+ ++FEEL K+GEVE + VCDN+ DH+IGNVYV +
Sbjct 58 ITPGVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFK 117
Query 132 DDDAAKKALSALQGRYYAGKPIQAEFTPVTDFREARCRQFVDGQCRRGGYCNFMHLKHVP 191
++D A AL ALQGR+Y+G+PI A+F+PVTDFREA CRQ+ + C RGGYCNFMH+K +
Sbjct 118 EEDHAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQIS 177
Query 192 RSLKRKLFNKMYE-------------------EHPEYRQRVRGGRRSRSRSGSPHK---- 228
R L+RKLF + EH R+R RG R R R G+ +
Sbjct 178 RELRRKLFGRYRRSYRRGSRSRSRSISPRRKREHS--RERERGDVRDRDRHGNGKRSSDR 235
Query 229 ------------HRRSPSLHRPERPERRTSEERRAMIAQWNQERDAA 263
SP R R R SEERRA I QWN+ERD
Sbjct 236 SERHDRDGGGRRRHGSPKRSRSPRNVREGSEERRARIEQWNRERDEG 282
> dre:192328 u2af1, CHUNP6860, MGC111896, zgc:111896; U2(RNU2)
small nuclear RNA auxiliary factor 1; K12836 splicing factor
U2AF 35 kDa subunit
Length=249
Score = 225 bits (574), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 105/187 (56%), Positives = 140/187 (74%), Gaps = 3/187 (1%)
Query 14 MAEHLARIIGTEEDRVNCPFYWKIGACRHGDQCSRSHYKPSSSPTIVLRHMYPNPPVAIA 73
MAE+LA I GTE+D+VNC FY+KIGACRHGD+CSR H KP+ S TI L ++Y NP
Sbjct 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNTAQ 60
Query 74 IAEGQNVSDELLDEAADHFEAFFSEVFEELY-KYGEVEDMVVCDNIGDHIIGNVYVKYSD 132
A+G N ++ E +H++ FF EVF E+ KYGEVE+M VCDN+GDH++GNVYVK+
Sbjct 61 SADGLNAVSDV--EMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRR 118
Query 133 DDAAKKALSALQGRYYAGKPIQAEFTPVTDFREARCRQFVDGQCRRGGYCNFMHLKHVPR 192
++ A+KA+ L R++ G+PI AE +PVTDFREA CRQ+ G+C RGG+CNFMHLK + R
Sbjct 119 EEDAEKAVINLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISR 178
Query 193 SLKRKLF 199
L+R+L+
Sbjct 179 ELRRELY 185
> mmu:108121 U2af1, 2010107D16Rik, 35kDa; U2 small nuclear ribonucleoprotein
auxiliary factor (U2AF) 1; K12836 splicing factor
U2AF 35 kDa subunit
Length=239
Score = 223 bits (569), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 106/189 (56%), Positives = 144/189 (76%), Gaps = 6/189 (3%)
Query 14 MAEHLARIIGTEEDRVNCPFYWKIGACRHGDQCSRSHYKPSSSPTIVLRHMYPNPPVAIA 73
MAE+LA I GTE+D+VNC FY+KIGACRHGD+CSR H KP+ S TI+++++Y NP +
Sbjct 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTILIQNIYRNPQNSAQ 60
Query 74 IAEGQN--VSDELLDEAADHFEAFFSEVFEEL-YKYGEVEDMVVCDNIGDHIIGNVYVKY 130
A+G + VSD E +H++ FF EVF E+ KYGEVE+M VCDN+GDH++GNVYVK+
Sbjct 61 TADGSHCAVSDV---EMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKF 117
Query 131 SDDDAAKKALSALQGRYYAGKPIQAEFTPVTDFREARCRQFVDGQCRRGGYCNFMHLKHV 190
++ A+KA+ L R++ G+PI AE +PVTDFREA CRQ+ G+C RGG+CNFMHLK +
Sbjct 118 RREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPI 177
Query 191 PRSLKRKLF 199
R L+R+L+
Sbjct 178 SRELRRELY 186
> hsa:7307 U2AF1, DKFZp313J1712, FP793, RN, RNU2AF1, U2AF35, U2AFBP;
U2 small nuclear RNA auxiliary factor 1; K12836 splicing
factor U2AF 35 kDa subunit
Length=240
Score = 223 bits (569), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 106/189 (56%), Positives = 144/189 (76%), Gaps = 6/189 (3%)
Query 14 MAEHLARIIGTEEDRVNCPFYWKIGACRHGDQCSRSHYKPSSSPTIVLRHMYPNPPVAIA 73
MAE+LA I GTE+D+VNC FY+KIGACRHGD+CSR H KP+ S TI+++++Y NP +
Sbjct 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTILIQNIYRNPQNSAQ 60
Query 74 IAEGQN--VSDELLDEAADHFEAFFSEVFEEL-YKYGEVEDMVVCDNIGDHIIGNVYVKY 130
A+G + VSD E +H++ FF EVF E+ KYGEVE+M VCDN+GDH++GNVYVK+
Sbjct 61 TADGSHCAVSDV---EMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKF 117
Query 131 SDDDAAKKALSALQGRYYAGKPIQAEFTPVTDFREARCRQFVDGQCRRGGYCNFMHLKHV 190
++ A+KA+ L R++ G+PI AE +PVTDFREA CRQ+ G+C RGG+CNFMHLK +
Sbjct 118 RREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPI 177
Query 191 PRSLKRKLF 199
R L+R+L+
Sbjct 178 SRELRRELY 186
> xla:734926 u2af1, MGC131026; U2 small nuclear RNA auxiliary
factor 1; K12836 splicing factor U2AF 35 kDa subunit
Length=245
Score = 221 bits (562), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 106/189 (56%), Positives = 141/189 (74%), Gaps = 6/189 (3%)
Query 14 MAEHLARIIGTEEDRVNCPFYWKIGACRHGDQCSRSHYKPSSSPTIVLRHMYPNPPVAIA 73
MAE+LA I GTE+D+VNC FY+KIGACRHGD+CSR H KP+ S TI L ++Y NP +
Sbjct 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQ 60
Query 74 IAEGQN--VSDELLDEAADHFEAFFSEVFEEL-YKYGEVEDMVVCDNIGDHIIGNVYVKY 130
A+G VSD E +H++ FF EVF E+ KYGE+E+M VCDN+GDH++GNVYVK+
Sbjct 61 SADGLRCAVSDV---EMQEHYDEFFEEVFTEMEEKYGEIEEMNVCDNLGDHLVGNVYVKF 117
Query 131 SDDDAAKKALSALQGRYYAGKPIQAEFTPVTDFREARCRQFVDGQCRRGGYCNFMHLKHV 190
++ A+KA+ L R++ G+PI AE +PVTDFREA CRQ+ G+C RGG+CNFMHLK +
Sbjct 118 RREEDAEKAVKDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPI 177
Query 191 PRSLKRKLF 199
R L+R+L+
Sbjct 178 SRELRRELY 186
> mmu:233073 U2af1l4, AA407033, AF419339, AI451269, AW553050,
U2af26; U2 small nuclear RNA auxiliary factor 1-like 4
Length=220
Score = 220 bits (561), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 103/191 (53%), Positives = 144/191 (75%), Gaps = 6/191 (3%)
Query 14 MAEHLARIIGTEEDRVNCPFYWKIGACRHGDQCSRSHYKPSSSPTIVLRHMYPNPPVAIA 73
MAE+LA I GTE+D+VNC FY+KIGACRHGD+CSR H KP+ S TIVL ++Y NP
Sbjct 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQ 60
Query 74 IAEGQN--VSDELLDEAADHFEAFFSEVFEELY-KYGEVEDMVVCDNIGDHIIGNVYVKY 130
A+G + VSD E +H++ FF EVF EL KYGE+E+M VCDN+GDH++GNVYVK+
Sbjct 61 TADGSHCHVSDV---EVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKF 117
Query 131 SDDDAAKKALSALQGRYYAGKPIQAEFTPVTDFREARCRQFVDGQCRRGGYCNFMHLKHV 190
++ A++A++ L R++ G+ + AE +PVTDFRE+ CRQ+ G+C RGG+CNFMHL+ +
Sbjct 118 RREEDAERAVAELNNRWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPI 177
Query 191 PRSLKRKLFNK 201
R+L+R+L+ +
Sbjct 178 SRNLRRQLYGR 188
> cel:Y116A8C.35 uaf-2; U2AF splicing factor family member (uaf-2);
K12836 splicing factor U2AF 35 kDa subunit
Length=285
Score = 204 bits (519), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 94/188 (50%), Positives = 136/188 (72%), Gaps = 1/188 (0%)
Query 15 AEHLARIIGTEEDRVNCPFYWKIGACRHGDQCSRSHYKPSSSPTIVLRHMYPNPPVAIAI 74
AE+LA I GTE+D+VNC F++K GACRHGD+CSR+H+ P+ SPT+VL++ Y NP V +
Sbjct 10 AEYLASIYGTEKDKVNCSFFFKTGACRHGDKCSRAHHTPTFSPTVVLKNFYHNPVVDVRQ 69
Query 75 AEGQNVSDELLDEAADHFEAFFSEVFEELY-KYGEVEDMVVCDNIGDHIIGNVYVKYSDD 133
A+ + + D+ +F+ F+ EVF E+ KYGEVE++ VC+NIG+H++GNVYVK+ +
Sbjct 70 ADAFDKVGKRNDQEQRYFDDFYEEVFVEMERKYGEVEEINVCENIGEHMVGNVYVKFMKE 129
Query 134 DAAKKALSALQGRYYAGKPIQAEFTPVTDFREARCRQFVDGQCRRGGYCNFMHLKHVPRS 193
+ A+KA + L R++ G+PI AE PVTDFRE+RCRQ C +GG+CNFMHLK +
Sbjct 130 EDAEKAKNDLNNRWFNGQPIYAELCPVTDFRESRCRQHEVTTCSKGGFCNFMHLKAISAE 189
Query 194 LKRKLFNK 201
L +L+ +
Sbjct 190 LGDRLYGR 197
> hsa:100509022 splicing factor U2AF 35 kDa subunit-like
Length=219
Score = 192 bits (489), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 101/187 (54%), Positives = 131/187 (70%), Gaps = 6/187 (3%)
Query 14 MAEHLARIIGTEEDRVNCPFYWKIGACRHGDQCSRSHYKPSSSPTIVLRHMYPNPPVAIA 73
MAE A I GTE +VNC F +KIGAC HGD+CS H+KP+ S TI L ++Y NP A
Sbjct 1 MAECPASIFGTE--KVNCSFDFKIGACLHGDRCSWLHHKPTFSQTIALLNIYCNPQNASQ 58
Query 74 IAEGQNVSDELLD-EAADHFEAFFSEVFEEL-YKYGEVEDMVVCDNIGDHIIGNVYVKYS 131
A+G + L D E +H++ FF EVF EL KYGEVE+M VCDN+GDH++GNVY K
Sbjct 59 SADGLRCA--LSDVEVQEHYDEFFEEVFIELGEKYGEVEEMNVCDNLGDHLVGNVYFKLP 116
Query 132 DDDAAKKALSALQGRYYAGKPIQAEFTPVTDFREARCRQFVDGQCRRGGYCNFMHLKHVP 191
++ A+KA+ L R++ G+PI AE +PVTDFR A CRQ+ G+C RGG+CNFMHLK +
Sbjct 117 REEDAEKAVIDLNNRWFNGQPIHAELSPVTDFRGACCRQYEMGECTRGGFCNFMHLKPIS 176
Query 192 RSLKRKL 198
R L+R+L
Sbjct 177 RELRREL 183
> hsa:199746 U2AF1L4, FLJ35525, MGC33901, U2AF1-RS3, U2AF1L3,
U2AF1L3V1, U2AF1RS3, U2af26; U2 small nuclear RNA auxiliary
factor 1-like 4
Length=181
Score = 172 bits (435), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 83/187 (44%), Positives = 117/187 (62%), Gaps = 41/187 (21%)
Query 14 MAEHLARIIGTEEDRVNCPFYWKIGACRHGDQCSRSHYKPSSSPTIVLRHMYPNPPVAIA 73
MAE+LA I GTE+D+VNC FY+KIG CRHGD+CSR H KP+
Sbjct 1 MAEYLASIFGTEKDKVNCSFYFKIGVCRHGDRCSRLHNKPT------------------- 41
Query 74 IAEGQNVSDELLDEAADHFEAFFSEVFEELY-KYGEVEDMVVCDNIGDHIIGNVYVKYSD 132
F EVF EL KYGE+E+M VCDN+GDH++GNVYVK+
Sbjct 42 ---------------------FSQEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRR 80
Query 133 DDAAKKALSALQGRYYAGKPIQAEFTPVTDFREARCRQFVDGQCRRGGYCNFMHLKHVPR 192
++ ++A++ L R++ G+ + E +PVTDFRE+ CRQ+ G+C RGG+CNFMHL+ + +
Sbjct 81 EEDGERAVAELSNRWFNGQAVHGELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISQ 140
Query 193 SLKRKLF 199
+L+R+L+
Sbjct 141 NLQRQLY 147
> ath:AT1G27650 ATU2AF35A; RNA binding / nucleic acid binding
/ nucleotide binding / zinc ion binding
Length=246
Score = 154 bits (390), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 132/238 (55%), Gaps = 47/238 (19%)
Query 64 MYPNPPVAIAIAEGQNVSDELLD--EAADHFEAFFSEVFEELYKYGEVEDMVVCDNIGDH 121
MY P + I G + + LD + +HFE FF ++FEEL K+GE+E + +CDN+ DH
Sbjct 1 MYQRPDM---ITPGVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADH 57
Query 122 IIGNVYVKYSDDDAAKKALSALQGRYYAGKPIQAEFTPVTDFREARCRQFVDGQCRRGGY 181
+IGNVYV++ ++D A AL ALQGR+Y+G+PI A+F+PVTDFREA CRQ+ + C RGGY
Sbjct 58 MIGNVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGY 117
Query 182 CNFMHLKHVPRSLKRKLF-----------------------NKMYEE-----HPEYRQRV 213
CNFMH+K V R L+RKLF NK + H E+ R
Sbjct 118 CNFMHVKLVSRELRRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFSHRD 177
Query 214 R--------GGRRSRSRS------GSPHKHRRSPSLHRPERPERRTSEERRAMIAQWN 257
R G+RS RS GS + + SP R SEERRA I QWN
Sbjct 178 RDREFYRHGSGKRSSERSERQERDGSRGRRQASPKRGGSPGGGREGSEERRARIEQWN 235
> hsa:8233 ZRSR2, MGC142014, MGC142040, U2AF1-RS2, U2AF1L2, U2AF1RS2,
URP; zinc finger (CCCH type), RNA-binding motif and
serine/arginine rich 2
Length=482
Score = 137 bits (345), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 90/262 (34%), Positives = 130/262 (49%), Gaps = 49/262 (18%)
Query 25 EEDRVNCPFYWKIGACRHGDQCSRSHYKPSSSPTIVLRHMYP------------NPPVAI 72
E+DR NCPFY K GACR GD+CSR H P+SSPT++++ M+ +P ++
Sbjct 166 EKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMFTTFGMEQCRRDDYDPDASL 225
Query 73 AIAEGQNVSDELLDEAADHFEAFFSEVFEELYKYGEVEDMVVCDNIGDHIIGNVYVKYSD 132
+E +E F F+ +V E G+V V N+ H+ GNVYV+Y
Sbjct 226 EYSE---------EETYQQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQS 276
Query 133 DDAAKKALSALQGRYYAGKPIQAEFTPVTDFREARCRQFVDGQCRRGGYCNFMHLKHVPR 192
++ + ALS GR+YAG+ +Q EF PVT ++ A C F QC RG +CNF+H+ P
Sbjct 277 EEECQAALSLFNGRWYAGRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFRNPN 336
Query 193 S----LKRKL----------FNKMYEE------HPEYRQRVRGGRR-----SRSRSGSPH 227
+ R + F K E H +Y R+RG R S R+G
Sbjct 337 NEFWEANRDIYLSPDRTGSSFGKNSERRERMGHHDDYYSRLRGRRNPSPDHSYKRNG--- 393
Query 228 KHRRSPSLHRPERPERRTSEER 249
+ R S HR ++ +RTS+ R
Sbjct 394 ESERKSSRHRGKKSHKRTSKSR 415
> ath:AT1G10320 U2 snRNP auxiliary factor-related
Length=757
Score = 136 bits (342), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 101/168 (60%), Gaps = 6/168 (3%)
Query 22 IGTEEDRVNCPFYWKIGACRHGDQCSRSHYKPSSSPTIVLRHMYPNPPVAIAIAEGQNVS 81
GTE+D+ +CPF+ K GACR G +CSR H+ P+ S T+++++MY P + EG +
Sbjct 237 FGTEQDKAHCPFHLKTGACRFGQRCSRVHFYPNKSCTLLMKNMYNGPGITWEQDEGLEYT 296
Query 82 DELLDEAADHFEAFFSEVFEELYKYGEVEDMVVCDNIGDHIIGNVYVKYSDDDAAKKALS 141
DE EA +E F+ +V E KYGE+ + VC N H+ GNVYV Y ++A A
Sbjct 297 DE---EAELCYEEFYEDVHTEFLKYGELVNFKVCRNGSFHLKGNVYVHYRSLESAILAYQ 353
Query 142 ALQGRYYAGKPIQAEFTPVTDFREARCRQFVDGQ---CRRGGYCNFMH 186
++ GRY+AGK + EF ++ ++ A C +++ + C RG CNF+H
Sbjct 354 SINGRYFAGKQVNCEFVNISRWKVAICGEYMKSRLKTCSRGSACNFIH 401
> mmu:22184 Zrsr2, 35kDa, 5031411E02Rik, A230052C13Rik, C77286,
U2af1-rs2, URP; zinc finger (CCCH type), RNA binding motif
and serine/arginine rich 2
Length=541
Score = 132 bits (332), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 102/191 (53%), Gaps = 21/191 (10%)
Query 25 EEDRVNCPFYWKIGACRHGDQCSRSHYKPSSSPTIVLRHMYP------------NPPVAI 72
E+DR NCPFY K GACR GD+CSR H P+SSPT++++ M+ +P ++
Sbjct 170 EKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKGMFTTFGMEQCRRDDYDPDSSL 229
Query 73 AIAEGQNVSDELLDEAADHFEAFFSEVFEELYKYGEVEDMVVCDNIGDHIIGNVYVKYSD 132
+E +E F F+ +V E G+V V N+ H+ GNVYV+Y
Sbjct 230 EFSE---------EEIYQQFLDFYYDVLPEFKSVGKVIQFKVSCNLEPHLRGNVYVQYQS 280
Query 133 DDAAKKALSALQGRYYAGKPIQAEFTPVTDFREARCRQFVDGQCRRGGYCNFMHLKHVPR 192
++ + A S GR+YAG+ +Q EF PVT ++ A C F QC RG +CNF+H+ P
Sbjct 281 EEDCQAAFSVFNGRWYAGRQLQCEFCPVTRWKMAICGLFEVQQCPRGKHCNFLHVFRNPN 340
Query 193 SLKRKLFNKMY 203
+ R +Y
Sbjct 341 NEYRDANRDLY 351
> dre:100005490 zrsr2, fb73a09, wu:fb73a09; zinc finger (CCCH
type), RNA-binding motif and serine/arginine rich 2
Length=635
Score = 127 bits (318), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 97/172 (56%), Gaps = 3/172 (1%)
Query 23 GTEEDRVNCPFYWKIGACRHGDQCSRSHYKPSSSPTIVLRHMYPNPPVAIAIAEGQNVSD 82
GTE+D+ NCPF+ K GACR GD+CSR H P+SS T+++R M+ + + + + +
Sbjct 177 GTEKDKANCPFFLKTGACRFGDRCSRKHDHPASSCTLMVRGMFVSFGMEQSRRDDYDTDA 236
Query 83 ELL---DEAADHFEAFFSEVFEELYKYGEVEDMVVCDNIGDHIIGNVYVKYSDDDAAKKA 139
L +E F F+ + E G V V N H+ GNVYV+Y ++ K+A
Sbjct 237 SLEYSEEELHQQFLDFYEDALPEFKNAGRVVQFKVSCNFEPHLRGNVYVQYETEEQCKEA 296
Query 140 LSALQGRYYAGKPIQAEFTPVTDFREARCRQFVDGQCRRGGYCNFMHLKHVP 191
GR+YAG+ +Q EF+PVT ++ A C F +C +G +CNF+H+ P
Sbjct 297 FVMFNGRWYAGRQLQCEFSPVTRWKTAICGLFDRRKCPKGKHCNFLHVFRNP 348
> mmu:22183 Zrsr1, D11Ncvs75, Irlgs2, SP2, U2af1-rs1, U2afbp-rs;
zinc finger (CCCH type), RNA binding motif and serine/arginine
rich 1
Length=428
Score = 124 bits (310), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 104/191 (54%), Gaps = 3/191 (1%)
Query 22 IGTEEDRVNCPFYWKIGACRHGDQCSRSHYKPSSSPTIVLRHMYPNPPVAIAIAEGQNVS 81
+ E+ R +CPFY K GACR G++CSR H P+SSPT++++ M+ + + +
Sbjct 154 LRLEKYRPSCPFYNKTGACRFGNRCSRKHDFPTSSPTLLVKSMFTTFGMEQCRRDDYDSD 213
Query 82 DELL---DEAADHFEAFFSEVFEELYKYGEVEDMVVCDNIGDHIIGNVYVKYSDDDAAKK 138
L +E F F+ +V E G+V V N+ H+ GNVYV+Y ++ +
Sbjct 214 ANLEYSEEETYQQFLDFYHDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQA 273
Query 139 ALSALQGRYYAGKPIQAEFTPVTDFREARCRQFVDGQCRRGGYCNFMHLKHVPRSLKRKL 198
ALS GR+YAG+ +Q EF PVT ++ A C F +C +G +CNF+H+ P + R+
Sbjct 274 ALSLFNGRWYAGRQLQCEFCPVTRWKVAICGLFEMQKCPKGKHCNFLHVFRNPNNEFREA 333
Query 199 FNKMYEEHPEY 209
+Y P +
Sbjct 334 NRDIYMSPPAW 344
> ath:AT3G44785 U2AF splicing factor subunit, putative / U2 auxiliary
factor 38 kDa subunit, putative
Length=75
Score = 79.7 bits (195), Expect = 1e-14, Method: Composition-based stats.
Identities = 35/52 (67%), Positives = 43/52 (82%), Gaps = 0/52 (0%)
Query 14 MAEHLARIIGTEEDRVNCPFYWKIGACRHGDQCSRSHYKPSSSPTIVLRHMY 65
M EHLA I GTE+DRVNCPFY+KIG CR+GD+CSR + KPS SPT++L + Y
Sbjct 1 MVEHLASIYGTEKDRVNCPFYFKIGVCRNGDRCSRLYTKPSISPTLLLSNTY 52
> tgo:TGME49_112530 splicing factor protein, putative ; K13091
RNA-binding protein 39
Length=633
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 16/104 (15%)
Query 54 SSSPTIVLRHMYPNPPVAIAIAEGQNVSDELLDEAADHFEAFFSEVFEELYKYGEVEDMV 113
+ S +VL +M+ D L E F +V +E K+G VE +
Sbjct 535 TGSCNVVLHNMFA-------------AKDVNLKEDPHFFLDLGDDVRDECKKFGSVEKVW 581
Query 114 VCDNIGDHIIGNVYVKYSDDDAAKKALSALQGRYYAGKPIQAEF 157
+ + ++ GNV+++++ D A+ A AL GRY+AGKPI AEF
Sbjct 582 IDER---NVDGNVWIRFAHPDQARAAFGALNGRYFAGKPISAEF 622
> tpv:TP03_0691 splicing factor; K13091 RNA-binding protein 39
Length=644
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 18/115 (15%)
Query 52 KPSSSPTIVLRHMYPNPPVAIAIAEGQNVSDELLDEAADHFEAFFSEVFEELYKYGEVED 111
+P +S +VL +MY + ++ + F+ +V EE KYG V
Sbjct 544 QPLNSSNLVLSNMYTSAD---------------YEDNREFFDEIEEDVKEECGKYGTVIQ 588
Query 112 MVVCDNIGDHIIGNVYVKYSDDDAAKKALSALQGRYYAGKPIQAEFTPVTDFREA 166
+ V D G VYVK+ ++D A+ A +LQGRY+AG IQ + +++
Sbjct 589 VFVNKRNPD---GKVYVKFKNNDDAQAANKSLQGRYFAGNTIQVSYISDDQYQDV 640
> pfa:MAL13P1.120 splicing factor, putative; K13091 RNA-binding
protein 39
Length=864
Score = 47.0 bits (110), Expect = 7e-05, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query 81 SDELLDEAADHFEAFFSEVFEELYKYGEVEDMVVCDNIGDHIIGNVYVKYSDDDAAKKAL 140
+DE + D F +V EE KYG+V ++ + +I G +Y+KYS++D + K+
Sbjct 778 NDENIGSDPDFFNDILEDVKEECSKYGKVVNIWLDTK---NIDGKIYIKYSNNDESLKSF 834
Query 141 SALQGRYYAGKPIQAEF 157
L GRY+ G I A F
Sbjct 835 QFLNGRYFGGSLINAYF 851
> mmu:16589 Uhmk1, 4732477C12Rik, 4930500M09Rik, AA673513, AI449218,
AU021979, KIS, Kist; U2AF homology motif (UHM) kinase
1 (EC:2.7.11.1); K08877 U2AF homology motif (UHM) kinase 1
[EC:2.7.11.1]
Length=419
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query 64 MYPNPPVAIAIAEGQNVSDELLDEAADHFEAFFSEVFEELYKYGEVEDMVVC-DNIGDHI 122
M P P + + NV D+ E D +E +V EE KYG V ++V +N G
Sbjct 317 MLPTPVLRLL-----NVLDDDYLENEDEYEDVVEDVKEECQKYGPVVSLLVPKENPGR-- 369
Query 123 IGNVYVKYSDDDAAKKALSALQGRYYAGKPIQAEFTPVTDFREARCRQ 170
G V+V+Y++ +K A L GR + GK + A F P++ ++ Q
Sbjct 370 -GQVFVEYANAGDSKAAQKLLTGRMFDGKFVVATFYPLSAYKRGYLYQ 416
> cel:Y47G6A.20 rnp-6; RNP (RRM RNA binding domain) containing
family member (rnp-6); K12838 poly(U)-binding-splicing factor
PUF60
Length=749
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query 90 DHFEAFFSEVFEELYKYGEVEDMVVCDNIGDHIIGNVYVKYSDDDAAKKALSALQGRYYA 149
D E E+ EE KYG V D+V+ N + ++VKYSD +A +AL GR++
Sbjct 670 DIDEFLEGEIREECGKYGNVIDVVIA-NFASSGLVKIFVKYSDSMQVDRAKAALDGRFFG 728
Query 150 GKPIQAE 156
G ++AE
Sbjct 729 GNTVKAE 735
> xla:444779 MGC81970 protein
Length=512
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query 98 EVFEELYKYGEVEDMVVCDNIGDHIIGNVYVKYSDDDAAKKALSALQGRYYAGKPIQAEF 157
+V EE K+G + V N GNVYVK S +A A++AL GR++AGK I A +
Sbjct 431 DVMEECNKHGGAIHIYVDKNSPQ---GNVYVKCSTITSAIAAVNALHGRWFAGKMITAAY 487
Query 158 TPVTDF 163
PV +
Sbjct 488 VPVPTY 493
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query 91 HF---EAFFSEVFEELYKYGEVEDM-VVCDNIGDHIIGNVYVKYSDDDAAKKALSALQGR 146
HF E +FE +G +E + ++ D+ G ++ +SD + AKKAL L G
Sbjct 231 HFNITEDMLRGIFE---PFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGF 287
Query 147 YYAGKPIQ 154
AG+P++
Sbjct 288 ELAGRPMK 295
> cpv:cgd7_5220 splicing factor with 3 RRM domains ; K13091 RNA-binding
protein 39
Length=563
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 11/108 (10%)
Query 59 IVLRHMYPNPPVAIAIAEGQNVSDELLDEAADHFEAFFSEVFEELYKYGEVEDMVVCDNI 118
++L +M+ + ++ E DE +++ + +A +V EE KYG ++ C
Sbjct 464 LLLSNMFTEQSIKESMEE-----DETIEQILEEIQA---DVEEECGKYGT---LLECFLD 512
Query 119 GDHIIGNVYVKYSDDDAAKKALSALQGRYYAGKPIQAEFTPVTDFREA 166
+ + GNV+VKYS + A KA GR++AG+ + F +F +A
Sbjct 513 KEKMDGNVWVKYSRPEEASKAKMVFHGRFFAGRKLNVSFIKDEEFPKA 560
> xla:446785 rbm39, MGC80448, rnpc2; RNA binding motif protein
39; K13091 RNA-binding protein 39
Length=540
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query 98 EVFEELYKYGEVEDMVVCDNIGDHIIGNVYVKYSDDDAAKKALSALQGRYYAGKPIQAEF 157
+V EE K+G V + V N GNVYVK +A A++AL GR++AGK I A +
Sbjct 459 DVIEECNKHGGVVHLYVDKNSAQ---GNVYVKCPTIASAIAAVNALHGRWFAGKMITAAY 515
Query 158 TPVTDF 163
P+ +
Sbjct 516 VPLPTY 521
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query 91 HF---EAFFSEVFEELYKYGEVEDM-VVCDNIGDHIIGNVYVKYSDDDAAKKALSALQGR 146
HF E +FE +G +E + ++ D+ G ++ +SD + AKKAL L G
Sbjct 257 HFNITEDMLRGIFE---PFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGF 313
Query 147 YYAGKPIQ 154
AG+P++
Sbjct 314 ELAGRPMK 321
> dre:406251 rbm39a, rnpc2, zgc:55780; RNA binding motif protein
39a; K13091 RNA-binding protein 39
Length=523
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query 98 EVFEELYKYGEVEDMVVCDNIGDHIIGNVYVKYSDDDAAKKALSALQGRYYAGKPIQAEF 157
+V EE K+G V + V + GNVYVK AA A+SAL GR++ GK I A +
Sbjct 442 DVIEECNKHGGVIHIYVDKKSAE---GNVYVKCPTIPAAMAAVSALHGRWFGGKMITAAY 498
Query 158 TPVTDF 163
P+ +
Sbjct 499 VPLPTY 504
> dre:541556 rbm39b, rnpc2l, wu:fa97g07, wu:fb09c08, zgc:112139,
zgc:113117; RNA binding motif protein 39b
Length=539
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query 98 EVFEELYKYGEVEDMVVCDNIGDHIIGNVYVKYSDDDAAKKALSALQGRYYAGKPIQAEF 157
+V EE K+G V + V N GNVYVK A +S+L GR++AGK I A +
Sbjct 458 DVIEECRKHGGVIHIYVDKNSAQ---GNVYVKCPTIPVAMAVVSSLHGRWFAGKMITAAY 514
Query 158 TPVTDF 163
P+ +
Sbjct 515 VPLPTY 520
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query 91 HF---EAFFSEVFEELYKYGEVEDM-VVCDNIGDHIIGNVYVKYSDDDAAKKALSALQGR 146
HF E +FE +G++E + ++ D+ G ++ ++D + AKKAL L G
Sbjct 272 HFNITEDMLRGIFEP---FGKIEGIQLMMDSETGRSKGYGFISFADAECAKKALEQLNGF 328
Query 147 YYAGKPIQ 154
AG+P++
Sbjct 329 ELAGRPMK 336
> ath:AT1G30480 DRT111; DRT111; nucleic acid binding / nucleotide
binding; K12840 splicing factor 45
Length=387
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 22/146 (15%)
Query 22 IGTEEDRVNCPFYWKIGACRHGDQCSRSHYKPSSSPTIVLRHMYPN-PPVAI-----AIA 75
+G E + P K R G + S K SS+ V++ + N P + +
Sbjct 233 LGKSEQGITTPLMAKKTDRRAGVIVNASENKSSSAEKKVVKSVNINGEPTRVLLLRNMVG 292
Query 76 EGQNVSDELLDEAADHFEAFFSEVFEELYKYGEVEDMVVCD----NIGDHIIGNVYVKYS 131
GQ V DEL DE V E KYG V +++ + N H ++V++S
Sbjct 293 PGQ-VDDELEDE-----------VGGECGKYGTVTRVLIFEITEPNFPVHEAVRIFVQFS 340
Query 132 DDDAAKKALSALQGRYYAGKPIQAEF 157
+ KAL L GRY+ G+ ++A F
Sbjct 341 RPEETTKALVDLDGRYFGGRTVRATF 366
> pfa:MAL13P1.35 U1 small nuclear ribonucleoprotein A, putative
Length=449
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 11/98 (11%)
Query 78 QNVSDEL-LDEAADHFEAFFSEVFEELYKYGEVEDMVVCDNIGDHIIGNVYVKYSDDDAA 136
+N++D + DE + + F+ YGE++D++V + G +V Y D + A
Sbjct 180 KNLNDRVKTDEMKKNLKDLFNT-------YGEIKDLIVMKSFWRK--GQAWVVYDDKECA 230
Query 137 KKALSALQGRYYAGKPIQAEFT-PVTDFREARCRQFVD 173
KAL+ALQG GK +Q F+ +D R FV+
Sbjct 231 TKALNALQGYVLFGKIMQINFSHNKSDIHAKRDGTFVE 268
> cel:Y55F3AM.3 hypothetical protein; K13091 RNA-binding protein
39
Length=580
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 0/42 (0%)
Query 124 GNVYVKYSDDDAAKKALSALQGRYYAGKPIQAEFTPVTDFRE 165
GNVYVK A +A+SAL GR+++GK I A + PV + +
Sbjct 470 GNVYVKCPSIVIAHQAVSALHGRWFSGKVITANYVPVNSYHD 511
> hsa:9584 RBM39, CAPER, CAPERalpha, CC1.3, DKFZp781C0423, FLJ44170,
HCC1, RNPC2, fSAP59; RNA binding motif protein 39; K13091
RNA-binding protein 39
Length=524
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query 98 EVFEELYKYGEVEDMVVCDNIGDHIIGNVYVKYSDDDAAKKALSALQGRYYAGKPIQAEF 157
+V EE K+G V + V N GNVYVK AA A++AL GR++AGK I A +
Sbjct 443 DVIEECNKHGGVIHIYVDKNSAQ---GNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAY 499
Query 158 TPVTDF 163
P+ +
Sbjct 500 VPLPTY 505
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query 91 HF---EAFFSEVFEELYKYGEVEDM-VVCDNIGDHIIGNVYVKYSDDDAAKKALSALQGR 146
HF E +FE +G +E + ++ D+ G ++ +SD + AKKAL L G
Sbjct 258 HFNITEDMLRGIFE---PFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGF 314
Query 147 YYAGKPIQA 155
AG+P++
Sbjct 315 ELAGRPMKV 323
> dre:767721 uhmk1, MGC153241, zgc:153241; U2AF homology motif
(UHM) kinase 1 (EC:2.7.11.1); K08877 U2AF homology motif (UHM)
kinase 1 [EC:2.7.11.1]
Length=410
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query 90 DHFEAFFSEVFEELYKYGEVEDMVV-CDNIGDHIIGNVYVKYSDDDAAKKALSALQGRYY 148
D +E ++ EE KYG V +++ +N G G V+V+Y++ +K+A L GR +
Sbjct 329 DEYEDIIEDMKEECQKYGTVVSLLIPKENPGK---GQVFVEYANAGDSKEAQRLLTGRTF 385
Query 149 AGKPIQAEFTPVTDFREARCRQFV 172
GK + A F P+ ++ Q V
Sbjct 386 DGKFVVATFYPLGAYKRGYLYQTV 409
> mmu:170791 Rbm39, 1500012C14Rik, 2310040E03Rik, B330012G18Rik,
C79248, R75070, Rnpc2, caper; RNA binding motif protein 39;
K13091 RNA-binding protein 39
Length=530
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query 98 EVFEELYKYGEVEDMVVCDNIGDHIIGNVYVKYSDDDAAKKALSALQGRYYAGKPIQAEF 157
+V EE K+G V + V N GNVYVK AA A++AL GR++AGK I A +
Sbjct 449 DVIEECNKHGGVIHIYVDKNSAQ---GNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAY 505
Query 158 TPVTDF 163
P+ +
Sbjct 506 VPLPTY 511
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query 91 HF---EAFFSEVFEELYKYGEVEDM-VVCDNIGDHIIGNVYVKYSDDDAAKKALSALQGR 146
HF E +FE +G +E + ++ D+ G ++ +SD + AKKAL L G
Sbjct 258 HFNITEDMLRGIFE---PFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGF 314
Query 147 YYAGKPIQA 155
AG+P++
Sbjct 315 ELAGRPMKV 323
> dre:415211 puf60b, SIAHBP1, fe37c05, repressor, si:ch211-12p8.2,
si:zc12p8.2, wu:fb33e11, wu:fe37c05, zgc:86806; poly-U
binding splicing factor b
Length=502
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query 98 EVFEELYKYGEVEDMVV-----CDNIGDHIIGNVYVKYSDDDAAKKALSALQGRYYAGKP 152
EV EE KYG V +++ + II ++V++SD KA+ AL R++AG+
Sbjct 425 EVMEECGKYGAVNRVIIYQERQGEEDDAEIIVKIFVEFSDAGEMNKAIQALNNRWFAGRK 484
Query 153 IQAEF 157
+ AE
Sbjct 485 VVAEL 489
> pfa:PF14_0513 RNA binding protein, putative; K12840 splicing
factor 45
Length=511
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 0/47 (0%)
Query 111 DMVVCDNIGDHIIGNVYVKYSDDDAAKKALSALQGRYYAGKPIQAEF 157
++VV N+ D + +Y +Y D A+ AL+ +GR +AG+ +QA F
Sbjct 452 NIVVDKNLLDALAVKIYCEYESKDQAQNALNTFKGRTFAGRKVQASF 498
> tgo:TGME49_034520 U2 snRNP auxiliary factor or splicing factor,
putative ; K12837 splicing factor U2AF 65 kDa subunit
Length=553
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 22/134 (16%)
Query 54 SSSPTIVLRHMYPNPPVAIAIAEGQNVSD---------------ELLDEAADHFEAFFSE 98
+S P + + + +P VA+ + + + + +L+D +EA +
Sbjct 418 TSLPNSMTQKLLSDPLVAVQVQAARKIGERPSKVVQLLNCVYQEDLID--PKEYEAICDD 475
Query 99 VFEELYKYGEVEDMVVCDNIGD----HIIGNVYVKYSDDDAAKKALSALQGRYY-AGKPI 153
+ +E K+G +E+++V D +G V+++YSD AA+KA L GR + + + +
Sbjct 476 IKQEAEKHGALEEVLVPKPNEDLSYREGVGKVFLRYSDVTAARKAQLMLNGRRFDSNRVV 535
Query 154 QAEFTPVTDFREAR 167
A F P F R
Sbjct 536 CAAFFPEEKFAAGR 549
> sce:YGR159C NSR1, SHE5; Nsr1p; K11294 nucleolin
Length=414
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query 92 FEAFFSEVFEELYKYGEVEDMVVCDNI-GDHIIGNVYVKYSDDDAAKKALSALQGRYYAG 150
F A +FE K+GEV + + + + G YV++S+ + AKKAL ALQG Y
Sbjct 276 FNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDN 335
Query 151 KPIQAEFT 158
+P++ +F+
Sbjct 336 RPVRLDFS 343
> ath:AT2G16940 RNA recognition motif (RRM)-containing protein
Length=561
Score = 38.9 bits (89), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query 87 EAADHFEAFFSE-VFEELYKYGEVEDMVVCDNIGDHIIGNVYVKYSDDDAAKKALSALQG 145
E D F+ E V EE K+G++ + V N +G VY+++ + AA A AL G
Sbjct 478 ETEDDFDEDIKEDVKEECSKFGKLNHIFVDKNS----VGFVYLRFENAQAAIGAQRALHG 533
Query 146 RYYAGKPIQAEF 157
R++AGK I A +
Sbjct 534 RWFAGKMITATY 545
> ath:AT5G16260 RNA recognition motif (RRM)-containing protein;
K13093 HIV Tat-specific factor 1
Length=519
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 18/106 (16%)
Query 52 KPSSSPTIVLRHMYPNPPVAIAIAEGQNVSDELLDEAADHFEAFFSEVFEELYKYGEVED 111
K S T+VLR+M+ + + ++DE D +V EE K+G +
Sbjct 401 KVSIPATVVLRYMF---------SPAELMADE------DLVAELEEDVKEESLKHGPFDS 445
Query 112 MVVCDNIGDHIIGNVYVKYSDDDAAKKALSALQGRYYAGKPIQAEF 157
+ VC++ H G V V++ D A+K + A+ GR+YA + I A
Sbjct 446 VKVCEH---HPQGVVLVRFKDRRDAQKCIEAMNGRWYAKRQIHASL 488
> bbo:BBOV_II004960 18.m06413; RNA recognition motif (RRM)-containing
protein; K12837 splicing factor U2AF 65 kDa subunit
Length=383
Score = 38.5 bits (88), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query 99 VFEELYKYGEVEDMVV---CDNIG-DHIIGNVYVKYSDDDAAKKALSALQGRYYAGKPIQ 154
+ EE KYG +ED+V+ D++ +G V++K+ D+ ++++A L GR + G I
Sbjct 306 IMEEAKKYGHLEDIVIPRPNDDLSYKEGVGKVFLKFGDEISSRRAQYMLNGRVFDGNRIV 365
Query 155 -AEFTPVTDFREAR 167
A F P+ F + +
Sbjct 366 CAAFFPLDRFLKGK 379
> ath:AT1G60900 U2 snRNP auxiliary factor large subunit, putative;
K12837 splicing factor U2AF 65 kDa subunit
Length=589
Score = 38.1 bits (87), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query 80 VSDELLDEAADHFEAFFSEVFEELYKYGEVEDMVVCDNIGDHI----IGNVYVKYSDDDA 135
+D+L D+ + + ++ +E K+G + ++V+ DH +G V+++Y+D D
Sbjct 497 TADDLRDD--EEYAEIMEDMRQEGGKFGNLVNVVIPRPNPDHDPTPGVGKVFLEYADVDG 554
Query 136 AKKALSALQGRYYAGKPIQAEFTP 159
+ KA S + GR + G + A + P
Sbjct 555 SSKARSGMNGRKFGGNQVVAVYYP 578
> ath:AT1G60830 U2 snRNP auxiliary factor large subunit, putative
Length=111
Score = 38.1 bits (87), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query 80 VSDELLDEAADHFEAFFSEVFEELYKYGEVEDMVVCDNIGDHI----IGNVYVKYSDDDA 135
+D+L D+A + ++ +E K+G + ++V+ DH +G V+++Y+D D
Sbjct 19 TADDLRDDA--EYADIMEDMSQEGGKFGNLVNVVIPRPNPDHDPTPGVGKVFLEYADVDG 76
Query 136 AKKALSALQGRYYAGKPIQAEFTP 159
+ KA S + GR + G + A + P
Sbjct 77 SSKARSGMNGRKFGGNQVVAVYYP 100
> cel:F58B3.7 hypothetical protein; K12840 splicing factor 45
Length=371
Score = 38.1 bits (87), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 14/77 (18%)
Query 95 FFSEVFEELYKYGEVEDMVVCDNIGDHIIGN--------VYVKYSDDDAAKKALSALQGR 146
F E+ EE+ K G+V +++V H+ + V+V+++++ A KA + GR
Sbjct 296 FADEIKEEMEKCGQVVNVIV------HVDESQEEDRQVRVFVEFTNNAQAIKAFVMMNGR 349
Query 147 YYAGKPIQAEFTPVTDF 163
++ G+ + A F V+D+
Sbjct 350 FFGGRSVSAGFQNVSDY 366
> hsa:127933 UHMK1, DKFZp434C1613, FLJ23015, KIS, KIST; U2AF homology
motif (UHM) kinase 1 (EC:2.7.11.1); K08877 U2AF homology
motif (UHM) kinase 1 [EC:2.7.11.1]
Length=345
Score = 37.7 bits (86), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query 101 EELYKYGEVEDMVVC-DNIGDHIIGNVYVKYSDDDAAKKALSALQGRYYAGKPIQAEFTP 159
EE KYG V ++V +N G G V+V+Y++ +K A L GR + GK + A F P
Sbjct 275 EECQKYGPVVSLLVPKENPGR---GQVFVEYANAGDSKAAQKLLTGRMFDGKFVVATFYP 331
Query 160 VTDFREARCRQ 170
++ ++ Q
Sbjct 332 LSAYKRGYLYQ 342
> cel:Y92C3B.2 uaf-1; U2AF splicing factor family member (uaf-1);
K12837 splicing factor U2AF 65 kDa subunit
Length=474
Score = 37.4 bits (85), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 19/122 (15%)
Query 66 PNPPVAIA---IAEGQNVSDELL--------DE--AADHFEAFFSEVFEELYKYGEVEDM 112
PN AIA +++G + E+L DE A D +E +V +E KYG V +
Sbjct 356 PNSASAIAGIDLSQGAGRATEILCLMNMVTEDELKADDEYEEILEDVRDECSKYGIVRSL 415
Query 113 VVCDNIGDHI---IGNVYVKYSDDDAAKKALSALQGRYYAGKPIQAEFTPVTDFREARCR 169
+ DH +G V+V+++ ++A +AL GR +A + + + V + R
Sbjct 416 EIPRPYEDHPVPGVGKVFVEFASTSDCQRAQAALTGRKFANRTVVTSYYDVDKYHN---R 472
Query 170 QF 171
QF
Sbjct 473 QF 474
> ath:AT1G04990 zinc finger (CCCH-type) family protein
Length=404
Score = 37.0 bits (84), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 0/43 (0%)
Query 8 SNQTFTMAEHLARIIGTEEDRVNCPFYWKIGACRHGDQCSRSH 50
S+ + MA L R + D+ C F+ G C++GD C SH
Sbjct 244 SSASMAMAVALNRGLSESSDQPECRFFMNTGTCKYGDDCKYSH 286
Lambda K H
0.320 0.135 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 9827099128
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
Posted date: Sep 17, 2011 2:57 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40