bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
164,496 sequences; 82,071,388 total letters
Query= Eten_2063_orf1
Length=160
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_058210 DNA-directed RNA polymerase II subunit RPB2,... 155 7e-38
tpv:TP04_0340 DNA-directed RNA polymerase II subunit (EC:2.7.7... 153 2e-37
bbo:BBOV_II002050 18.m06162; DNA-directed RNA polymerase, beta... 143 2e-34
cpv:cgd7_3720 RNA polymerase beta subunit ; K03010 DNA-directe... 142 5e-34
pfa:PFB0715w DNA-directed RNA polymerase II second largest sub... 138 6e-33
ath:AT4G21710 NRPB2; NRPB2; DNA binding / DNA-directed RNA pol... 93.6 2e-19
sce:YOR151C RPB2, RPB150, RPO22, SIT2, SOH2; B150 (EC:2.7.7.6)... 89.0 6e-18
dre:100149268 polr2b, zgc:109952; polymerase (RNA) II (DNA dir... 81.6 1e-15
xla:398890 polr2b, MGC68569; polymerase (RNA) II (DNA directed... 80.9 2e-15
mmu:231329 Polr2b, MGC47046, Pol2rb, Rpb140, Rpb2; polymerase ... 80.5 2e-15
hsa:5431 POLR2B, POL2RB, RPB2, hRPB140, hsRPB2; polymerase (RN... 80.5 2e-15
cel:C26E6.4 rpb-2; RNA Polymerase II (B) subunit family member... 78.6 7e-15
tgo:TGME49_072740 DNA-directed RNA polymerase III subunit, put... 46.2 5e-05
dre:562329 polr3b, si:dkey-103i16.3, wu:fc20h06; polymerase (R... 45.1 1e-04
cel:F09F7.3 hypothetical protein; K03021 DNA-directed RNA poly... 44.3 2e-04
mmu:70428 Polr3b, 2700078H01Rik, A330032P03Rik, C85372, RPC2; ... 43.5 3e-04
pfa:PFL0330c DNA-directed RNA polymerase III subunit, putative... 40.0 0.004
ath:AT3G23780 NRPD2A; NRPD2A; DNA binding / DNA-directed RNA p... 39.7 0.005
sce:YOR207C RET1, PDS2, RPC128, RPC2; C128 (EC:2.7.7.6); K0302... 39.3 0.006
bbo:BBOV_III000960 17.m07112; DNA-directed RNA polymerase, bet... 38.1 0.012
cpv:cgd8_170 DNA-directed RNA polymerase beta subunit ; K03021... 36.2 0.048
tpv:TP03_0746 DNA-directed RNA polymerase III subunit; K03021 ... 33.9 0.21
ath:AT5G45140 NRPC2; NRPC2; DNA binding / DNA-directed RNA pol... 33.1 0.37
xla:414609 iqcb1, MGC81507, nphp5, piq, slsn5; IQ motif contai... 31.6 1.0
tpv:TP04_0556 hypothetical protein 30.8 1.8
hsa:9881 TRANK1, KIAA0342, LBA1; tetratricopeptide repeat and ... 30.4 2.8
hsa:27255 CNTN6, MGC133256, NB3; contactin 6; K06764 contactin 6 30.0
dre:556414 si:dkey-251e24.6 29.3 5.8
eco:b1970 hiuH, ECK1966, JW1953, yedX; hydroxyisourate hydrola... 28.5 9.6
> tgo:TGME49_058210 DNA-directed RNA polymerase II subunit RPB2,
putative (EC:2.7.7.6); K03010 DNA-directed RNA polymerase
II subunit RPB2 [EC:2.7.7.6]
Length=1259
Score = 155 bits (391), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 70/99 (70%), Positives = 83/99 (83%), Gaps = 0/99 (0%)
Query 62 IDSEDTWAVVGSFFEGKGLVSQQVESFNDFASYKLQEIIDAHPPIEIRPSPQYRPEEDVE 121
+D + WAVV SFF GLV+QQ+ESFNDF SYK+QEIID HPPIEIRP+PQYRPEE+VE
Sbjct 86 VDQDACWAVVSSFFHSHGLVNQQLESFNDFVSYKIQEIIDEHPPIEIRPTPQYRPEEEVE 145
Query 122 LDVRYRLKFGQLSLNRPAAQEKEGMQKNLWPQESRTRNL 160
+V YRLK QLSLNRP+ +EKEG+ K+LWP E+RTRNL
Sbjct 146 SNVIYRLKMDQLSLNRPSVEEKEGISKHLWPYEARTRNL 184
> tpv:TP04_0340 DNA-directed RNA polymerase II subunit (EC:2.7.7.6);
K03010 DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Length=1190
Score = 153 bits (387), Expect = 2e-37, Method: Composition-based stats.
Identities = 68/114 (59%), Positives = 87/114 (76%), Gaps = 4/114 (3%)
Query 51 QEDQHDEQQQEIDS----EDTWAVVGSFFEGKGLVSQQVESFNDFASYKLQEIIDAHPPI 106
Q+ H + + +D EDTW V+GSFF GLV QQ+ESFNDF +Y++QEIIDAHPPI
Sbjct 41 QDLDHSQYLKAVDENFTEEDTWKVIGSFFNEHGLVHQQIESFNDFITYRMQEIIDAHPPI 100
Query 107 EIRPSPQYRPEEDVELDVRYRLKFGQLSLNRPAAQEKEGMQKNLWPQESRTRNL 160
EI P P YRPEE+ E + YRLKFGQLSLN+P+ +EK+G+ K++WPQE+R RNL
Sbjct 101 EITPQPNYRPEEEEENSILYRLKFGQLSLNKPSVEEKDGVFKHIWPQEARLRNL 154
> bbo:BBOV_II002050 18.m06162; DNA-directed RNA polymerase, beta
subunit family protein (EC:2.7.7.6); K03010 DNA-directed
RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Length=1207
Score = 143 bits (361), Expect = 2e-34, Method: Composition-based stats.
Identities = 62/119 (52%), Positives = 89/119 (74%), Gaps = 3/119 (2%)
Query 45 NDELQQQEDQHDEQQQEIDS---EDTWAVVGSFFEGKGLVSQQVESFNDFASYKLQEIID 101
++++ +Q + + + E+D+ ED+W V+GSFF GLV QQ+ESFNDF +Y++QE ID
Sbjct 36 DNDITKQTNVINYGKNELDAFTDEDSWKVIGSFFNTHGLVHQQIESFNDFVTYRMQETID 95
Query 102 AHPPIEIRPSPQYRPEEDVELDVRYRLKFGQLSLNRPAAQEKEGMQKNLWPQESRTRNL 160
HPPIEI P PQY PE++ E ++ Y+LKFGQLSLN+P +E G+ K++WPQE+R RNL
Sbjct 96 QHPPIEITPQPQYHPEDERENNIVYKLKFGQLSLNKPCVEEMAGVLKHIWPQEARLRNL 154
> cpv:cgd7_3720 RNA polymerase beta subunit ; K03010 DNA-directed
RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Length=1177
Score = 142 bits (358), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 61/105 (58%), Positives = 83/105 (79%), Gaps = 0/105 (0%)
Query 56 DEQQQEIDSEDTWAVVGSFFEGKGLVSQQVESFNDFASYKLQEIIDAHPPIEIRPSPQYR 115
+++ EI ED+WA++G++F +GLV+QQ+ESFNDF YKLQEI+D HPPI I P QYR
Sbjct 10 EQKNDEIQQEDSWALIGTYFRDRGLVNQQLESFNDFIMYKLQEIVDEHPPIIITPQSQYR 69
Query 116 PEEDVELDVRYRLKFGQLSLNRPAAQEKEGMQKNLWPQESRTRNL 160
P+E ++ VRY LKFGQLSL+RP+ +E+EG+ + LWP E+R RNL
Sbjct 70 PDEQIDTKVRYVLKFGQLSLSRPSVEEREGVARGLWPNEARLRNL 114
> pfa:PFB0715w DNA-directed RNA polymerase II second largest subunit,
putative; K03010 DNA-directed RNA polymerase II subunit
RPB2 [EC:2.7.7.6]
Length=1340
Score = 138 bits (348), Expect = 6e-33, Method: Composition-based stats.
Identities = 62/112 (55%), Positives = 78/112 (69%), Gaps = 0/112 (0%)
Query 49 QQQEDQHDEQQQEIDSEDTWAVVGSFFEGKGLVSQQVESFNDFASYKLQEIIDAHPPIEI 108
+Q D ++I +D+W V+GSFF GLV+QQ+ES+NDF Y++QEIID HP IEI
Sbjct 18 EQLSDNDKNPNEQITEDDSWVVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPKIEI 77
Query 109 RPSPQYRPEEDVELDVRYRLKFGQLSLNRPAAQEKEGMQKNLWPQESRTRNL 160
RP PQYR + D ++ Y LKFGQLSL+RP EK KNLWPQE+R RNL
Sbjct 78 RPQPQYRTDRDENDNIIYSLKFGQLSLDRPFYDEKNLSNKNLWPQEARLRNL 129
> ath:AT4G21710 NRPB2; NRPB2; DNA binding / DNA-directed RNA polymerase;
K03010 DNA-directed RNA polymerase II subunit RPB2
[EC:2.7.7.6]
Length=1188
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
Query 56 DEQQQEIDSEDTWAVVGSFFEGKGLVSQQVESFNDFASYKLQEIIDAHPPIEIRPSPQYR 115
D+ +EI ED WAV+ ++FE KGLV QQ++SF++F +QEI+D IEIRP Q+
Sbjct 15 DDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHN 74
Query 116 PEEDVEL-DVRYRLKFGQLSLNRPAAQEKEGMQKNLWPQESRTRNL 160
P + + Y++ FGQ+ L++P E +G L+P+ +R RNL
Sbjct 75 PGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNL 120
> sce:YOR151C RPB2, RPB150, RPO22, SIT2, SOH2; B150 (EC:2.7.7.6);
K03010 DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Length=1224
Score = 89.0 bits (219), Expect = 6e-18, Method: Composition-based stats.
Identities = 45/118 (38%), Positives = 70/118 (59%), Gaps = 3/118 (2%)
Query 45 NDELQQQEDQH--DEQQQEIDSEDTWAVVGSFFEGKGLVSQQVESFNDFASYKLQEIIDA 102
N E ED + +++ I +ED+WAV+ +FF KGLVSQQ++SFN F Y LQ+II
Sbjct 6 NSEKYYDEDPYGFEDESAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICE 65
Query 103 HPPIEIRPSPQYRPEEDVELDVRYRLKFGQLSLNRPAAQEKEGMQKNLWPQESRTRNL 160
+ + Q+ E D + +Y + FG++ + +P E +G+ L+PQE+R RNL
Sbjct 66 DSTLILEQLAQHTTESD-NISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNL 122
> dre:100149268 polr2b, zgc:109952; polymerase (RNA) II (DNA directed)
polypeptide B (EC:2.7.7.6); K03010 DNA-directed RNA
polymerase II subunit RPB2 [EC:2.7.7.6]
Length=1174
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 73/118 (61%), Gaps = 2/118 (1%)
Query 43 DENDELQQQEDQHDEQQQEIDSEDTWAVVGSFFEGKGLVSQQVESFNDFASYKLQEIIDA 102
D+++++Q ED DE ++ E W V+ S+F+ KGLV QQ++SF++F +Q I++
Sbjct 3 DQDEDIQYDEDD-DEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61
Query 103 HPPIEIRPSPQYRPEEDVELDVRYRLKFGQLSLNRPAAQEKEGMQKNLWPQESRTRNL 160
PPI+++ Q+ E VE RY LKF Q+ L++P E++G + P E+R RNL
Sbjct 62 APPIDLQAEAQHTSGE-VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNL 118
> xla:398890 polr2b, MGC68569; polymerase (RNA) II (DNA directed)
polypeptide B, 140kDa; K03010 DNA-directed RNA polymerase
II subunit RPB2 [EC:2.7.7.6]
Length=949
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 72/118 (61%), Gaps = 2/118 (1%)
Query 43 DENDELQQQEDQHDEQQQEIDSEDTWAVVGSFFEGKGLVSQQVESFNDFASYKLQEIIDA 102
D ++++Q ED DE ++ E W V+ S+F+ KGLV QQ++SF++F +Q I++
Sbjct 3 DADEDMQYDEDD-DEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61
Query 103 HPPIEIRPSPQYRPEEDVELDVRYRLKFGQLSLNRPAAQEKEGMQKNLWPQESRTRNL 160
PPI+++ Q+ E VE RY LKF Q+ L++P E++G + P E+R RNL
Sbjct 62 APPIDLQAEAQHTTGE-VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNL 118
> mmu:231329 Polr2b, MGC47046, Pol2rb, Rpb140, Rpb2; polymerase
(RNA) II (DNA directed) polypeptide B (EC:2.7.7.6); K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Length=1174
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 72/118 (61%), Gaps = 2/118 (1%)
Query 43 DENDELQQQEDQHDEQQQEIDSEDTWAVVGSFFEGKGLVSQQVESFNDFASYKLQEIIDA 102
D ++++Q ED DE ++ E W V+ S+F+ KGLV QQ++SF++F +Q I++
Sbjct 3 DADEDMQYDEDD-DEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61
Query 103 HPPIEIRPSPQYRPEEDVELDVRYRLKFGQLSLNRPAAQEKEGMQKNLWPQESRTRNL 160
PPI+++ Q+ E VE RY LKF Q+ L++P E++G + P E+R RNL
Sbjct 62 APPIDLQAEAQHASGE-VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNL 118
> hsa:5431 POLR2B, POL2RB, RPB2, hRPB140, hsRPB2; polymerase (RNA)
II (DNA directed) polypeptide B, 140kDa (EC:2.7.7.6); K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Length=1174
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 72/118 (61%), Gaps = 2/118 (1%)
Query 43 DENDELQQQEDQHDEQQQEIDSEDTWAVVGSFFEGKGLVSQQVESFNDFASYKLQEIIDA 102
D ++++Q ED DE ++ E W V+ S+F+ KGLV QQ++SF++F +Q I++
Sbjct 3 DADEDMQYDEDD-DEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61
Query 103 HPPIEIRPSPQYRPEEDVELDVRYRLKFGQLSLNRPAAQEKEGMQKNLWPQESRTRNL 160
PPI+++ Q+ E VE RY LKF Q+ L++P E++G + P E+R RNL
Sbjct 62 APPIDLQAEAQHASGE-VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNL 118
> cel:C26E6.4 rpb-2; RNA Polymerase II (B) subunit family member
(rpb-2); K03010 DNA-directed RNA polymerase II subunit RPB2
[EC:2.7.7.6]
Length=1193
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Query 53 DQHDEQQQEIDSEDTWAVVGSFFEGKGLVSQQVESFNDFASYKLQEIIDAHPPIEIRPSP 112
D DE E E W V+ ++F+ KGLV QQ++SF++F +Q I++ PP+E++
Sbjct 19 DDSDEISAEAWQEACWVVISAYFDEKGLVRQQLDSFDEFVQMNVQRIVEDSPPVELQSEN 78
Query 113 QYRPEEDVELDVRYRLKFGQLSLNRPAAQEKEGMQKNLWPQESRTRNL 160
Q+ D+E ++ LKF Q+ L++P EK+G + P E+R RNL
Sbjct 79 QHL-GTDMENPAKFSLKFNQIYLSKPTHWEKDGAPMPMMPNEARLRNL 125
> tgo:TGME49_072740 DNA-directed RNA polymerase III subunit, putative
(EC:2.7.7.6); K03021 DNA-directed RNA polymerase III
subunit RPC2 [EC:2.7.7.6]
Length=1332
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 11/95 (11%)
Query 66 DTWAVVGSFFEGKGLVSQQVESFNDFASYKLQEIIDAHPPIEIRPSPQYRPEEDVELDVR 125
D W ++ +FF KGLV Q +ES+N F +LQ I+ A P R + ++D
Sbjct 162 DKWRLLPAFFAAKGLVHQHIESYNFFVDTELQNILRA---------PSNRLVKS-DVDPS 211
Query 126 YRLKFGQLSLNRPAAQEKEGMQKNLWPQESRTRNL 160
+ ++F +S+ P +E +Q+ L P+ RTR +
Sbjct 212 FFIEFLNISVGTPRYEEGMILQR-LTPRICRTREI 245
> dre:562329 polr3b, si:dkey-103i16.3, wu:fc20h06; polymerase
(RNA) III (DNA directed) polypeptide B; K03021 DNA-directed
RNA polymerase III subunit RPC2 [EC:2.7.7.6]
Length=1140
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 12/96 (12%)
Query 65 EDTWAVVGSFFEGKGLVSQQVESFNDFASYKLQEIIDAHPPIEIRPSPQYRPEEDVELDV 124
E+ W ++ +F + KGLV Q ++SFN F + ++++I+ A+ I P
Sbjct 22 EEKWKLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKITSDADPM----------- 70
Query 125 RYRLKFGQLSLNRPAAQEKEGMQKNLWPQESRTRNL 160
+ LK+ + + P +E + + + P E R R++
Sbjct 71 -WYLKYLNIYVGMPDVEESFNVTRPVSPHECRLRDM 105
> cel:F09F7.3 hypothetical protein; K03021 DNA-directed RNA polymerase
III subunit RPC2 [EC:2.7.7.6]
Length=1154
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 54/105 (51%), Gaps = 13/105 (12%)
Query 57 EQQQEIDSEDTWAVVGSFFEGKGLVSQQVESFNDFASYKLQEIIDAHPPIEIRPSPQYRP 116
+ Q+ + ED W +V +F + +GLV Q + SF+ F +++ I+ ++ I +P
Sbjct 18 KDQKCMPLEDKWLLVPAFLKVRGLVKQHLVSFDHFVQEEIRSIMLSNQKITSDANPN--- 74
Query 117 EEDVELDVRYRLKFGQLSLNRPAAQEKEGMQKN-LWPQESRTRNL 160
+ LK+ + + +P+++E M + + PQE R R++
Sbjct 75 ---------FYLKYLDIRIGKPSSEEGLNMTHDKITPQECRLRDM 110
> mmu:70428 Polr3b, 2700078H01Rik, A330032P03Rik, C85372, RPC2;
polymerase (RNA) III (DNA directed) polypeptide B (EC:2.7.7.6);
K03021 DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]
Length=1133
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 48/96 (50%), Gaps = 12/96 (12%)
Query 65 EDTWAVVGSFFEGKGLVSQQVESFNDFASYKLQEIIDAHPPIEIRPSPQYRPEEDVELDV 124
E+ W ++ +F + KGLV Q ++SFN F + ++++I+ A+ + P
Sbjct 24 EEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPM----------- 72
Query 125 RYRLKFGQLSLNRPAAQEKEGMQKNLWPQESRTRNL 160
+ LK+ + + P +E + + + P E R R++
Sbjct 73 -WYLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDM 107
> pfa:PFL0330c DNA-directed RNA polymerase III subunit, putative
(EC:2.7.7.6); K03021 DNA-directed RNA polymerase III subunit
RPC2 [EC:2.7.7.6]
Length=1450
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 50/95 (52%), Gaps = 11/95 (11%)
Query 66 DTWAVVGSFFEGKGLVSQQVESFNDFASYKLQEIIDAHPPIEIRPSPQYRPEEDVELDVR 125
+ W ++ ++ + KGLV Q +ES+N F +++ I++A I+ ++D
Sbjct 241 EKWKLLPAYLKVKGLVKQHIESYNYFIKREIKTIMNATTNKIIKS----------DIDEH 290
Query 126 YRLKFGQLSLNRPAAQEKEGMQKNLWPQESRTRNL 160
+ ++F +++ P+ +E ++ L PQ R R+L
Sbjct 291 FYVEFLDITVGTPSVEENM-IETKLTPQICRQRDL 324
> ath:AT3G23780 NRPD2A; NRPD2A; DNA binding / DNA-directed RNA
polymerase
Length=1172
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query 73 SFFEGKGLVSQQVESFNDFASYKLQEIIDAHPPIEIRPSPQYRPEEDVELDVRY-RLKFG 131
SFF+ GL+S Q+ S+N F + LQ + + + + PS ++D D RY +KFG
Sbjct 41 SFFDKYGLISHQLNSYNYFIEHGLQNVFQSFGEMLVEPSFDVVKKKDN--DWRYATVKFG 98
Query 132 QLSLNRPA 139
++++ +P
Sbjct 99 EVTVEKPT 106
> sce:YOR207C RET1, PDS2, RPC128, RPC2; C128 (EC:2.7.7.6); K03021
DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]
Length=1149
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 0/51 (0%)
Query 64 SEDTWAVVGSFFEGKGLVSQQVESFNDFASYKLQEIIDAHPPIEIRPSPQY 114
++D W ++ +F + KGLV Q ++SFN F L++II A+ I P++
Sbjct 41 AQDKWHLLPAFLKVKGLVKQHLDSFNYFVDTDLKKIIKANQLILSDVDPEF 91
> bbo:BBOV_III000960 17.m07112; DNA-directed RNA polymerase, beta
subunit; K03021 DNA-directed RNA polymerase III subunit
RPC2 [EC:2.7.7.6]
Length=1171
Score = 38.1 bits (87), Expect = 0.012, Method: Composition-based stats.
Identities = 21/98 (21%), Positives = 47/98 (47%), Gaps = 10/98 (10%)
Query 63 DSEDTWAVVGSFFEGKGLVSQQVESFNDFASYKLQEIIDAHPPIEIRPSPQYRPEEDVEL 122
D +D W ++ + +G+ Q + S+N+F +++EI++A PS + + +
Sbjct 35 DIKDKWKILPCYMGMRGIARQHINSYNNFVLREIKEIVNA-------PSNKMLKSDACK- 86
Query 123 DVRYRLKFGQLSLNRPAAQEKEGMQKNLWPQESRTRNL 160
++ ++F +++ P E L PQ R R++
Sbjct 87 --KFYIEFIDINVGEPTMSENNNKPILLTPQLCRMRDI 122
> cpv:cgd8_170 DNA-directed RNA polymerase beta subunit ; K03021
DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]
Length=1287
Score = 36.2 bits (82), Expect = 0.048, Method: Composition-based stats.
Identities = 24/113 (21%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query 49 QQQEDQHDEQQQEIDS-EDTWAVVGSFFEGKGLVSQQVESFNDFASYKLQEIIDAHPPIE 107
+ + D+ D+ + +++ +D W ++ F + +GLV ++S+N F + ++Q I+ A+
Sbjct 91 ESKNDKLDDLLKPVNTMKDKWRLLPYFLKTEGLVKHHIDSYNYFVTTEIQSIVRANANRM 150
Query 108 IRPSPQYRPEEDVELDVRYRLKFGQLSLNRPAAQEKEGMQKNLWPQESRTRNL 160
IR ++D + ++F + P +E + +L P R R++
Sbjct 151 IRS----------DVDPSFFIEFLDARVGMPKLEENM-ITVDLTPMMCRMRDI 192
> tpv:TP03_0746 DNA-directed RNA polymerase III subunit; K03021
DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]
Length=1244
Score = 33.9 bits (76), Expect = 0.21, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query 65 EDTWAVVGSFFEGKGLVSQQVESFNDFASYKLQEIIDAHPPIEIRPSPQYRPEEDVELDV 124
+D W ++ + +G+ Q + S+N+F +++++II+A +R +L
Sbjct 32 KDKWKILPCYMGMRGIARQHINSYNNFVLHEIKDIINAPSNKVLR----------TDLYP 81
Query 125 RYRLKFGQLSLNRPAAQEKEGMQKNLWPQESRTRNL 160
L+F + + +P + L PQ R R+
Sbjct 82 SLSLEFVDIKIGKPFFTDHSKHVFKLTPQLCRIRDF 117
> ath:AT5G45140 NRPC2; NRPC2; DNA binding / DNA-directed RNA polymerase/
ribonucleoside binding; K03021 DNA-directed RNA polymerase
III subunit RPC2 [EC:2.7.7.6]
Length=1161
Score = 33.1 bits (74), Expect = 0.37, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query 41 VGDENDELQQQEDQHDEQQQEID-----SEDTWAVVGSFFEGKGLVSQQVESFNDFASYK 95
+G + ++L D H ++++ + D + +V F + +GLV Q ++SFN F +
Sbjct 1 MGLDQEDLDLTNDDHFIDKEKLSAPIKSTADKFQLVPEFLKVRGLVKQHLDSFNYFINVG 60
Query 96 LQEIIDAHPPIEIRPSP 112
+ +I+ A+ I P
Sbjct 61 IHKIVKANSRITSTVDP 77
> xla:414609 iqcb1, MGC81507, nphp5, piq, slsn5; IQ motif containing
B1
Length=594
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query 96 LQEIIDAHPPIEIRPSPQYRPEEDVELDVRYRLKFGQLSLNRPAAQEKEGMQKNLWPQ 153
LQ+ +D+H + + P+PQ E+ EL VR + K GQ L R + E ++ L Q
Sbjct 454 LQQRLDSH--LHLHPTPQMSAEQSNELHVRAQEKLGQYLLKRSFHRGSEQRREALLAQ 509
> tpv:TP04_0556 hypothetical protein
Length=879
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query 53 DQHD------EQQQEIDSEDTWAVVGSFFEGKGLVSQQVESFNDFASYKLQEIIDAHP 104
+QHD E ++ I++ +VV S+ + L S+ ++ ND L+EI D HP
Sbjct 670 NQHDTSECEYEMRKFIETNIASSVVMSYINQRVLKSRNIDELNDIKLMLLKEIADKHP 727
> hsa:9881 TRANK1, KIAA0342, LBA1; tetratricopeptide repeat and
ankyrin repeat containing 1
Length=2925
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 3/103 (2%)
Query 59 QQEIDSEDTWAVVGSFFEGKGLVSQQVESFNDFA---SYKLQEIIDAHPPIEIRPSPQYR 115
+++I E A+V + +E KGL V +N F +YK +II + P + R
Sbjct 1549 KEKIPEELGLALVLTIYEAKGLEFDDVLLYNFFTDSEAYKEWKIISSFTPTSTDSREENR 1608
Query 116 PEEDVELDVRYRLKFGQLSLNRPAAQEKEGMQKNLWPQESRTR 158
P +V LD + L +N + G K L+ +R R
Sbjct 1609 PLVEVPLDKPGSSQGRSLMVNPEMYKLLNGELKQLYTAITRAR 1651
> hsa:27255 CNTN6, MGC133256, NB3; contactin 6; K06764 contactin
6
Length=1028
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query 110 PSPQYR-----PEEDVELDVRYRLKFGQLSLNRPAAQEKEGMQKNL 150
PSP YR + D + YRL G L++N P + GM + L
Sbjct 56 PSPHYRWKQNGTDIDFTMSYHYRLDGGSLAINSPHTDQDIGMYQCL 101
> dre:556414 si:dkey-251e24.6
Length=1343
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query 27 SDYGLAVGSNSPSRVGDENDELQQQEDQHDEQQQEIDSEDT---WAVVGSFFEG 77
SDYG A+ SR DE +L QQ Q + I SE T + + +FEG
Sbjct 966 SDYGSAIQFLVLSRCSDEAFQLAQQHGQMEVYADIIGSEATIEDYQSIALYFEG 1019
> eco:b1970 hiuH, ECK1966, JW1953, yedX; hydroxyisourate hydrolase;
K07127 5-hydroxyisourate hydrolase [EC:3.5.2.17]
Length=137
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query 115 RPEEDVELDVRYRLKFGQLSLNRPAAQEKEGMQKNLWPQESRT 157
+P DV + + + G L LN A +K+G K LWP+++ T
Sbjct 40 KPAADVTVTLEKKADNGWLQLNT-AKTDKDGRIKALWPEQTAT 81
Lambda K H
0.312 0.132 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 3712313100
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
Posted date: Sep 17, 2011 2:57 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40