bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
164,496 sequences; 82,071,388 total letters
Query= Eten_1905_orf1
Length=627
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_058210 DNA-directed RNA polymerase II subunit RPB2,... 996 0.0
cpv:cgd7_3720 RNA polymerase beta subunit ; K03010 DNA-directe... 881 0.0
bbo:BBOV_II002050 18.m06162; DNA-directed RNA polymerase, beta... 878 0.0
tpv:TP04_0340 DNA-directed RNA polymerase II subunit (EC:2.7.7... 863 0.0
ath:AT4G21710 NRPB2; NRPB2; DNA binding / DNA-directed RNA pol... 787 0.0
dre:100149268 polr2b, zgc:109952; polymerase (RNA) II (DNA dir... 759 0.0
mmu:231329 Polr2b, MGC47046, Pol2rb, Rpb140, Rpb2; polymerase ... 758 0.0
cel:C26E6.4 rpb-2; RNA Polymerase II (B) subunit family member... 758 0.0
hsa:5431 POLR2B, POL2RB, RPB2, hRPB140, hsRPB2; polymerase (RN... 758 0.0
sce:YOR151C RPB2, RPB150, RPO22, SIT2, SOH2; B150 (EC:2.7.7.6)... 753 0.0
tpv:TP03_0746 DNA-directed RNA polymerase III subunit; K03021 ... 459 2e-128
sce:YOR207C RET1, PDS2, RPC128, RPC2; C128 (EC:2.7.7.6); K0302... 457 5e-128
cel:F09F7.3 hypothetical protein; K03021 DNA-directed RNA poly... 456 1e-127
hsa:55703 POLR3B, C128, DKFZp686B10117, FLJ10388, RPC2; polyme... 456 1e-127
pfa:PFB0715w DNA-directed RNA polymerase II second largest sub... 456 1e-127
dre:562329 polr3b, si:dkey-103i16.3, wu:fc20h06; polymerase (R... 454 5e-127
mmu:70428 Polr3b, 2700078H01Rik, A330032P03Rik, C85372, RPC2; ... 453 9e-127
cpv:cgd8_170 DNA-directed RNA polymerase beta subunit ; K03021... 451 5e-126
bbo:BBOV_III000960 17.m07112; DNA-directed RNA polymerase, bet... 434 5e-121
ath:AT5G45140 NRPC2; NRPC2; DNA binding / DNA-directed RNA pol... 428 3e-119
tgo:TGME49_072740 DNA-directed RNA polymerase III subunit, put... 421 3e-117
ath:AT3G18090 NRPD2B; NRPD2b; DNA binding / DNA-directed RNA p... 420 9e-117
xla:398890 polr2b, MGC68569; polymerase (RNA) II (DNA directed... 420 1e-116
ath:AT3G23780 NRPD2A; NRPD2A; DNA binding / DNA-directed RNA p... 419 2e-116
cpv:cgd1_2770 RNA polymerase 1 beta subunit ; K03002 DNA-direc... 337 7e-92
hsa:84172 POLR1B, FLJ10816, FLJ21921, MGC131780, RPA135, RPA2,... 331 7e-90
bbo:BBOV_II001980 18.m06155; DNA-directed RNA polymerase, beta... 329 3e-89
mmu:20017 Polr1b, 128kDa, D630020H17Rik, RPA116, RPA135, RPA2,... 328 6e-89
dre:325603 polr1b, MGC113960, MGC158198, MGC192771, MGC66298, ... 325 4e-88
xla:379695 polr1b, MGC68946; polymerase (RNA) I polypeptide B,... 318 6e-86
tpv:TP04_0334 DNA-directed RNA polymerase subunit beta (EC:2.7... 316 2e-85
tgo:TGME49_097530 DNA-directed RNA polymerase I subunit RPA2, ... 314 8e-85
ath:AT1G29940 NRPA2; NRPA2; DNA binding / DNA-directed RNA pol... 301 6e-81
cel:F14B4.3 hypothetical protein; K03002 DNA-directed RNA poly... 300 9e-81
sce:YPR010C RPA135, RPA2, RRN2, SRP3; A135 (EC:2.7.7.6); K0300... 298 4e-80
pfa:PFL0330c DNA-directed RNA polymerase III subunit, putative... 283 2e-75
pfa:PF11_0358 DNA-directed RNA polymerase 1, subunit 2, putati... 208 4e-53
ath:ArthCp014 rpoB; RNA polymerase beta chain; K03043 DNA-dire... 162 3e-39
eco:b3987 rpoB, ECK3978, ftsR, groN, JW3950, mbrD?, nitB, rif,... 124 1e-27
tpv:TP05_0028 DNA-directed RNA polymerase subunit beta (EC:2.7... 77.0 2e-13
tgo:TGME49_100670 hypothetical protein 67.4 2e-10
bbo:BBOV_V000130 RNA polymerase beta subunit; K03043 DNA-direc... 63.5 3e-09
> tgo:TGME49_058210 DNA-directed RNA polymerase II subunit RPB2,
putative (EC:2.7.7.6); K03010 DNA-directed RNA polymerase
II subunit RPB2 [EC:2.7.7.6]
Length=1259
Score = 996 bits (2574), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/632 (74%), Positives = 541/632 (85%), Gaps = 10/632 (1%)
Query 3 SPESIKDRCKVFINGDWAGCFDEAETLCNTLKEIRRKGHIRNDTSIVRDIINREVKIFTD 62
+P+ IK+R KVF+NG W GCFDEA+ LC TL+++RR+ I ++TSIVRD++NREVKIFTD
Sbjct 631 TPDVIKERVKVFVNGSWVGCFDEADVLCQTLRQLRRRCDISSETSIVRDLVNREVKIFTD 690
Query 63 AGRAMRPLYVVDSDTGQLRIRKADVDKVRSMVGTSEKGAGWNHLMSCGVIEYIDCEEEET 122
AGRAMRPL+VVD T L +++ +++++ G EK W +LM G+IE++DCEEEET
Sbjct 691 AGRAMRPLFVVDEGTRDLVMKRCHLEELQRR-GKDEKS--WGYLMEKGIIEFVDCEEEET 747
Query 123 SMVAMFHKDL-SEKGKSIPYTHCEIHPSLILGVCASIIPFPDHNQSPRNVYQSAMGKQAM 181
M+AMF +D+ SEK ++ PYTHCEIHPSLILGVCASIIPFPDHNQSPRNVYQSAMGKQAM
Sbjct 748 CMIAMFVEDIRSEKRQAFPYTHCEIHPSLILGVCASIIPFPDHNQSPRNVYQSAMGKQAM 807
Query 182 GVYTTNFNLRLDTLAHLLYYPQKPLVCTRAMEHLKFRELPAGINTIVAILCYSGYNQEDS 241
GVYT++FN R+DTLAHLLYYPQKPLVCTRAME L+FRELPAGIN IVAILCYSGYNQEDS
Sbjct 808 GVYTSSFNHRMDTLAHLLYYPQKPLVCTRAMEFLRFRELPAGINAIVAILCYSGYNQEDS 867
Query 242 LIMNRNSIDRGLFRSLFCRTYCAEEKQQGSMIVEGFEQPNPETTSGMKRGDYSKLDTDGL 301
LIM+++SIDRGLFRS+F RTYC+EE+QQGS++VE FE P+ E GMKRGDYSKLD DGL
Sbjct 868 LIMSQSSIDRGLFRSVFYRTYCSEERQQGSLMVESFEPPSIEHVQGMKRGDYSKLDADGL 927
Query 302 VEPGSRVLGDDVIVGKTSPNFDDNDPLAPPGAE------ANLSKTKKDCSLCLRSSESGV 355
VEPGSRVLGDDVI+GKTSP FDD+ + + +K K+DCSLCLRSSE+GV
Sbjct 928 VEPGSRVLGDDVIIGKTSPLFDDDTGMPGGAGAGPGGVPSPFAKRKRDCSLCLRSSETGV 987
Query 356 VDTVMLSVNSKGSRFVKVKVRSVRIPQTGDKFASRHGQKGTIGITYRQEDMPFTEDGVVP 415
VD VMLSVN++GSRF KVKVRSVRIPQTGDKFASRHGQKGTIGITYR EDMPF E+G+ P
Sbjct 988 VDQVMLSVNNRGSRFTKVKVRSVRIPQTGDKFASRHGQKGTIGITYRTEDMPFNEEGITP 1047
Query 416 DLLMNPHAVPSRMTIGHLVECLLGKTAAIIGGEGDATPFNDYTVSWIAGELHRLGFERHG 475
DL+MNPHAVPSRMTIGHLVECLLGKTAAI GGEGDATPFN Y V I+ LH LG+ER G
Sbjct 1048 DLIMNPHAVPSRMTIGHLVECLLGKTAAIFGGEGDATPFNGYAVLDISNRLHSLGYERFG 1107
Query 476 NERLYHGHTGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGL 535
NERLYHGHTG H+PSLIF GPTYYQRLKHMVDDKIHARARGPV LTRQPMEGKSREGGL
Sbjct 1108 NERLYHGHTGRHLPSLIFFGPTYYQRLKHMVDDKIHARARGPVTMLTRQPMEGKSREGGL 1167
Query 536 RFGEMERDCMISHGAARMLKERFFDQSDAYRIHCCEICGTMCVADLQRLAFECKLCGNSN 595
RFGEMERDCMISHGAA MLKER F+QSDAYR+H C+ICG +C ADL R FECKLC N +
Sbjct 1168 RFGEMERDCMISHGAAHMLKERLFEQSDAYRVHVCDICGLVCTADLSRGNFECKLCDNKS 1227
Query 596 KISQVYIPYACKLLLQELTSMCIYPKLVLQVA 627
+ISQ+ IPYACKLLLQEL +MCIYP+LVLQVA
Sbjct 1228 RISQICIPYACKLLLQELMAMCIYPRLVLQVA 1259
> cpv:cgd7_3720 RNA polymerase beta subunit ; K03010 DNA-directed
RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Length=1177
Score = 881 bits (2276), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/633 (65%), Positives = 506/633 (79%), Gaps = 17/633 (2%)
Query 4 PESIKDRCKVFINGDWAGCFDEAETLCNTLKEIRRKGHIRNDTSIVRDIINREVKIFTDA 63
PE IK + KVF+NG+W GCFD++E + L+ IRR G I +TSIV D++NREVK+FTD+
Sbjct 553 PEGIKRKIKVFLNGNWVGCFDDSEDSISNLRMIRRSGEIPYETSIVLDVVNREVKLFTDS 612
Query 64 GRAMRPLYVVDSDTGQLRIRKADVDKVRS-------MVGTSEKGAGWNHLMSCGVIEYID 116
GR+MRPLY+V D G L+I+K+ ++ + + + + W+ L++ G+IEYID
Sbjct 613 GRSMRPLYIVGED-GDLKIKKSHINSLLNENPSFDEKMEDEKHDYTWDDLVNTGIIEYID 671
Query 117 CEEEETSMVAMFHKDLS-EKGKSIPYTHCEIHPSLILGVCASIIPFPDHNQSPRNVYQSA 175
CEEEETSM+AMF DL ++G YTHCEIHPSLILGVCASIIPFPDHNQSPRNVYQSA
Sbjct 672 CEEEETSMIAMFINDLRIDRGYCSTYTHCEIHPSLILGVCASIIPFPDHNQSPRNVYQSA 731
Query 176 MGKQAMGVYTTNFNLRLDTLAHLLYYPQKPLVCTRAMEHLKFRELPAGINTIVAILCYSG 235
MGKQAMGVYT+N+N+R+DTL ++LYYPQKPLV TRAM +++FRELPAGIN IV I+CYSG
Sbjct 732 MGKQAMGVYTSNYNVRMDTLGYVLYYPQKPLVTTRAMTYMRFRELPAGINCIVGIMCYSG 791
Query 236 YNQEDSLIMNRNSIDRGLFRSLFCRTYCAEEKQQGSMIVEGFEQPNPETTSGMKRGDYSK 295
YNQEDSLIMN++SIDRGLFRS+F RTY +EEKQ GS ++E FE PNPE SG++ G+Y
Sbjct 792 YNQEDSLIMNQSSIDRGLFRSVFFRTYVSEEKQVGSNLIEAFELPNPEEVSGLRFGNYGN 851
Query 296 LDTDGLVEPGSRVLGDDVIVGKTSPNFDDNDPLAPPGAEANLSK-TKKDCSLCLRSSESG 354
LD DGL+EPG+RVLGDD+I+GK P + P + + K TK+DCS+ +R+SE G
Sbjct 852 LDLDGLIEPGNRVLGDDIIIGKVGP-------INPEDRDTRIQKLTKRDCSVGIRTSEHG 904
Query 355 VVDTVMLSVNSKGSRFVKVKVRSVRIPQTGDKFASRHGQKGTIGITYRQEDMPFTEDGVV 414
VVD V+LS NSKG +F KVKVR++RIP GDKFASRHGQKGTIGITYR EDMPFT+DG++
Sbjct 905 VVDEVLLSTNSKGVKFAKVKVRTIRIPHVGDKFASRHGQKGTIGITYRTEDMPFTQDGII 964
Query 415 PDLLMNPHAVPSRMTIGHLVECLLGKTAAIIGGEGDATPFNDYTVSWIAGELHRLGFERH 474
PD++MNPHA+PSRMTIGHL+ECLLGK AI G EGDATPF TV I+ LH GF+++
Sbjct 965 PDIIMNPHAIPSRMTIGHLIECLLGKACAIQGLEGDATPFTKITVEEISSRLHSSGFQKN 1024
Query 475 GNERLYHGHTGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGG 534
GNE +Y+GHTG + S IFIGPTYYQRLKHMVDDKIHARARG V LTRQP EG++REGG
Sbjct 1025 GNEVMYNGHTGKRLESRIFIGPTYYQRLKHMVDDKIHARARGAVTMLTRQPREGRAREGG 1084
Query 535 LRFGEMERDCMISHGAARMLKERFFDQSDAYRIHCCEICGTMCVADLQRLAFECKLCGNS 594
LRFGEMERDCMISHGAA+MLKER FDQ DAYR+H CE+CG +C+ADL + FEC C N
Sbjct 1085 LRFGEMERDCMISHGAAKMLKERLFDQCDAYRVHVCEMCGLICIADLGKQHFECNACNNK 1144
Query 595 NKISQVYIPYACKLLLQELTSMCIYPKLVLQVA 627
++ISQ+ +PYACKLLLQEL +M IYP+L LQ A
Sbjct 1145 SRISQICLPYACKLLLQELMAMSIYPRLHLQTA 1177
> bbo:BBOV_II002050 18.m06162; DNA-directed RNA polymerase, beta
subunit family protein (EC:2.7.7.6); K03010 DNA-directed
RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Length=1207
Score = 878 bits (2269), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/625 (67%), Positives = 494/625 (79%), Gaps = 19/625 (3%)
Query 4 PESIKDRCKVFINGDWAGCFDEAETLCNTLKEIRRKGHIRNDTSIVRDIINREVKIFTDA 63
PE IKDR K+FING W GCFDEAE+L TL E+RR+G+I +TSIV DI+++EVKIFTDA
Sbjct 601 PEVIKDRIKIFINGTWVGCFDEAESLVKTLLELRRRGNIAAETSIVCDIVSQEVKIFTDA 660
Query 64 GRAMRPLYVVDSDTGQLRIRKADVDKVRSMVGTSEKGAGWNHLMSCGVIEYIDCEEEETS 123
GRAMRPL +V+ + L I K D+ ++ W+ L+ GV+EY+DCEEEE
Sbjct 661 GRAMRPLLIVE-NGNTLAITKTDIARL------DNNECNWDGLIESGVVEYVDCEEEEMC 713
Query 124 MVAMFHKDLSEKGKSI-PYTHCEIHPSLILGVCASIIPFPDHNQSPRNVYQSAMGKQAMG 182
M+AMF +DL YTHCEIHPS+ILGVCASIIPFPD NQSPRN YQSAMGKQAMG
Sbjct 714 MIAMFAEDLKNNSTYCNTYTHCEIHPSMILGVCASIIPFPDQNQSPRNTYQSAMGKQAMG 773
Query 183 VYTTNFNLRLDTLAHLLYYPQKPLVCTRAMEHLKFRELPAGINTIVAILCYSGYNQEDSL 242
VY TNFNLR+D L+HLLYYPQKPLVCTR+ME L+FRELPAGIN IVAI+CY+GYNQEDSL
Sbjct 774 VYATNFNLRMDPLSHLLYYPQKPLVCTRSMEFLRFRELPAGINAIVAIMCYTGYNQEDSL 833
Query 243 IMNRNSIDRGLFRSLFCRTYCAEEKQQGSMIVEGFEQPNPETTSGMKRGDYSKLDTDGLV 302
IMN++SIDRGLFRS F RTY +EEK GS +VE FE+PNP T G+KRGDY+KLD DGLV
Sbjct 834 IMNQSSIDRGLFRSAFNRTYVSEEKHVGSTVVERFERPNPATCVGLKRGDYTKLDADGLV 893
Query 303 EPGSRVLGDDVIVGKTSPNFDDNDPLAPPGAEANLSKTKKDCSLCLRSSESGVVDTVMLS 362
+PGSRVLGDDVI+G+TS D+ D ++DCS CLR+SE+GVVDTV++S
Sbjct 894 QPGSRVLGDDVIIGRTSACNDEED-----------ENLRQDCSCCLRTSENGVVDTVLIS 942
Query 363 VNSKGSRFVKVKVRSVRIPQTGDKFASRHGQKGTIGITYRQEDMPFTEDGVVPDLLMNPH 422
N+KGSRF KVKVRS+R+PQ GDKFASRHGQKGTIG+TYR ED+PFT +G+VPD++MNPH
Sbjct 943 SNAKGSRFAKVKVRSIRVPQIGDKFASRHGQKGTIGMTYRTEDLPFTCEGIVPDIIMNPH 1002
Query 423 AVPSRMTIGHLVECLLGKTAAIIGGEGDATPFNDYTVSWIAGELHRLGFERHGNERLYHG 482
AVPSRMTIGHLVECL+GK A G EGDATPF+ TV +A L G+ +HGNE L+ G
Sbjct 1003 AVPSRMTIGHLVECLVGKVGACCGMEGDATPFSKLTVQHVAERLFECGYGKHGNEALHCG 1062
Query 483 HTGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFGEMER 542
TG + S IFIGPTYYQRLKHMV+DKIHARARGPV LTRQP EG+SR+GGLRFGEMER
Sbjct 1063 FTGEMIVSKIFIGPTYYQRLKHMVEDKIHARARGPVTMLTRQPTEGRSRDGGLRFGEMER 1122
Query 543 DCMISHGAARMLKERFFDQSDAYRIHCCEICGTMCVADLQRLAFECKLCGNSNKISQVYI 602
DCMISHGAA+MLKER FDQSDA+RIH C+ CG CVADL R FEC C N ISQV I
Sbjct 1123 DCMISHGAAKMLKERLFDQSDAFRIHVCDRCGLCCVADLNRNNFECTACDNKTNISQVTI 1182
Query 603 PYACKLLLQELTSMCIYPKLVLQVA 627
PYACKLL+QEL +M IYPKL+L A
Sbjct 1183 PYACKLLIQELMAMAIYPKLLLTPA 1207
> tpv:TP04_0340 DNA-directed RNA polymerase II subunit (EC:2.7.7.6);
K03010 DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Length=1190
Score = 863 bits (2231), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/631 (65%), Positives = 502/631 (79%), Gaps = 22/631 (3%)
Query 3 SPESIKDRCKVFINGDWAGCFDEAETLCNTLKEIRRKGHIRNDTSIVRDIINREVKIFTD 62
SP IKDR K+F+NG W G F++ ++L N L E+RRKG+I ++TSIVRDI++ E+KIFTD
Sbjct 576 SPILIKDRVKIFLNGTWVGVFNQPDSLVNVLLELRRKGNISSETSIVRDIMSNEIKIFTD 635
Query 63 AGRAMRPLYVVDSDTGQLRIRKADVDKVRSMVGTSEKGAGWNHLMSCGVIEYIDCEEEET 122
AGR+MRPLY+V+++ + + AD+ + R + W+ L+ GV+EYIDCEEEE
Sbjct 636 AGRSMRPLYIVENNRLLITKKHADMIENRQLT--------WSGLLETGVVEYIDCEEEEI 687
Query 123 SMVAMFHKDLSEKGKSI-PYTHCEIHPSLILGVCASIIPFPDHNQSPRNVYQSAMGKQAM 181
M+AMF DL YTHCEIHPS+ILGVCASIIPFPD NQSPRN YQSAMGKQAM
Sbjct 688 CMIAMFPDDLVNNNNYCNSYTHCEIHPSMILGVCASIIPFPDQNQSPRNTYQSAMGKQAM 747
Query 182 GVYTTNFNLRLDTLAHLLYYPQKPLVCTRAMEHLKFRELPAGINTIVAILCYSGYNQEDS 241
GVY+TN+NLR+DTL+H+LYYPQKPLVCTR+ME L+FRELPAGIN+IVAI+CY+GYNQEDS
Sbjct 748 GVYSTNYNLRMDTLSHVLYYPQKPLVCTRSMEFLRFRELPAGINSIVAIMCYTGYNQEDS 807
Query 242 LIMNRNSIDRGLFRSLFCRTYCAEEKQQGSMIVEGFEQPNPETTSG----MKRGDYSKLD 297
LIMN++SIDRGLFRS+F RTY +EEK GS ++E F +P T SG +KRGDYSKLD
Sbjct 808 LIMNQSSIDRGLFRSVFNRTYSSEEKYLGSTVIESFTKP---TASGNFLNLKRGDYSKLD 864
Query 298 TDGLVEPGSRVLGDDVIVGKTSP-NFDDNDPLAPPGAEANLSKTKKDCSLCLRSSESGVV 356
DGLVEPGSRVLGDD+I+G++SP D N+P +E NL + DCS CLR +E+GVV
Sbjct 865 NDGLVEPGSRVLGDDIIIGRSSPVEADPNNPQYT--SEMNL---RMDCSCCLRPNENGVV 919
Query 357 DTVMLSVNSKGSRFVKVKVRSVRIPQTGDKFASRHGQKGTIGITYRQEDMPFTEDGVVPD 416
D V+L+VN+KG +F KVKVRS+R+PQ GDKFASRHGQKGTIG+T+R ED+PFT DG+VPD
Sbjct 920 DNVLLTVNNKGCKFTKVKVRSIRVPQIGDKFASRHGQKGTIGMTFRMEDLPFTCDGIVPD 979
Query 417 LLMNPHAVPSRMTIGHLVECLLGKTAAIIGGEGDATPFNDYTVSWIAGELHRLGFERHGN 476
++MNPHAVPSRMTIGHL+ECLLGK +++G EGDATPF+ T+ I+ L + + R+GN
Sbjct 980 IIMNPHAVPSRMTIGHLIECLLGKVGSLVGMEGDATPFSKMTLDQISNRLFKCRYSRYGN 1039
Query 477 ERLYHGHTGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLR 536
E ++G TG M S IF+GPTYYQRLKHMV+DKIHARARGPV LTRQP EG+SREGGLR
Sbjct 1040 EAFHNGFTGNLMASKIFVGPTYYQRLKHMVEDKIHARARGPVTMLTRQPTEGRSREGGLR 1099
Query 537 FGEMERDCMISHGAARMLKERFFDQSDAYRIHCCEICGTMCVADLQRLAFECKLCGNSNK 596
FGEMERDCMISHGAA+MLKER FDQSDAYR+H C CG + VA+L +F+C C N +
Sbjct 1100 FGEMERDCMISHGAAKMLKERLFDQSDAYRVHVCNFCGLLSVANLNNSSFQCTACDNKTQ 1159
Query 597 ISQVYIPYACKLLLQELTSMCIYPKLVLQVA 627
ISQV IPYACKLLLQEL +M IYPKL+L A
Sbjct 1160 ISQVTIPYACKLLLQELMAMAIYPKLILTEA 1190
> ath:AT4G21710 NRPB2; NRPB2; DNA binding / DNA-directed RNA polymerase;
K03010 DNA-directed RNA polymerase II subunit RPB2
[EC:2.7.7.6]
Length=1188
Score = 787 bits (2032), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/628 (59%), Positives = 478/628 (76%), Gaps = 18/628 (2%)
Query 3 SPESIKDRCKVFINGDWAGCFDEAETLCNTLKEIRRKGHIRNDTSIVRDIINREVKIFTD 62
SP I K+F+NG W G + + L TL+ +RR+ + + +VRDI +E++I+TD
Sbjct 561 SPSVIPQATKIFVNGMWVGVHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTD 620
Query 63 AGRAMRPLYVVDSDTGQLRIRKADVDKVRSMVGTSEKGAGWNHLMSCGVIEYIDCEEEET 122
GR RPL++VD+ +L I+K D+ ++ E G W+HL++ G IEYID EEEET
Sbjct 621 YGRCSRPLFIVDNQ--KLLIKKRDIYALQQRESAEEDG--WHHLVAKGFIEYIDTEEEET 676
Query 123 SMVAMFHKDL------SEKGKSIPYTHCEIHPSLILGVCASIIPFPDHNQSPRNVYQSAM 176
+M++M DL E+ + YTHCEIHPSLILGVCASIIPFPDHNQSPRN YQSAM
Sbjct 677 TMISMTISDLVQARLRPEEAYTENYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM 736
Query 177 GKQAMGVYTTNFNLRLDTLAHLLYYPQKPLVCTRAMEHLKFRELPAGINTIVAILCYSGY 236
GKQAMG+Y TN+ R+DTLA++LYYPQKPLV TRAMEHL FR+LPAGIN IVAI CYSGY
Sbjct 737 GKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGY 796
Query 237 NQEDSLIMNRNSIDRGLFRSLFCRTYCAEEKQQGSMIVEGFEQPNPETTSGMKRGDYSKL 296
NQEDS+IMN++SIDRG FRSLF R+Y EEK+ G+++ E F +P+ +T GM+ G Y KL
Sbjct 797 NQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRGSTMGMRHGSYDKL 856
Query 297 DTDGLVEPGSRVLGDDVIVGKTSPNFDDNDPLAPPGAEANLSK-TKKDCSLCLRSSESGV 355
D DGL PG+RV G+DVI+GKT+P D A+ S+ T++D S+ LR SE+G+
Sbjct 857 DDDGLAPPGTRVSGEDVIIGKTTPISQDE-------AQGQSSRYTRRDHSISLRHSETGM 909
Query 356 VDTVMLSVNSKGSRFVKVKVRSVRIPQTGDKFASRHGQKGTIGITYRQEDMPFTEDGVVP 415
VD V+L+ N+ G RFVKV+VRSVRIPQ GDKF+SRHGQKGT+G+TY QEDMP+T +GV P
Sbjct 910 VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGVTP 969
Query 416 DLLMNPHAVPSRMTIGHLVECLLGKTAAIIGGEGDATPFNDYTVSWIAGELHRLGFERHG 475
D+++NPHA+PSRMTIG L+EC++GK AA +G EGDATPF D TV I+ LH+ G++ G
Sbjct 970 DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 1029
Query 476 NERLYHGHTGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGL 535
ER+Y+GHTG + ++IF+GPTYYQRLKHMVDDKIH+R RGPV LTRQP EG+SR+GGL
Sbjct 1030 FERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 1089
Query 536 RFGEMERDCMISHGAARMLKERFFDQSDAYRIHCCEICGTMCVADLQRLAFECKLCGNSN 595
RFGEMERDCMI+HGAA LKER FDQSDAYR+H CE+CG + +A+L++ +FEC+ C N
Sbjct 1090 RFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEVCGLIAIANLKKNSFECRGCKNKT 1149
Query 596 KISQVYIPYACKLLLQELTSMCIYPKLV 623
I QVYIPYACKLL QEL SM I P+++
Sbjct 1150 DIVQVYIPYACKLLFQELMSMAIAPRML 1177
> dre:100149268 polr2b, zgc:109952; polymerase (RNA) II (DNA directed)
polypeptide B (EC:2.7.7.6); K03010 DNA-directed RNA
polymerase II subunit RPB2 [EC:2.7.7.6]
Length=1174
Score = 759 bits (1960), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/625 (58%), Positives = 463/625 (74%), Gaps = 13/625 (2%)
Query 3 SPESIKDRCKVFINGDWAGCFDEAETLCNTLKEIRRKGHI-RNDTSIVRDIINREVKIFT 61
SP +I D K+F+NG W G + E L NTL+++RR+ I ++ S++RDI RE++I+T
Sbjct 557 SPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYT 616
Query 62 DAGRAMRPLYVVDSDTGQLRIRKADVDKVRSMVGTSEKGAGWNHLMSCGVIEYIDCEEEE 121
DAGR RPL +V+ L+ R D K R S W L++ GV+EYID EEE
Sbjct 617 DAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYS-----WQDLVASGVVEYIDTLEEE 671
Query 122 TSMVAMFHKDLSEKGKSI--PYTHCEIHPSLILGVCASIIPFPDHNQSPRNVYQSAMGKQ 179
T M+AM DL EKG + YTHCEIHPS+ILGVCASIIPFPDHNQSPRN YQSAMGKQ
Sbjct 672 TVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQ 731
Query 180 AMGVYTTNFNLRLDTLAHLLYYPQKPLVCTRAMEHLKFRELPAGINTIVAILCYSGYNQE 239
AMGVY TNF++R+DTLAH+LYYPQKPLV TR+ME+L+FRELPAGIN+IVAI Y+GYNQE
Sbjct 732 AMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQE 791
Query 240 DSLIMNRNSIDRGLFRSLFCRTYCAEEKQQGSMIVEGFEQPNPETTSGMKRGDYSKLDTD 299
DS+IMNR+++DRG FRS+F R+Y +E ++G E FE+P ET GM+ Y KLD D
Sbjct 792 DSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCQGMRHAIYDKLDDD 851
Query 300 GLVEPGSRVLGDDVIVGKTSPNFDDNDPLAPPGAEANLSKTKKDCSLCLRSSESGVVDTV 359
GL+ PG RV G+DVI+GKT +++D L N TK+DCS LR+SE+G+VD V
Sbjct 852 GLIAPGVRVSGEDVIIGKTVTLPENDDEL----DSTNRRYTKRDCSTFLRTSETGIVDQV 907
Query 360 MLSVNSKGSRFVKVKVRSVRIPQTGDKFASRHGQKGTIGITYRQEDMPFTEDGVVPDLLM 419
M+++N +G +F K++VRSVRIPQ GDKFASRHGQKGT GI YRQEDMPFT +G+ PD+++
Sbjct 908 MVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIII 967
Query 420 NPHAVPSRMTIGHLVECLLGKTAAIIGGEGDATPFND-YTVSWIAGELHRLGFERHGNER 478
NPHA+PSRMT+GHL+ECL GK +A G GDATPFND V ++ L G+ GNE
Sbjct 968 NPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGYHLRGNEV 1027
Query 479 LYHGHTGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFG 538
LY+G TG + S IF+GPTYYQRLKHMVDDKIH+RARGPV L RQPMEG+SR+GGLRFG
Sbjct 1028 LYNGFTGRKLTSQIFVGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFG 1087
Query 539 EMERDCMISHGAARMLKERFFDQSDAYRIHCCEICGTMCVADLQRLAFECKLCGNSNKIS 598
EMERDC I+HGAA+ LKER F+ SD Y++H C +CG M +A+ + +EC+ C N +IS
Sbjct 1088 EMERDCQIAHGAAQFLKERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGCRNKTQIS 1147
Query 599 QVYIPYACKLLLQELTSMCIYPKLV 623
V +PYACKLL QEL SM I P+++
Sbjct 1148 LVRMPYACKLLFQELMSMSIAPRMM 1172
> mmu:231329 Polr2b, MGC47046, Pol2rb, Rpb140, Rpb2; polymerase
(RNA) II (DNA directed) polypeptide B (EC:2.7.7.6); K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Length=1174
Score = 758 bits (1957), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/625 (59%), Positives = 461/625 (73%), Gaps = 13/625 (2%)
Query 3 SPESIKDRCKVFINGDWAGCFDEAETLCNTLKEIRRKGHI-RNDTSIVRDIINREVKIFT 61
SP +I D K+F+NG W G + E L NTL+++RR+ I ++ S++RDI RE++I+T
Sbjct 557 SPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYT 616
Query 62 DAGRAMRPLYVVDSDTGQLRIRKADVDKVRSMVGTSEKGAGWNHLMSCGVIEYIDCEEEE 121
DAGR RPL +V+ L+ R D K R S W L++ GV+EYID EEE
Sbjct 617 DAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYS-----WQDLVASGVVEYIDTLEEE 671
Query 122 TSMVAMFHKDLSEKGKSI--PYTHCEIHPSLILGVCASIIPFPDHNQSPRNVYQSAMGKQ 179
T M+AM DL EK + YTHCEIHPS+ILGVCASIIPFPDHNQSPRN YQSAMGKQ
Sbjct 672 TVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQ 731
Query 180 AMGVYTTNFNLRLDTLAHLLYYPQKPLVCTRAMEHLKFRELPAGINTIVAILCYSGYNQE 239
AMGVY TNF++R+DTLAH+LYYPQKPLV TR+ME+L+FRELPAGIN+IVAI Y+GYNQE
Sbjct 732 AMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQE 791
Query 240 DSLIMNRNSIDRGLFRSLFCRTYCAEEKQQGSMIVEGFEQPNPETTSGMKRGDYSKLDTD 299
DS+IMNR+++DRG FRS+F R+Y +E ++G E FE+P ET GM+ Y KLD D
Sbjct 792 DSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYEKLDDD 851
Query 300 GLVEPGSRVLGDDVIVGKTSPNFDDNDPLAPPGAEANLSKTKKDCSLCLRSSESGVVDTV 359
GL+ PG RV GDDVI+GKT ++ D L N TK+DCS LR+SE+G+VD V
Sbjct 852 GLIAPGVRVSGDDVIIGKTVTLPENEDEL----ESTNRRYTKRDCSTFLRTSETGIVDQV 907
Query 360 MLSVNSKGSRFVKVKVRSVRIPQTGDKFASRHGQKGTIGITYRQEDMPFTEDGVVPDLLM 419
M+++N +G +F K++VRSVRIPQ GDKFASRHGQKGT GI YRQEDMPFT +G+ PD+++
Sbjct 908 MVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIII 967
Query 420 NPHAVPSRMTIGHLVECLLGKTAAIIGGEGDATPFND-YTVSWIAGELHRLGFERHGNER 478
NPHA+PSRMTIGHL+ECL GK +A G GDATPFND V I+ L G+ GNE
Sbjct 968 NPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEV 1027
Query 479 LYHGHTGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFG 538
LY+G TG + S IFIGPTYYQRLKHMVDDKIH+RARGP+ L RQPMEG+SR+GGLRFG
Sbjct 1028 LYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFG 1087
Query 539 EMERDCMISHGAARMLKERFFDQSDAYRIHCCEICGTMCVADLQRLAFECKLCGNSNKIS 598
EMERDC I+HGAA+ L+ER F+ SD Y++H C +CG M +A+ + +EC+ C N +IS
Sbjct 1088 EMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQIS 1147
Query 599 QVYIPYACKLLLQELTSMCIYPKLV 623
V +PYACKLL QEL SM I P+++
Sbjct 1148 LVRMPYACKLLFQELMSMSIAPRMM 1172
> cel:C26E6.4 rpb-2; RNA Polymerase II (B) subunit family member
(rpb-2); K03010 DNA-directed RNA polymerase II subunit RPB2
[EC:2.7.7.6]
Length=1193
Score = 758 bits (1957), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/626 (58%), Positives = 466/626 (74%), Gaps = 9/626 (1%)
Query 2 TSPESIKDRCKVFINGDWAGCFDEAETLCNTLKEIRRKGHI-RNDTSIVRDIINREVKIF 60
SP +I D K+F+NG W G E + L TLK++RR+ I ++ S+VRDI +RE++I+
Sbjct 562 VSPSAIADATKIFVNGAWVGIHREPDQLMTTLKKLRRQMDIIVSEVSMVRDIRDREIRIY 621
Query 61 TDAGRAMRPLYVVDSDTGQLRIRKADVDKVRSMVGTSEKGAGWNHLMSCGVIEYIDCEEE 120
TDAGR RPL +V++ +L ++K +D+++ + K W+ L+ GV+E ID EE
Sbjct 622 TDAGRVCRPLLIVENQ--KLALKKRHIDQLKEAADEANKYT-WSDLVGGGVVELIDSMEE 678
Query 121 ETSMVAMFHKDLSEKGKSIPYTHCEIHPSLILGVCASIIPFPDHNQSPRNVYQSAMGKQA 180
ETSM+AM +DL G +THCEIHP++ILGVCASIIPFPDHNQSPRN YQSAMGKQA
Sbjct 679 ETSMIAMMPEDLRSGGYCDTHTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQA 738
Query 181 MGVYTTNFNLRLDTLAHLLYYPQKPLVCTRAMEHLKFRELPAGINTIVAILCYSGYNQED 240
MGVYTTNF++R+DTLAH+LYYPQKPLV TR+ME+L+F ELPAGIN IVAIL YSGYNQED
Sbjct 739 MGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFNELPAGINAIVAILSYSGYNQED 798
Query 241 SLIMNRNSIDRGLFRSLFCRTYCAEEKQQGSMIVEGFEQPNPETTSGMKRGDYSKLDTDG 300
S+IMN ++IDRGLFRS+F R+Y E + E E+P E SGM+ Y KLD DG
Sbjct 799 SVIMNNSAIDRGLFRSVFYRSYRDNEANLDNANEELIEKPTREKCSGMRHSLYDKLDEDG 858
Query 301 LVEPGSRVLGDDVIVGKTSPNFDDNDPLAPPGAEANLSKTKKDCSLCLRSSESGVVDTVM 360
++ PG RV GDDVI+GKT D +D L G + K+D S LRSSE+G+VD VM
Sbjct 859 IISPGMRVSGDDVIIGKTVALPDIDDDLDASGKKY----PKRDASTFLRSSETGIVDQVM 914
Query 361 LSVNSKGSRFVKVKVRSVRIPQTGDKFASRHGQKGTIGITYRQEDMPFTEDGVVPDLLMN 420
LS+NS G++FVK+++RSVR+PQ GDKFASRHGQKGT+GI YRQEDMPFT +G+ PD+++N
Sbjct 915 LSLNSDGNKFVKIRMRSVRLPQIGDKFASRHGQKGTMGIMYRQEDMPFTAEGLTPDIIIN 974
Query 421 PHAVPSRMTIGHLVECLLGKTAAIIGGEGDATPFND-YTVSWIAGELHRLGFERHGNERL 479
PHAVPSRMTIGHL+ECL GK +A G GDATPFND V I+G L G+ GNE +
Sbjct 975 PHAVPSRMTIGHLIECLQGKLSANKGEIGDATPFNDTVNVQKISGLLCEYGYHLRGNEVM 1034
Query 480 YHGHTGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFGE 539
Y+GHTG + + IF GPTYYQRLKHMVDDKIH+RARGP+ + RQPMEG++R+GGLRFGE
Sbjct 1035 YNGHTGKKLTTQIFFGPTYYQRLKHMVDDKIHSRARGPIQMMNRQPMEGRARDGGLRFGE 1094
Query 540 MERDCMISHGAARMLKERFFDQSDAYRIHCCEICGTMCVADLQRLAFECKLCGNSNKISQ 599
MERDC ISHGA + L+ER F+ SD Y ++ C CG + VA+L+ +FECK C N ++S
Sbjct 1095 MERDCQISHGATQFLRERLFEVSDPYHVYVCNNCGLIVVANLRTNSFECKACRNKTQVSA 1154
Query 600 VYIPYACKLLLQELTSMCIYPKLVLQ 625
V IPYACKLL QEL SM I P+L+++
Sbjct 1155 VRIPYACKLLFQELMSMSIAPRLMVK 1180
> hsa:5431 POLR2B, POL2RB, RPB2, hRPB140, hsRPB2; polymerase (RNA)
II (DNA directed) polypeptide B, 140kDa (EC:2.7.7.6); K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Length=1174
Score = 758 bits (1957), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/625 (59%), Positives = 461/625 (73%), Gaps = 13/625 (2%)
Query 3 SPESIKDRCKVFINGDWAGCFDEAETLCNTLKEIRRKGHI-RNDTSIVRDIINREVKIFT 61
SP +I D K+F+NG W G + E L NTL+++RR+ I ++ S++RDI RE++I+T
Sbjct 557 SPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYT 616
Query 62 DAGRAMRPLYVVDSDTGQLRIRKADVDKVRSMVGTSEKGAGWNHLMSCGVIEYIDCEEEE 121
DAGR RPL +V+ L+ R D K R S W L++ GV+EYID EEE
Sbjct 617 DAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYS-----WQDLVASGVVEYIDTLEEE 671
Query 122 TSMVAMFHKDLSEKGKSI--PYTHCEIHPSLILGVCASIIPFPDHNQSPRNVYQSAMGKQ 179
T M+AM DL EK + YTHCEIHPS+ILGVCASIIPFPDHNQSPRN YQSAMGKQ
Sbjct 672 TVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQ 731
Query 180 AMGVYTTNFNLRLDTLAHLLYYPQKPLVCTRAMEHLKFRELPAGINTIVAILCYSGYNQE 239
AMGVY TNF++R+DTLAH+LYYPQKPLV TR+ME+L+FRELPAGIN+IVAI Y+GYNQE
Sbjct 732 AMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQE 791
Query 240 DSLIMNRNSIDRGLFRSLFCRTYCAEEKQQGSMIVEGFEQPNPETTSGMKRGDYSKLDTD 299
DS+IMNR+++DRG FRS+F R+Y +E ++G E FE+P ET GM+ Y KLD D
Sbjct 792 DSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDD 851
Query 300 GLVEPGSRVLGDDVIVGKTSPNFDDNDPLAPPGAEANLSKTKKDCSLCLRSSESGVVDTV 359
GL+ PG RV GDDVI+GKT ++ D L N TK+DCS LR+SE+G+VD V
Sbjct 852 GLIAPGVRVSGDDVIIGKTVTLPENEDEL----ESTNRRYTKRDCSTFLRTSETGIVDQV 907
Query 360 MLSVNSKGSRFVKVKVRSVRIPQTGDKFASRHGQKGTIGITYRQEDMPFTEDGVVPDLLM 419
M+++N +G +F K++VRSVRIPQ GDKFASRHGQKGT GI YRQEDMPFT +G+ PD+++
Sbjct 908 MVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIII 967
Query 420 NPHAVPSRMTIGHLVECLLGKTAAIIGGEGDATPFND-YTVSWIAGELHRLGFERHGNER 478
NPHA+PSRMTIGHL+ECL GK +A G GDATPFND V I+ L G+ GNE
Sbjct 968 NPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEV 1027
Query 479 LYHGHTGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFG 538
LY+G TG + S IFIGPTYYQRLKHMVDDKIH+RARGP+ L RQPMEG+SR+GGLRFG
Sbjct 1028 LYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFG 1087
Query 539 EMERDCMISHGAARMLKERFFDQSDAYRIHCCEICGTMCVADLQRLAFECKLCGNSNKIS 598
EMERDC I+HGAA+ L+ER F+ SD Y++H C +CG M +A+ + +EC+ C N +IS
Sbjct 1088 EMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQIS 1147
Query 599 QVYIPYACKLLLQELTSMCIYPKLV 623
V +PYACKLL QEL SM I P+++
Sbjct 1148 LVRMPYACKLLFQELMSMSIAPRMM 1172
> sce:YOR151C RPB2, RPB150, RPO22, SIT2, SOH2; B150 (EC:2.7.7.6);
K03010 DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Length=1224
Score = 753 bits (1943), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/650 (56%), Positives = 462/650 (71%), Gaps = 35/650 (5%)
Query 4 PESIKDRCKVFINGDWAGCFDEAETLCNTLKEIRRKGHIRNDTSIVRDIINREVKIFTDA 63
P D +VF+NG W G L TL+ +RRKG I + S++RDI +E+KIFTDA
Sbjct 571 PHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVSMIRDIREKELKIFTDA 630
Query 64 GRAMRPLYVVDSDTG----QLRIRKADVDKVRSMVGTSEKGA-------GWNHLMSCGVI 112
GR RPL++V+ D +L++RK + K+ + +G W+ L++ G++
Sbjct 631 GRVYRPLFIVEDDESLGHKELKVRKGHIAKLMATEYQDIEGGFEDVEEYTWSSLLNEGLV 690
Query 113 EYIDCEEEETSMVAMFHKDLS------------EKGKSI-------PYTHCEIHPSLILG 153
EYID EEEE+ ++AM +DL + K I +THCEIHPS+ILG
Sbjct 691 EYIDAEEEESILIAMQPEDLEPAEANEENDLDVDPAKRIRVSHHATTFTHCEIHPSMILG 750
Query 154 VCASIIPFPDHNQSPRNVYQSAMGKQAMGVYTTNFNLRLDTLAHLLYYPQKPLVCTRAME 213
V ASIIPFPDHNQSPRN YQSAMGKQAMGV+ TN+N+R+DT+A++LYYPQKPL TRAME
Sbjct 751 VAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRAME 810
Query 214 HLKFRELPAGINTIVAILCYSGYNQEDSLIMNRNSIDRGLFRSLFCRTYCAEEKQQGSMI 273
+LKFRELPAG N IVAI CYSGYNQEDS+IMN++SIDRGLFRSLF R+Y +EK+ G I
Sbjct 811 YLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSI 870
Query 274 VEGFEQPNPETTSGMKRGDYSKLDTDGLVEPGSRVLGDDVIVGKTSPNFDDNDPLAPPGA 333
E FE+P T MK G Y KLD DGL+ PG RV G+DVI+GKT+P D + L A
Sbjct 871 TETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTPISPDEEELGQRTA 930
Query 334 EANLSKTKKDCSLCLRSSESGVVDTVMLSVNSKGSRFVKVKVRSVRIPQTGDKFASRHGQ 393
+K+D S LRS+E+G+VD V+++ N G +FVKV+VR+ +IPQ GDKFASRHGQ
Sbjct 931 ----YHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKIPQIGDKFASRHGQ 986
Query 394 KGTIGITYRQEDMPFTEDGVVPDLLMNPHAVPSRMTIGHLVECLLGKTAAIIGGEGDATP 453
KGTIGITYR+EDMPFT +G+VPDL++NPHA+PSRMT+ HL+ECLL K AA+ G EGDA+P
Sbjct 987 KGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGDASP 1046
Query 454 FNDYTVSWIAGELHRLGFERHGNERLYHGHTGLHMPSLIFIGPTYYQRLKHMVDDKIHAR 513
F D TV I+ L G++ G E +Y+GHTG + + IF GPTYYQRL+HMVDDKIHAR
Sbjct 1047 FTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHAR 1106
Query 514 ARGPVAALTRQPMEGKSREGGLRFGEMERDCMISHGAARMLKERFFDQSDAYRIHCCEIC 573
ARGP+ LTRQP+EG+SR+GGLRFGEMERDCMI+HGAA LKER + SDA+R+H C IC
Sbjct 1107 ARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLMEASDAFRVHICGIC 1166
Query 574 GTMCV-ADLQRLAFECKLCGNSNKISQVYIPYACKLLLQELTSMCIYPKL 622
G M V A L FECK C N I Q++IPYA KLL QEL +M I P+L
Sbjct 1167 GLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMNITPRL 1216
> tpv:TP03_0746 DNA-directed RNA polymerase III subunit; K03021
DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]
Length=1244
Score = 459 bits (1181), Expect = 2e-128, Method: Compositional matrix adjust.
Identities = 259/633 (40%), Positives = 360/633 (56%), Gaps = 48/633 (7%)
Query 13 VFINGDWAGCFDEAETLCNTLKEIRRKGHIRNDTSIVRDIINREVKIFTDAGRAMRPLYV 72
V +NG G A+ L N++ ++RR+G I S+ + +V I +D GR RPL V
Sbjct 638 VLLNGILLGIHRNAKFLVNSIIKLRRRGLINMFVSVYENSQQNQVHISSDGGRLCRPLIV 697
Query 73 VDSDTGQLRIRKADVDKVRSMVGTSEKGAGWNHLMSCGVIEYIDCEEEETSMVAMFHKDL 132
V + +L + V+ +V E +L + G++E+ID EE ++ M KD+
Sbjct 698 VQNSVPRLT-----DELVQQLV---ENKIKMEYLFNNGILEWIDVNEENNLLIVMREKDI 749
Query 133 SEKGKSIPYTHCEIHPSLILGVCASIIPFPDHNQSPRNVYQSAMGKQAMGVYTTNFNLRL 192
+ TH EI P ILGV A +IPFP+HNQSPRN YQ AMGKQ++G N R
Sbjct 750 TNLT-----THLEISPMSILGVVAGLIPFPNHNQSPRNTYQCAMGKQSIGSIGYNQFQRC 804
Query 193 DTLAHLLYYPQKPLVCTRAMEHLKFRELPAGINTIVAILCYSGYNQEDSLIMNRNSIDRG 252
DT+ HL+ Y Q+PLV T+ ++ + F +LPAG N IVA++ Y GY ED++I+N+ SIDRG
Sbjct 805 DTVVHLMNYTQQPLVTTKTIQLVNFDKLPAGQNAIVAVMSYQGYEIEDAIILNKASIDRG 864
Query 253 LFRSLFCRTYCAEEKQQGSMIVEGFEQPNPETTSGMKRGDYSKLDTDGLVEPGSRVLGDD 312
R R E + + GF NP + S + + ++ G +V
Sbjct 865 FARCYTLRRLTCEITSGNATSLNGF---NPSKSQNKD----SDSNNEFVIGVGEQVSPGQ 917
Query 313 VIVGKTSP--NFDDNDPLAPPGAEANLSKTKKDCSLCLRS---SESGVVDTVMLSVNSKG 367
V++ +P +F N + G + N KT D + + G +D V+L+ N G
Sbjct 918 VLISTKAPPTDFTTNGSMNGKGTDKN-QKTGNDDKYIVNKYNLNTGGCIDRVILTENYNG 976
Query 368 SRFVKVKVRSVRIPQTGDKFASRHGQKGTIGITYRQEDMPFTEDGVVPDLLMNPHAVPSR 427
++ K+ VR R P+ GDKF+SRHGQKG +G+ EDMPFTE G+VPDL+MNPH PSR
Sbjct 977 NKMYKIMVRQSRPPEIGDKFSSRHGQKGVVGLIAEHEDMPFTESGIVPDLIMNPHGFPSR 1036
Query 428 MTIGHLVECLLGKTAAIIGGEGDATPF-NDYT--------------VSWIAGELHRLGFE 472
MT+G L+E + K++ G D+TPF N Y+ +S I L + GF
Sbjct 1037 MTVGKLLELVASKSSVFSGNFVDSTPFSNSYSDNLCNDLNNSGSNKMSDICDILIKNGFH 1096
Query 473 RHGNERLYHGHTGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSRE 532
G E LY G +G + +LIFIGP YYQRLKHMV DKIHAR RGP +TRQP EG+SR+
Sbjct 1097 PKGKEILYSGISGNPINTLIFIGPIYYQRLKHMVTDKIHARGRGPRQPITRQPTEGRSRD 1156
Query 533 GGLRFGEMERDCMISHGAARMLKERFFDQSDAYRIHCCEICGTMCVADLQRLAFECKLCG 592
GGLR GEMERDC+I++G++ +L ER SD + I C CG M + CK C
Sbjct 1157 GGLRLGEMERDCLIAYGSSNLLVERLMLSSDVFNIEVCSSCGFMGYNNF------CKFCQ 1210
Query 593 NSNKISQVYIPYACKLLLQELTSMCIYPKLVLQ 625
N N ++QV +PYACKLL QEL +M I P L+++
Sbjct 1211 N-NSLAQVSLPYACKLLFQELQAMNIRPSLIVK 1242
> sce:YOR207C RET1, PDS2, RPC128, RPC2; C128 (EC:2.7.7.6); K03021
DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]
Length=1149
Score = 457 bits (1176), Expect = 5e-128, Method: Compositional matrix adjust.
Identities = 248/621 (39%), Positives = 354/621 (57%), Gaps = 39/621 (6%)
Query 13 VFINGDWAGCFDEAETLCNTLKEIRRKGHIRNDTSIVRDIINREVKIFTDAGRAMRPLYV 72
V++NG G + +RR G + SI + V I TD GR RPL +
Sbjct 555 VYLNGTLIGSIRFPTKFVTQFRHLRRTGKVSEFISIYSNSHQMAVHIATDGGRICRPLII 614
Query 73 VDSDTGQLRIRKADVDKVRSMVGTSEKGAGWNHLMSCGVIEYIDCEEEETSMVAMFHKDL 132
V GQ R++ + K+ + ++ + G++EY+D EE S +A++ KD+
Sbjct 615 VSD--GQSRVKDIHLRKLL------DGELDFDDFLKLGLVEYLDVNEENDSYIALYEKDI 666
Query 133 SEKGKSIP-YTHCEIHPSLILGVCASIIPFPDHNQSPRNVYQSAMGKQAMGVYTTNFNLR 191
+P TH EI P ILG A +IP+P HNQSPRN YQ AMGKQA+G N R
Sbjct 667 ------VPSMTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKR 720
Query 192 LDTLAHLLYYPQKPLVCTRAMEHLKFRELPAGINTIVAILCYSGYNQEDSLIMNRNSIDR 251
+DTL +L+ YPQ+P+V T+ +E + + +LPAG N VA++ YSGY+ ED+L++N++SIDR
Sbjct 721 IDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDR 780
Query 252 GLFRSLFCRTYCAEEKQQGSMIVEGFEQPNPETTSGMK---RGD----YSKLDTDGLVEP 304
G R E +++ + +++ + + GM+ GD + L DGL E
Sbjct 781 GFGR--------CETRRKTTTVLKRYANHTQDIIGGMRVDENGDPIWQHQSLGPDGLGEV 832
Query 305 GSRVLGDDVIVGKTSPNFDDNDPLAPPGAEANLSKTKKDCSLCLRSSESGVVDTVMLSVN 364
G +V + + K+ P N AP N+ ++ + R E +D VM+SV+
Sbjct 833 GMKVQSGQIYINKSVPT---NSADAPNPNNVNVQTQYREAPVIYRGPEPSHIDQVMMSVS 889
Query 365 SKGSRFVKVKVRSVRIPQTGDKFASRHGQKGTIGITYRQEDMPFTEDGVVPDLLMNPHAV 424
+KV +R R P+ GDKF+SRHGQKG GI +QEDMPF + G+VPD++MNPH
Sbjct 890 DNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGIVPDIIMNPHGF 949
Query 425 PSRMTIGHLVECLLGKTAAIIGGEGDATPFNDYTVSWIAGELHRLGFERHGNERLYHGHT 484
PSRMT+G ++E + GK + G T F + ++ L GF G + LY G T
Sbjct 950 PSRMTVGKMIELISGKAGVLNGTLEYGTCFGGSKLEDMSKILVDQGFNYSGKDMLYSGIT 1009
Query 485 GLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFGEMERDC 544
G + + IF GP YYQ+LKHMV DK+HARARGP A LTRQP EG+SR+GGLR GEMERDC
Sbjct 1010 GECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDC 1069
Query 545 MISHGAARMLKERFFDQSDAYRIHCCEICGTMCVADLQRLAFECKLCGNSNKISQVYIPY 604
+I++GA+++L ER SDA+ + C+ CG M + C C ++ I ++ IPY
Sbjct 1070 VIAYGASQLLLERLMISSDAFEVDVCDKCGLMGYSGW------CTTCKSAENIIKMTIPY 1123
Query 605 ACKLLLQELTSMCIYPKLVLQ 625
A KLL QEL SM I P+L L+
Sbjct 1124 AAKLLFQELLSMNIAPRLRLE 1144
> cel:F09F7.3 hypothetical protein; K03021 DNA-directed RNA polymerase
III subunit RPC2 [EC:2.7.7.6]
Length=1154
Score = 456 bits (1174), Expect = 1e-127, Method: Compositional matrix adjust.
Identities = 244/620 (39%), Positives = 356/620 (57%), Gaps = 30/620 (4%)
Query 13 VFINGDWAGCFDEAETLCNTLKEIRRKGHIRNDTSIVRDIINREVKIFTDAGRAMRPLYV 72
+F+NG G + E + ++++RR G + S+ R + NR V I +D GR RP +
Sbjct 552 IFLNGVLIGTAVDPERVVKAVRDLRRSGLLSEFVSVSRSLTNRSVFISSDGGRLCRPYII 611
Query 73 VDSDTGQLRIRKADVDKVRSMVGTSEKGAGWNHLMSCGVIEYIDCEEEETSMVAMFHKDL 132
V + T L +A V +++ E + + G++EY+D E +++A++ +++
Sbjct 612 VKNGTPMLT--QAHVQELK------EGKMIFEDFVDDGIVEYLDVNEMNDALIAVYGREI 663
Query 133 SEKGKSIPYTHCEIHPSLILGVCASIIPFPDHNQSPRNVYQSAMGKQAMGVYTTNFNLRL 192
+ TH EI P +LGVCA +IP+P HNQSPRN YQ AMGKQAMG N R+
Sbjct 664 GPET-----THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIAYNQQKRI 718
Query 193 DTLAHLLYYPQKPLVCTRAMEHLKFRELPAGINTIVAILCYSGYNQEDSLIMNRNSIDRG 252
D++ +LL YPQ+PLV ++ +E F +LPAG N I+A++ YSGY+ ED+L++N+ S+DRG
Sbjct 719 DSIMYLLCYPQRPLVKSKTIELTNFEKLPAGANGIIAVMSYSGYDIEDALVLNKASLDRG 778
Query 253 LFRSLFCRTYCAEEKQQGSMIVEGFEQPNPETTSGMKRGDYSKLDTDGLVEPGSRVLGDD 312
R L + K+ + + P + + + LD +G+V G+R++
Sbjct 779 YGRCLVYKHVKGTAKKYPNQTFDRLLGPALDPNTRKPIFKHKNLDQEGIVFAGARIMPKQ 838
Query 313 VIVGKTSPNFDDNDPLAPPGAEANLSKTK--------KDCSLCLRSSESGVVDTVMLSVN 364
I+ K P + PGA A+ + KD S+ ++ + V+L+ N
Sbjct 839 TIINKHMPVVSGE---SGPGASASANTIGIAGRQVDYKDVSITYKTPTPSYAERVLLTYN 895
Query 365 SKGSRFVKVKVRSVRIPQTGDKFASRHGQKGTIGITYRQEDMPFTEDGVVPDLLMNPHAV 424
+ KV +R R P+ GDKF+SRHGQKG G+ +QEDMPF + G+VPD++MNPH
Sbjct 896 EDEAHLFKVLLRQTRRPELGDKFSSRHGQKGVCGLIAQQEDMPFNDLGMVPDMIMNPHGY 955
Query 425 PSRMTIGHLVECLLGKTAAIIGGEGDATPFNDYTVSWIAGELHRLGFERHGNERLYHGHT 484
PSRMT+G L+E L GK + G T F V + EL G+ G + L G T
Sbjct 956 PSRMTVGKLMELLSGKAGVVNGTYHYGTAFGGDQVKDVCEELAACGYNYMGKDMLTSGIT 1015
Query 485 GLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFGEMERDC 544
G + + I+ GP YYQ+LKHMV DK+HARARGP AALTRQP EG+SREGGLR GEMERDC
Sbjct 1016 GQPLSAYIYFGPIYYQKLKHMVLDKMHARARGPRAALTRQPTEGRSREGGLRLGEMERDC 1075
Query 545 MISHGAARMLKERFFDQSDAYRIHCCEICGTMCVADLQRLAFECKLCGNSNKISQVYIPY 604
+I++GA+ +L ER SD +++ C CG + C+ C +S ++ + IPY
Sbjct 1076 LIAYGASMLLIERLMVSSDEFKVDVCTGCGVIGSKGW------CQKCRSSKSMANIKIPY 1129
Query 605 ACKLLLQELTSMCIYPKLVL 624
ACKLL QEL SM I P+L L
Sbjct 1130 ACKLLFQELQSMNIVPRLDL 1149
> hsa:55703 POLR3B, C128, DKFZp686B10117, FLJ10388, RPC2; polymerase
(RNA) III (DNA directed) polypeptide B (EC:2.7.7.6);
K03021 DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]
Length=1075
Score = 456 bits (1173), Expect = 1e-127, Method: Compositional matrix adjust.
Identities = 246/612 (40%), Positives = 350/612 (57%), Gaps = 22/612 (3%)
Query 13 VFINGDWAGCFDEAETLCNTLKEIRRKGHIRNDTSIVRDIINREVKIFTDAGRAMRPLYV 72
VF+NG+ G + + L NT + +RR G+I SI ++ +R V I +D GR RP +
Sbjct 481 VFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYII 540
Query 73 VDSDTGQLRIRKADVDKVRSMVGTSEKGAGWNHLMSCGVIEYIDCEEEETSMVAMFHKDL 132
V + A +K M ++ + + ++EY+D EE +A++ +
Sbjct 541 VKKQ------KPAVTNK--HMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTI 592
Query 133 SEKGKSIPYTHCEIHPSLILGVCASIIPFPDHNQSPRNVYQSAMGKQAMGVYTTNFNLRL 192
++ TH EI P +LGVCA +IP+P HNQSPRN YQ AMGKQAMG N R+
Sbjct 593 NKDT-----THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRI 647
Query 193 DTLAHLLYYPQKPLVCTRAMEHLKFRELPAGINTIVAILCYSGYNQEDSLIMNRNSIDRG 252
DTL +LL YPQKP+V T+ +E ++F +LPAG N VA++ YSGY+ ED+L++N+ S+DRG
Sbjct 648 DTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRG 707
Query 253 LFRSLFCRTYCAEEKQQGSMIVEGFEQPNPETTSGMKRGDYSKLDTDGLVEPGSRVLGDD 312
R L + K+ + + P + + + LD DG+ PG +V
Sbjct 708 FGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQ 767
Query 313 VIVGKTSPNFDDNDPLAPPGAEANLSKTKKDCSLCLRSSESGVVDTVMLSVNSKGSRFVK 372
V+V K+ P PL G+ KD + + + ++ VM+S N++ + +K
Sbjct 768 VLVNKSMPTVT-QIPLE--GSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIK 824
Query 373 VKVRSVRIPQTGDKFASRHGQKGTIGITYRQEDMPFTEDGVVPDLLMNPHAVPSRMTIGH 432
+ +R R P+ GDKF+SRHGQKG G+ QEDMPF + G+ PD++MNPH PSRMT+G
Sbjct 825 MLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGK 884
Query 433 LVECLLGKTAAIIGGEGDATPFNDYTVSWIAGELHRLGFERHGNERLYHGHTGLHMPSLI 492
L+E L GK + G T F V + +L R G+ G + + G TG + + I
Sbjct 885 LIELLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYI 944
Query 493 FIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFGEMERDCMISHGAAR 552
+ GP YYQ+LKHMV DK+HARARGP A LTRQP EG+SR+GGLR GEMERDC+I +GA+
Sbjct 945 YFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASM 1004
Query 553 MLKERFFDQSDAYRIHCCEICGTMCVADLQRLAFECKLCGNSNKISQVYIPYACKLLLQE 612
+L ER SDA+ + C CG + + C C +S +S + IPYACKLL QE
Sbjct 1005 LLLERLMISSDAFEVDVCGQCGLLGYSGW------CHYCKSSCHVSSLRIPYACKLLFQE 1058
Query 613 LTSMCIYPKLVL 624
L SM I P+L L
Sbjct 1059 LQSMNIIPRLKL 1070
> pfa:PFB0715w DNA-directed RNA polymerase II second largest subunit,
putative; K03010 DNA-directed RNA polymerase II subunit
RPB2 [EC:2.7.7.6]
Length=1340
Score = 456 bits (1173), Expect = 1e-127, Method: Compositional matrix adjust.
Identities = 205/289 (70%), Positives = 246/289 (85%), Gaps = 0/289 (0%)
Query 337 LSKTKKDCSLCLRSSESGVVDTVMLSVNSKGSRFVKVKVRSVRIPQTGDKFASRHGQKGT 396
L + KKDCSL LRS+E+GV+DTVMLS NS+G++F KVKVRSVRIPQ GDKFASRHGQKGT
Sbjct 1050 LKQYKKDCSLSLRSNENGVIDTVMLSSNSRGNKFAKVKVRSVRIPQIGDKFASRHGQKGT 1109
Query 397 IGITYRQEDMPFTEDGVVPDLLMNPHAVPSRMTIGHLVECLLGKTAAIIGGEGDATPFND 456
IGITYR EDMPF+ G+ PD++MNPHAVPSRMTIGHLVECL GK AAI GGEGDATPF+
Sbjct 1110 IGITYRTEDMPFSSLGIFPDIIMNPHAVPSRMTIGHLVECLTGKVAAIEGGEGDATPFSK 1169
Query 457 YTVSWIAGELHRLGFERHGNERLYHGHTGLHMPSLIFIGPTYYQRLKHMVDDKIHARARG 516
TV I+ +LH LG+E++GNE LY+GH G + S IFIGPTYYQRLKHMV+DKIHAR+RG
Sbjct 1170 ITVQEISQKLHNLGYEKYGNEMLYNGHNGRMLKSKIFIGPTYYQRLKHMVEDKIHARSRG 1229
Query 517 PVAALTRQPMEGKSREGGLRFGEMERDCMISHGAARMLKERFFDQSDAYRIHCCEICGTM 576
P+ +TRQP EG+SR+GGLRFGEMERDCMISHG+A+MLKER F++SDAYR+H C+ CG
Sbjct 1230 PLTMITRQPTEGRSRDGGLRFGEMERDCMISHGSAKMLKERLFEESDAYRVHVCDNCGLC 1289
Query 577 CVADLQRLAFECKLCGNSNKISQVYIPYACKLLLQELTSMCIYPKLVLQ 625
C+AD+ + A+EC +C + ISQ+Y+PYACKLL QEL +M IYPKLVL+
Sbjct 1290 CIADINKNAYECTVCNSKTNISQIYLPYACKLLFQELMTMAIYPKLVLE 1338
Score = 443 bits (1139), Expect = 1e-123, Method: Compositional matrix adjust.
Identities = 206/321 (64%), Positives = 257/321 (80%), Gaps = 7/321 (2%)
Query 4 PESIKDRCKVFINGDWAGCFDEAETLCNTLKEIRRKGHIRNDTSIVRDIINREVKIFTDA 63
PE +K++ K+F+NG W GCF++ + L TL E+RR+ I + SIVRD+ ++E+KIFTD+
Sbjct 577 PELMKEKVKLFLNGKWVGCFNQIDNLIETLYELRRRCDISPEASIVRDVNSKEIKIFTDS 636
Query 64 GRAMRPLYVVDSDTGQ--LRIRKADVDKVRSMVGTSEKGAGWNHLMSCGVIEYIDCEEEE 121
GRAMRPLYVV + G+ L++ K V+ + T W++L+ G+IEYIDCEEEE
Sbjct 637 GRAMRPLYVVKNVNGENKLKLTKEHVNNIEKYPET----YNWDYLIQEGIIEYIDCEEEE 692
Query 122 TSMVAMFHKDL-SEKGKSIPYTHCEIHPSLILGVCASIIPFPDHNQSPRNVYQSAMGKQA 180
T+M++MF DL + G +THCEIHPSLILGVCASIIPF DHNQSPRN YQSAMGKQA
Sbjct 693 TTMISMFIDDLKTGTGYYNNFTHCEIHPSLILGVCASIIPFSDHNQSPRNTYQSAMGKQA 752
Query 181 MGVYTTNFNLRLDTLAHLLYYPQKPLVCTRAMEHLKFRELPAGINTIVAILCYSGYNQED 240
MG+Y TNFN+RLDTLAHLLYYPQKPLVCT+ ME+L+FRELPAGIN IVAI+CY+GYNQED
Sbjct 753 MGIYVTNFNIRLDTLAHLLYYPQKPLVCTKVMEYLRFRELPAGINAIVAIMCYTGYNQED 812
Query 241 SLIMNRNSIDRGLFRSLFCRTYCAEEKQQGSMIVEGFEQPNPETTSGMKRGDYSKLDTDG 300
SLIMN++SIDRGLFRS+F RTY +EEKQQGS+I+E FE+P+ +KRGDY+KLD DG
Sbjct 813 SLIMNQSSIDRGLFRSVFYRTYTSEEKQQGSLIIESFEKPSVRVVKNLKRGDYTKLDDDG 872
Query 301 LVEPGSRVLGDDVIVGKTSPN 321
L+ PG RVLGDD+I+GK SPN
Sbjct 873 LIAPGIRVLGDDIIIGKVSPN 893
> dre:562329 polr3b, si:dkey-103i16.3, wu:fc20h06; polymerase
(RNA) III (DNA directed) polypeptide B; K03021 DNA-directed
RNA polymerase III subunit RPC2 [EC:2.7.7.6]
Length=1140
Score = 454 bits (1168), Expect = 5e-127, Method: Compositional matrix adjust.
Identities = 246/619 (39%), Positives = 354/619 (57%), Gaps = 26/619 (4%)
Query 13 VFINGDWAGCFDEAETLCNTLKEIRRKGHIRNDTSIVRDIINREVKIFTDAGRAMRPLYV 72
VF+NG+ G + + L T + +RR G I SI ++ +R V I +D GR RP +
Sbjct 536 VFLNGNILGVIRDHQKLVYTFRLMRRAGFINEFVSISTNLTDRCVYISSDGGRLCRPYII 595
Query 73 VDSDTGQLRIRKADVDKVRSMVGTSEKGAGWNHLMSCGVIEYIDCEEEETSMVAMFHKDL 132
V + G+ ++ ++++ T E + ++EY+D EE +A++ +
Sbjct 596 VKN--GKPAVKNKHIEELSQGYRTFED------FLHESLVEYLDVNEENDCNIALYEHMI 647
Query 133 SEKGKSIPYTHCEIHPSLILGVCASIIPFPDHNQSPRNVYQSAMGKQAMGVYTTNFNLRL 192
S+ TH EI P +LGVCA +IP+P HNQSPRN YQ AMGKQAMG N R+
Sbjct 648 SKDT-----THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRI 702
Query 193 DTLAHLLYYPQKPLVCTRAMEHLKFRELPAGINTIVAILCYSGYNQEDSLIMNRNSIDRG 252
DTL +LL YPQ+P+V T+ +E + F +LPAG N VA++ YSGY+ ED+L++N+ S+DRG
Sbjct 703 DTLMYLLAYPQRPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRG 762
Query 253 LFRSLFCRTYCAEEKQQGSMIVEGFEQPNPETTSGMKRGDYSKLDTDGLVEPGSRVLGDD 312
R L + ++ + + P + + +S LD DG+ PG +V
Sbjct 763 FGRCLVYKNAKCTLRRYTNQTFDKVMGPMLDAETRKPIWRHSILDADGICSPGEKVENKQ 822
Query 313 VIVGKTSPNFDDNDPL---APPGAEANLSKTKKDCSLCLRSSESGVVDTVMLSVNSKGSR 369
V+V K+ P PL A PG ++ + + + ++ VM+S N++ +
Sbjct 823 VLVNKSMPTVTQT-PLEGSAQPG-----QPQYREVPVSYKGATDSYIEKVMISSNAEDAF 876
Query 370 FVKVKVRSVRIPQTGDKFASRHGQKGTIGITYRQEDMPFTEDGVVPDLLMNPHAVPSRMT 429
VK+ +R R P+ GDKF+SRHGQKG G+ QEDMPF + G+ PD++MNPH PSRMT
Sbjct 877 LVKILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGYPSRMT 936
Query 430 IGHLVECLLGKTAAIIGGEGDATPFNDYTVSWIAGELHRLGFERHGNERLYHGHTGLHMP 489
+G L+E L GK + G T F V + +L R G+ G + + G TG +
Sbjct 937 VGKLIELLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLIRYGYNYQGKDYVTSGITGEPLE 996
Query 490 SLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFGEMERDCMISHG 549
+ I+ GP YYQ+LKHMV DK+HARARGP A LTRQP EG+SR+GGLR GEMERDC+I +G
Sbjct 997 AYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYG 1056
Query 550 AARMLKERFFDQSDAYRIHCCEICGTMCVADL----QRLAFECKLCGNSNKISQVYIPYA 605
A+ +L ER SDA+ + C CG + + + +C C +S +S + IPYA
Sbjct 1057 ASMLLLERLMISSDAFEVDVCGQCGLLGYSGWSVQSSTILQQCHYCKSSCHVSSLRIPYA 1116
Query 606 CKLLLQELTSMCIYPKLVL 624
CKLL QEL SM I P+L L
Sbjct 1117 CKLLFQELQSMNIIPRLKL 1135
> mmu:70428 Polr3b, 2700078H01Rik, A330032P03Rik, C85372, RPC2;
polymerase (RNA) III (DNA directed) polypeptide B (EC:2.7.7.6);
K03021 DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]
Length=1133
Score = 453 bits (1165), Expect = 9e-127, Method: Compositional matrix adjust.
Identities = 245/612 (40%), Positives = 349/612 (57%), Gaps = 22/612 (3%)
Query 13 VFINGDWAGCFDEAETLCNTLKEIRRKGHIRNDTSIVRDIINREVKIFTDAGRAMRPLYV 72
VF+NG+ G + + L +T + +RR G+I SI ++ +R V I +D GR RP +
Sbjct 539 VFLNGNILGVIRDHKKLVSTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYII 598
Query 73 VDSDTGQLRIRKADVDKVRSMVGTSEKGAGWNHLMSCGVIEYIDCEEEETSMVAMFHKDL 132
V +K V + M ++ + + ++EY+D EE +A++ +
Sbjct 599 VKK-------QKPAVTN-KHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTI 650
Query 133 SEKGKSIPYTHCEIHPSLILGVCASIIPFPDHNQSPRNVYQSAMGKQAMGVYTTNFNLRL 192
++ TH EI P +LGVCA +IP+P HNQSPRN YQ AMGKQAMG N R+
Sbjct 651 NKDT-----THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRI 705
Query 193 DTLAHLLYYPQKPLVCTRAMEHLKFRELPAGINTIVAILCYSGYNQEDSLIMNRNSIDRG 252
DTL +LL YPQKP+V T+ +E + F +LPAG N VA++ YSGY+ ED+L++N+ S+DRG
Sbjct 706 DTLMYLLAYPQKPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRG 765
Query 253 LFRSLFCRTYCAEEKQQGSMIVEGFEQPNPETTSGMKRGDYSKLDTDGLVEPGSRVLGDD 312
R L + K+ + + P + + + LD DG+ PG +V
Sbjct 766 FGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQ 825
Query 313 VIVGKTSPNFDDNDPLAPPGAEANLSKTKKDCSLCLRSSESGVVDTVMLSVNSKGSRFVK 372
V+V K+ P PL G+ KD + + + ++ VM+S N++ + +K
Sbjct 826 VLVNKSMPTVT-QIPLE--GSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIK 882
Query 373 VKVRSVRIPQTGDKFASRHGQKGTIGITYRQEDMPFTEDGVVPDLLMNPHAVPSRMTIGH 432
+ +R R P+ GDKF+SRHGQKG G+ QEDMPF + G+ PD++MNPH PSRMT+G
Sbjct 883 MLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGK 942
Query 433 LVECLLGKTAAIIGGEGDATPFNDYTVSWIAGELHRLGFERHGNERLYHGHTGLHMPSLI 492
L+E L GK + G T F V + +L R G+ G + + G TG + + I
Sbjct 943 LIELLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYI 1002
Query 493 FIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFGEMERDCMISHGAAR 552
+ GP YYQ+LKHMV DK+HARARGP A LTRQP EG+SR+GGLR GEMERDC+I +GA+
Sbjct 1003 YFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASM 1062
Query 553 MLKERFFDQSDAYRIHCCEICGTMCVADLQRLAFECKLCGNSNKISQVYIPYACKLLLQE 612
+L ER SDA+ + C CG + + C C +S +S + IPYACKLL QE
Sbjct 1063 LLLERLMISSDAFEVDVCGQCGLLGYSGW------CHYCKSSCHVSSLRIPYACKLLFQE 1116
Query 613 LTSMCIYPKLVL 624
L SM I P+L L
Sbjct 1117 LQSMNIIPRLKL 1128
> cpv:cgd8_170 DNA-directed RNA polymerase beta subunit ; K03021
DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]
Length=1287
Score = 451 bits (1159), Expect = 5e-126, Method: Compositional matrix adjust.
Identities = 249/627 (39%), Positives = 367/627 (58%), Gaps = 27/627 (4%)
Query 1 STSPESIKDRCKVFINGDWAGCFDEAETLCNTLKEIRRKGHIRNDTSIVRDIINREVKIF 60
S+ ++K V ING G + E L + L+ +RRKG I SI + I+ V+I
Sbjct 678 SSGKNNVKKHYYVSINGSLLGVHRKPELLASQLRNLRRKGFIGQFVSIFCNHIHSSVQIA 737
Query 61 TDAGRAMRPLYVVDSDTGQLRIRKADVDKVRSMVGTSEKGAGWNHLMSCGVIEYIDCEEE 120
TD GR RPL +VD G R+++ +++++ ++ +S G++E+ID EE
Sbjct 738 TDGGRLCRPLIIVDQ--GVPRLKEEHIEQLK------RGEIIFSDFISQGILEWIDVNEE 789
Query 121 ETSMVAMFHKDLSEKGKSIPYTHCEIHPSLILGVCASIIPFPDHNQSPRNVYQSAMGKQA 180
++A+ ++L+ + TH EI P ILGV + +IP+P+HNQSPRN YQ AMGKQ
Sbjct 790 NNLLIALRDENLTNET-----THLEIDPLSILGVVSGLIPYPNHNQSPRNTYQCAMGKQV 844
Query 181 MGVYTTNFNLRLDTLAHLLYYPQKPLVCTRAMEHLKFRELPAGINTIVAILCYSGYNQED 240
MG N LR D++ +LL YPQKPL TR +E + F +LPAG N+ VA++ ++GY+ ED
Sbjct 845 MGSVGFNQFLRCDSVLYLLVYPQKPLCKTRTIEMINFEQLPAGQNSSVAVMSFAGYDIED 904
Query 241 SLIMNRNSIDRGLFRSLFCRTYCAEEKQQGSMIVEGFEQPNP--ETTSGMKRGDY---SK 295
+++MN+ S+DRG R + E ++ + + E +P +G +R + S
Sbjct 905 AIVMNKASVDRGFARCFVMKRQTIELQKLPNGLSERVVRPISVGSGNTGNRRFSFKNDSI 964
Query 296 LDTDGLVEPGSRVLGDDVIVGKTSPNFDDNDPLAPPGAEANLSKTKKDCSLCLRSSESGV 355
LD DG+ G +V DD+IV K SP + + + P ++ +LS+ K + + S
Sbjct 965 LDNDGVCNVGVQVSEDDIIVNKMSP-INTREYVGDP-SQFDLSEYKP-SPVKYKGPTSSY 1021
Query 356 VDTVMLSVNSKGSRFVKVKVRSVRIPQTGDKFASRHGQKGTIGITYRQEDMPFTEDGVVP 415
+D V+L+ N+ G++ KV R R P+ GDKF+SRHGQKG +G+ QED+PF+E G P
Sbjct 1022 IDRVILTENADGNQIYKVITRQTRRPELGDKFSSRHGQKGVVGLIISQEDLPFSETGWCP 1081
Query 416 DLLMNPHAVPSRMTIGHLVECLLGKTAAIIGGEGDATPFNDYTVSWIAGELHRLGFERHG 475
DL+MNPH PSRMT+G L+E + K + + G T F + A L GF G
Sbjct 1082 DLIMNPHGFPSRMTVGKLLELISSKASVLDGNYRYGTAFGGTPLEESAKCLVEHGFHYSG 1141
Query 476 NERLYHGHTGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGL 535
E L G TG + + IF+GP YYQ+LKHMV DK+HAR RGP LTRQP EG+S++GGL
Sbjct 1142 KEYLTSGTTGEAIEAYIFVGPIYYQKLKHMVLDKMHARGRGPRQILTRQPTEGRSKDGGL 1201
Query 536 RFGEMERDCMISHGAARMLKERFFDQSDAYRIHCCEICGTMCVADLQRLAFECKLCGNSN 595
R GEMERDC++++GA+ +L ER SD + + C CG + C C +S
Sbjct 1202 RLGEMERDCLVAYGASNLLIERLMLNSDVFETNVCNQCGLFGYNNY------CHYCKSSQ 1255
Query 596 KISQVYIPYACKLLLQELTSMCIYPKL 622
+S + +PYACKLL QEL +M + P++
Sbjct 1256 DVSIIRLPYACKLLFQELQAMNVCPRI 1282
> bbo:BBOV_III000960 17.m07112; DNA-directed RNA polymerase, beta
subunit; K03021 DNA-directed RNA polymerase III subunit
RPC2 [EC:2.7.7.6]
Length=1171
Score = 434 bits (1116), Expect = 5e-121, Method: Compositional matrix adjust.
Identities = 246/614 (40%), Positives = 343/614 (55%), Gaps = 38/614 (6%)
Query 13 VFINGDWAGCFDEAETLCNTLKEIRRKGHIRNDTSIVRDIINREVKIFTDAGRAMRPLYV 72
VF+NG G + L + +RR+G I S+ + REV I +D GR RPL V
Sbjct 590 VFLNGIIIGVHQNGKQLIKDVVALRRRGKISAFVSVFENYQQREVHISSDGGRLCRPLIV 649
Query 73 VDSDTGQLRIRKADVDKVRSMVGTSEKGAGWNHLMSCGVIEYIDCEEEETSMVAMFHKDL 132
V++ L KV S + E + L + GV+E+ID EE +++ M D+
Sbjct 650 VENGKPLL------TPKVLSQL--VEGQIPLSKLFASGVLEWIDVNEENNTLIVMRESDI 701
Query 133 SEKGKSIPYTHCEIHPSLILGVCASIIPFPDHNQSPRNVYQSAMGKQAMGVYTTNFNLRL 192
+ K TH EI P +LGV A +IPFP+HNQSPRN YQ AMGKQ++G N R
Sbjct 702 TPKT-----THLEISPMSMLGVVAGLIPFPNHNQSPRNTYQCAMGKQSIGSIGYNQLNRC 756
Query 193 DTLAHLLYYPQKPLVCTRAMEHLKFRELPAGINTIVAILCYSGYNQEDSLIMNRNSIDRG 252
DT+ HL+ YPQ+PLV T+A++ + F +LPAG N IVA++ Y GY ED++++N+ S +RG
Sbjct 757 DTILHLMVYPQRPLVTTKAIQLVNFDKLPAGQNVIVAVMSYQGYEIEDAVVINKASSERG 816
Query 253 LFRSLFCRTYCAE-EKQQGSMIVEGFEQPNPETTSGMKRGDYSKLDTDGLVEPGSRVLGD 311
R R E EK + G P+ T+ D L D ++ G +V D
Sbjct 817 FSRCYSLRRVTVEIEKLNHAAERPGGLNNRPQITNVTPVDD---LTGDSVIGVGQKVKKD 873
Query 312 DVIVGKTSPNFDDNDPLAPPGAEANLSKTKKDCSLCLRSSESGVVDTVMLSVNSKGSRFV 371
D ++ K + + K + + ++ VD VM S
Sbjct 874 DTLLKKLT---------------QTSTGQIKVTDIKYQFNQPAYVDRVMCITTIAESVMY 918
Query 372 KVKVRSVRIPQTGDKFASRHGQKGTIGITYRQEDMPFTEDGVVPDLLMNPHAVPSRMTIG 431
K+ +R VR+P+ GDK++SRHGQKG +G+ QE++PF+E G VPDL+MNPH PSRMT+G
Sbjct 919 KIMLRQVRLPEIGDKYSSRHGQKGVVGLIESQENLPFSEHGWVPDLIMNPHGFPSRMTVG 978
Query 432 HLVECLLGKTAAIIGGEGDATPFNDYTVSWIAGELHRLGFERHGNERLYHGHTGLHMPSL 491
++E + K A + G D TPF ++ I L + GF G E LY G TG + +L
Sbjct 979 KMLELVAAKAAVLNGIFEDGTPFEADSLPAIERSLIKKGFHPAGKEILYSGITGEPLETL 1038
Query 492 IFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFGEMERDCMISHGAA 551
IF GP YYQ+LKHMV DKIHARA GP +LTRQP EG+S++GGLR GEMERDC+I++GA+
Sbjct 1039 IFTGPMYYQKLKHMVSDKIHARAVGPRQSLTRQPTEGRSKDGGLRLGEMERDCLIAYGAS 1098
Query 552 RMLKERFFDQSDAYRIHCCEICGTMCVADLQRLAFECKLCGNSNKISQVYIPYACKLLLQ 611
+L ER SD +++ C CG + C C + + V IPYACKLL Q
Sbjct 1099 GLLVERLMLSSDVFQMDVCHQCGFIGYDGW------CAYCKQRGQTATVAIPYACKLLFQ 1152
Query 612 ELTSMCIYPKLVLQ 625
EL +M I P ++L+
Sbjct 1153 ELQAMNIRPNVILK 1166
> ath:AT5G45140 NRPC2; NRPC2; DNA binding / DNA-directed RNA polymerase/
ribonucleoside binding; K03021 DNA-directed RNA polymerase
III subunit RPC2 [EC:2.7.7.6]
Length=1161
Score = 428 bits (1101), Expect = 3e-119, Method: Compositional matrix adjust.
Identities = 240/630 (38%), Positives = 349/630 (55%), Gaps = 25/630 (3%)
Query 9 DRCKVFINGDWAGCFDEAETLCNTLKEIRRKGHIRNDTSIVRDIINREVKIFTDAGRAMR 68
D V +NG G + N+L+ +RR G I S+ + V + +D GR R
Sbjct 546 DSFLVILNGLILGKHSRPQYFANSLRRLRRAGKIGEFVSVFTNEKQHCVYVASDVGRVCR 605
Query 69 PLYVVDSDTGQLRIRKADVDKVRSMVGTSEKGAGWNHLMSCGVIEYIDCEEEETSMVAMF 128
PL + +D G R+++ + +++ V T ++ + G+IEY+D EE +++A++
Sbjct 606 PLVI--ADKGISRVKQHHMKELQDGVRT------FDDFIRDGLIEYLDVNEENNALIALY 657
Query 129 HKD----LSEKGKSIP--YTHCEIHPSLILGVCASIIPFPDHNQSPRNVYQSAMGKQAMG 182
D L E ++ TH EI P ILGV A +IP+P HNQSPRN YQ AMGKQAMG
Sbjct 658 ESDGTTELDEGAEAAKADTTHIEIEPFTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMG 717
Query 183 VYTTNFNLRLDTLAHLLYYPQKPLVCTRAMEHLKFRELPAGINTIVAILCYSGYNQEDSL 242
N R+DTL +LL YPQ+PL+ TR +E + + +L AG N VA++ +SGY+ ED++
Sbjct 718 NIAYNQLNRMDTLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSFSGYDIEDAI 777
Query 243 IMNRNSIDRGLFRSLFCRTYCAEEKQQGSMIVEGFEQPNPETTSGMKRGDYSKLDTDGLV 302
+MN++S+DRG R + + A ++ + + P +G LD DGL
Sbjct 778 VMNKSSLDRGFGRCIVMKKIVAMSQKYDNCTADRILIPQ---RTGPDAEKMQILDDDGLA 834
Query 303 EPGSRVLGDDVIVGKTSPNFDDNDPLAPPGAEANLSKTKKDCSLCLRSSESGVVDTVMLS 362
PG + +D+ + K P D +++ ++ E+ VVD V L
Sbjct 835 TPGEIIRPNDIYINKQVP-VDTVTKFTSALSDSQYRPARE--YFKGPEGETQVVDRVALC 891
Query 363 VNSKGSRFVKVKVRSVRIPQTGDKFASRHGQKGTIGITYRQEDMPFTEDGVVPDLLMNPH 422
+ KG +K +R R P+ GDKF+SRHGQKG GI +QED PF+E G+ PDL+MNPH
Sbjct 892 SDKKGQLCIKYIIRHTRRPELGDKFSSRHGQKGVCGIIIQQEDFPFSELGICPDLIMNPH 951
Query 423 AVPSRMTIGHLVECLLGKTAAIIGGEGDATPFNDYT-----VSWIAGELHRLGFERHGNE 477
PSRMT+G ++E L K G + F + + V I+ L GF G +
Sbjct 952 GFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFGERSGHADKVETISATLVEKGFSYSGKD 1011
Query 478 RLYHGHTGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRF 537
LY G +G + + IF+GP YYQ+LKHMV DK+HAR GP +TRQP EGKS+ GGLR
Sbjct 1012 LLYSGISGEPVEAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMMTRQPTEGKSKNGGLRV 1071
Query 538 GEMERDCMISHGAARMLKERFFDQSDAYRIHCCEICGTMCVADLQRLAFECKLCGNSNKI 597
GEMERDC+I++GA+ ++ ER SD + + C CG + + + C C N + I
Sbjct 1072 GEMERDCLIAYGASMLIYERLMISSDPFEVQVCRACGLLGYYNYKLKKAVCTTCKNGDNI 1131
Query 598 SQVYIPYACKLLLQELTSMCIYPKLVLQVA 627
+ + +PYACKLL QEL SM + P+L L A
Sbjct 1132 ATMKLPYACKLLFQELQSMNVVPRLKLTEA 1161
> tgo:TGME49_072740 DNA-directed RNA polymerase III subunit, putative
(EC:2.7.7.6); K03021 DNA-directed RNA polymerase III
subunit RPC2 [EC:2.7.7.6]
Length=1332
Score = 421 bits (1083), Expect = 3e-117, Method: Compositional matrix adjust.
Identities = 249/650 (38%), Positives = 350/650 (53%), Gaps = 55/650 (8%)
Query 1 STSPESIKDRCK--VFINGDWAGCFDEAETLCNTLKEIRRKGHIRNDTSIVRDIINREVK 58
+ S E + DR V +NG G L ++ +RR G + S+ + ++ V
Sbjct 705 AISGEELHDRGTYLVMLNGALLGVHRRPRQLMKNIRLLRRHGEVGEFVSVHVNEAHKTVY 764
Query 59 IFTDAGRAMRPLYVVDSDTGQLRIRKADVDKVRSMVGTSEKGAG-WNHLMSCGVIEYIDC 117
I +D GR RPL VVDS G+ R+ + ++ E G + L+ ++E+ID
Sbjct 765 IASDGGRLCRPLIVVDS--GRPRLLPTHMAQL-------ENGEMCFMDLLRSSILEWIDV 815
Query 118 EEEETSMVAMFHKDLSEKGKSIPYTHCEIHPSLILGVCASIIPFPDHNQSPRNVYQSAMG 177
EE ++A+ +D++ + TH EI P +LGV A +I FP+HNQSPRN YQ AMG
Sbjct 816 NEENNLLIALREEDITAE-----TTHLEIDPLTLLGVVAGLIAFPNHNQSPRNTYQCAMG 870
Query 178 KQAMGVYTTNFNLRLDTLAHLLYYPQKPLVCTRAMEHLKFRELPAGINTIVAILCYSGYN 237
KQAMG N R DTL +LL YPQKPL +R ++ + F +LPAG N VAI+ +SGY+
Sbjct 871 KQAMGAIAYNQFNRCDTLLYLLVYPQKPLCKSRTLDLVHFEQLPAGQNASVAIMSFSGYD 930
Query 238 QEDSLIMNRNSIDRGLFRSLFCRTYCAEEKQ--QGSM-------IVEGFEQPNPETTSGM 288
ED++++NR ++DRG R R Y E K+ GS + + + + SG+
Sbjct 931 IEDAIVLNRGAVDRGFGRCFALRRYSVELKKYFNGSTDRTFPPPVAQASGPGSGKAASGL 990
Query 289 KRGDY------------SKLDTDGLVEPGSRVLGDDVIVGKTSPNFDD---NDPLAPPGA 333
R + L+ DG+V G + D V V K SP +DPL
Sbjct 991 HRKSFFPGGRGAVSRRFEALEDDGVVRVGELLEEDQVYVHKFSPTNTREHVSDPL----- 1045
Query 334 EANLSKTKKDCSLC-LRSSESGVVDTVMLSVNSKGSRFVKVKVRSVRIPQTGDKFASRHG 392
L + S ++ V+ V+ + NS G R KV +R R+P+ GDKF+SRHG
Sbjct 1046 --QLDNSLYAPSFARYKTVVPSYVERVVCTDNSDGCRTYKVMMRQTRLPELGDKFSSRHG 1103
Query 393 QKGTIGITYRQEDMPFTEDGVVPDLLMNPHAVPSRMTIGHLVECLLGKTAAIIGGEGDAT 452
QKG +G+ ED+PF E G PDL+MNPH PSRMT+G ++E + GK+A +G T
Sbjct 1104 QKGVVGLIAPAEDLPFAESGWCPDLIMNPHGFPSRMTVGKMMELIAGKSALQVGACQYGT 1163
Query 453 PFNDYTVSWIAGELHRLGFERHGNERLYHGHTGLHMPSLIFIGPTYYQRLKHMVDDKIHA 512
F V + L GF G E L G TG + + +F GP YYQ+LKHMV DKIHA
Sbjct 1164 AFGGVGVETLGEILAAHGFHYSGKEYLTSGITGEALQTYVFAGPIYYQKLKHMVQDKIHA 1223
Query 513 RARGPVAALTRQPMEGKSREGGLRFGEMERDCMISHGAARMLKERFFDQSDAYRIHCCEI 572
R RGP LTRQP EG+++EGGLR GEMERDC++++G++ +L ER SD + C
Sbjct 1224 RGRGPRQLLTRQPTEGRAKEGGLRLGEMERDCLVAYGSSALLMERLMLSSDVFEASVCST 1283
Query 573 CGTMCVADLQRLAFECKLCGNSNKISQVYIPYACKLLLQELTSMCIYPKL 622
CG M C C + ++ + +PYACKLL QEL SM + P+L
Sbjct 1284 CGLMGYEGW------CPYCKSGKHVAPIRMPYACKLLFQELMSMNVCPRL 1327
> ath:AT3G18090 NRPD2B; NRPD2b; DNA binding / DNA-directed RNA
polymerase/ ribonucleoside binding
Length=1055
Score = 420 bits (1079), Expect = 9e-117, Method: Compositional matrix adjust.
Identities = 258/628 (41%), Positives = 360/628 (57%), Gaps = 57/628 (9%)
Query 12 KVFINGDWAGCFDEAETLCNTLKEIRRKGHIRNDTSIVRDIINREVKIFTDAGRAMRPLY 71
KV +NGDW G ++E+ LK RR+ + + I RD + EV+IFTDAGR +RPL
Sbjct 455 KVLLNGDWVGLCADSESFVGELKSRRRQSELPLEMEIKRDKDDNEVRIFTDAGRLLRPLL 514
Query 72 VVDSDTGQLRIRKADVDKVRSMVGTSEKGAGWNHLMSCGVIEYIDCEEEETSMVAMFHKD 131
VV++ + K DK + HL+ G++E I EEEE A K
Sbjct 515 VVEN------LHKLKQDKPTQY--------PFKHLLDQGILELIGIEEEEDCTTAWGIKQ 560
Query 132 LSEKGKSIPYTHCEIHPSLILGVCASIIPFPDHNQSPRNVYQSAMG-KQAMGVYTTNFNL 190
L ++ K+ YTHCE+ S +LGV +I+PF +H+ R +YQS +QA+G +TN N+
Sbjct 561 LLKEPKN--YTHCELDLSFLLGVSCAIVPFANHDHGKRVLYQSQKHCQQAIGFSSTNPNI 618
Query 191 RLDTLAHLLYYPQKPLVCTRAMEHLKFRELPAGINTIVAILCYSGYNQEDSLIMNRNSID 250
R DTL+ L+YPQKPL T A E L+ L G N IVA+ + GYNQEDS++MN+ S++
Sbjct 619 RCDTLSQQLFYPQKPLFKTLASECLEKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLE 678
Query 251 RGLFRSLFCRTYCAEEKQQGSMIVEGFEQPNPETTSGMKRGDYSKLDTDGLVEPGSRVLG 310
RG+FRS R+Y AE + S + ++ + K G L+ DG G+ +
Sbjct 679 RGMFRSEQIRSYKAEVDTKDSEKRKKMDELVQFGKTYSKIGKVDSLEDDGFPFIGANMST 738
Query 311 DDVIVGKTSPNFDDNDPLAPPGAEANLSKTKKDCSLCLRSSESGVVDTVMLSVNSKGSRF 370
D+++G+ + + GA D S+ L+ +E G+V V+LS N +G F
Sbjct 739 GDIVIGRCTES----------GA---------DHSIKLKHTERGIVQKVVLSSNDEGKNF 779
Query 371 VKVKVRSVRIPQTGDKFASRHGQKGTIGITYRQEDMPFTEDGVVPDLLMNPHAVPSRMTI 430
V +R VR P GDKF+S HGQKG +G Q++ PFT G+VPD+++NPHA PSR T
Sbjct 780 AAVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTP 839
Query 431 GHLVECLLGKTAA--IIGGEGD----------ATPFNDYTVSWIAGELHRLGFERHGNER 478
G L+E L K A I EG ATPF+ V+ I +LHR GF R GNER
Sbjct 840 GQLLEAALSKGIACPIQKKEGSSAAYTKLTRHATPFSTPGVTEITEQLHRAGFSRWGNER 899
Query 479 LYHGHTGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFG 538
+Y+G +G M SLIF+GPT+YQRL HM ++K+ R GPV LTRQP+ + R GG+RFG
Sbjct 900 VYNGRSGEMMRSLIFMGPTFYQRLVHMSENKVKFRNTGPVHPLTRQPVADRKRFGGIRFG 959
Query 539 EMERDCMISHGAARMLKERFFDQSDAYRIHCCEICGTMCVADLQRLAFE--------CKL 590
EMERDC+I+HGA+ L ER F SD+ ++H C C T ++R C++
Sbjct 960 EMERDCLIAHGASANLHERLFTLSDSSQMHICRKCKTYANV-IERTPSSGRKIRGPYCRV 1018
Query 591 CGNSNKISQVYIPYACKLLLQELTSMCI 618
C +S+ + +VY+PY KLL QEL SM I
Sbjct 1019 CASSDHVVRVYVPYGAKLLCQELFSMGI 1046
> xla:398890 polr2b, MGC68569; polymerase (RNA) II (DNA directed)
polypeptide B, 140kDa; K03010 DNA-directed RNA polymerase
II subunit RPB2 [EC:2.7.7.6]
Length=949
Score = 420 bits (1079), Expect = 1e-116, Method: Compositional matrix adjust.
Identities = 212/385 (55%), Positives = 271/385 (70%), Gaps = 12/385 (3%)
Query 3 SPESIKDRCKVFINGDWAGCFDEAETLCNTLKEIRRKGHI-RNDTSIVRDIINREVKIFT 61
SP +I D K+F+NG W G + E L NTL+++RR+ I ++ S++RDI RE++I+T
Sbjct 557 SPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYT 616
Query 62 DAGRAMRPLYVVDSDTGQLRIRKADVDKVRSMVGTSEKGAGWNHLMSCGVIEYIDCEEEE 121
DAGR RPL +V+ L+ R D K R S W L++ GV+EYID EEE
Sbjct 617 DAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYS-----WQDLVASGVVEYIDTLEEE 671
Query 122 TSMVAMFHKDLSEKGKSI--PYTHCEIHPSLILGVCASIIPFPDHNQSPRNVYQSAMGKQ 179
T M+AM DL EKG + YTHCEIHPS+ILGVCASIIPFPDHNQSPRN YQSAMGKQ
Sbjct 672 TVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQ 731
Query 180 AMGVYTTNFNLRLDTLAHLLYYPQKPLVCTRAMEHLKFRELPAGINTIVAILCYSGYNQE 239
AMGVY TNF++R+DTLAH+LYYPQKPLV TR+ME+L+FRELPAGIN+IVAI Y+GYNQE
Sbjct 732 AMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQE 791
Query 240 DSLIMNRNSIDRGLFRSLFCRTYCAEEKQQGSMIVEGFEQPNPETTSGMKRGDYSKLDTD 299
DS+IMNR+++DRG FRS+F R+Y +E ++G E FE+P ET GM+ Y KLD D
Sbjct 792 DSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDD 851
Query 300 GLVEPGSRVLGDDVIVGKTSPNFDDNDPLAPPGAEANLSKTKKDCSLCLRSSESGVVDTV 359
GL+ PG RV GDDVI+GKT ++ D L N TK+DCS LR+SE+G+VD V
Sbjct 852 GLIAPGVRVSGDDVIIGKTVTLPENEDEL----ESTNRRYTKRDCSTFLRTSETGIVDQV 907
Query 360 MLSVNSKGSRFVKVKVRSVRIPQTG 384
M+++N +G +F K++V I G
Sbjct 908 MVTLNQEGYKFCKIRVSFTSIVYFG 932
> ath:AT3G23780 NRPD2A; NRPD2A; DNA binding / DNA-directed RNA
polymerase
Length=1172
Score = 419 bits (1076), Expect = 2e-116, Method: Compositional matrix adjust.
Identities = 254/627 (40%), Positives = 359/627 (57%), Gaps = 56/627 (8%)
Query 12 KVFINGDWAGCFDEAETLCNTLKEIRRKGHIRNDTSIVRDIINREVKIFTDAGRAMRPLY 71
KV +NGDW G ++E+ LK RR+ + + I RD + EV+IFTDAGR +RPL
Sbjct 573 KVLLNGDWVGLCADSESFVAELKSRRRQSELPREMEIKRDKDDNEVRIFTDAGRLLRPLL 632
Query 72 VVDSDTGQLRIRKADVDKVRSMVGTSEKGAGWNHLMSCGVIEYIDCEEEETSMVAMFHKD 131
VV++ ++ + ++HL+ G++E I EEEE A K
Sbjct 633 VVEN--------------LQKLKQEKPSQYPFDHLLDHGILELIGIEEEEDCNTAWGIKQ 678
Query 132 LSEKGKSIPYTHCEIHPSLILGVCASIIPFPDHNQSPRNVYQSAMG-KQAMGVYTTNFNL 190
L ++ K YTHCE+ S +LGV +++PF +H+ R +YQS +QA+G +TN N+
Sbjct 679 LLKEPKI--YTHCELDLSFLLGVSCAVVPFANHDHGRRVLYQSQKHCQQAIGFSSTNPNI 736
Query 191 RLDTLAHLLYYPQKPLVCTRAMEHLKFRELPAGINTIVAILCYSGYNQEDSLIMNRNSID 250
R DTL+ L+YPQKPL T A E LK L G N IVA+ + GYNQEDS++MN+ S++
Sbjct 737 RCDTLSQQLFYPQKPLFKTLASECLKKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLE 796
Query 251 RGLFRSLFCRTYCAEEKQQGSMIVEGFEQPNPETTSGMKRGDYSKLDTDGLVEPGSRVLG 310
RG+FRS R+Y AE + S + ++ + K G L+ DG G+ +
Sbjct 797 RGMFRSEQIRSYKAEVDAKDSEKRKKMDELVQFGKTHSKIGKVDSLEDDGFPFIGANMST 856
Query 311 DDVIVGKTSPNFDDNDPLAPPGAEANLSKTKKDCSLCLRSSESGVVDTVMLSVNSKGSRF 370
D+++G+ + + GA D S+ L+ +E G+V V+LS N +G F
Sbjct 857 GDIVIGRCTES----------GA---------DHSIKLKHTERGIVQKVVLSSNDEGKNF 897
Query 371 VKVKVRSVRIPQTGDKFASRHGQKGTIGITYRQEDMPFTEDGVVPDLLMNPHAVPSRMTI 430
V +R VR P GDKF+S HGQKG +G Q++ PFT G+VPD+++NPHA PSR T
Sbjct 898 AAVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTP 957
Query 431 GHLVECLLGK-TAAIIGGEGD----------ATPFNDYTVSWIAGELHRLGFERHGNERL 479
G L+E L K A I EG ATPF+ V+ I +LHR GF R GNER+
Sbjct 958 GQLLEAALSKGIACPIQKEGSSAAYTKLTRHATPFSTPGVTEITEQLHRAGFSRWGNERV 1017
Query 480 YHGHTGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFGE 539
Y+G +G M S+IF+GPT+YQRL HM +DK+ R GPV LTRQP+ + R GG++FGE
Sbjct 1018 YNGRSGEMMRSMIFMGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGE 1077
Query 540 MERDCMISHGAARMLKERFFDQSDAYRIHCCEICGTMCVADLQRLAFE--------CKLC 591
MERDC+I+HGA+ L ER F SD+ ++H C C T ++R C++C
Sbjct 1078 MERDCLIAHGASANLHERLFTLSDSSQMHICRKCKTYANV-IERTPSSGRKIRGPYCRVC 1136
Query 592 GNSNKISQVYIPYACKLLLQELTSMCI 618
+S+ + +VY+PY KLL QEL SM I
Sbjct 1137 VSSDHVVRVYVPYGAKLLCQELFSMGI 1163
> cpv:cgd1_2770 RNA polymerase 1 beta subunit ; K03002 DNA-directed
RNA polymerase I subunit RPA2 [EC:2.7.7.6]
Length=1281
Score = 337 bits (865), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 225/642 (35%), Positives = 315/642 (49%), Gaps = 95/642 (14%)
Query 57 VKIFTDAGRAMRPLYVVDSDTGQLRIRKADVDKVRSM------VG-TSEKGAGWNHLMSC 109
+ IFT GR +RP+ + + A VD + + +G T E+ L+
Sbjct 654 IYIFTAPGRLVRPI---------MHLETAQVDWIGPLGQPWMNIGVTEEETRKSTKLLEI 704
Query 110 G--VIEYIDCEEEET-----SMVAMFHKDLSEKGKSIP--YTHCEIHPSLILGVCASIIP 160
+I D E EE + KD S+P YTH E+HPS IL V AS+IP
Sbjct 705 QKRLIGISDTESEEQLKNDLKALKKLIKDNDRVLSSVPVNYTHMELHPSTILSVTASLIP 764
Query 161 FPDHNQSPRNVYQSAMGKQAMGVYTTNFNLRLDTLAHLLYYPQKPLVCTRAMEHLKFREL 220
+ HNQSPRN+YQ M KQ MG N R D + L PQ+P + T+ F E
Sbjct 765 YAHHNQSPRNMYQCQMLKQTMGTPCLNHPYRTDNKMYRLLTPQEPTIITKGYSSFGFSEY 824
Query 221 PAGINTIVAILCYSGYNQEDSLIMNRNSIDRGLFRSLFCRTY-------CAEEKQQGSMI 273
P G N IVA++ YSGY+ ED++I+N++S DRG+F + +T A +K
Sbjct 825 PTGTNAIVAVMSYSGYDMEDAMILNKSSYDRGMFHACVYKTKIISAAPPSATKKSDAESY 884
Query 274 VEGFEQPNPETTSGMKRGDYSKLDTDGLVEPGSRVLGDDVIV------------GKTSPN 321
F P+ +K +L DGL G R+ I T
Sbjct 885 F--FHNIGPDGELVVK-----ELSADGLPNIGQRLTKGSPICRVERIGSGGGPSNATIQT 937
Query 322 FDDNDPLAPPGAEANLSKTKKDCSLCLRSSESGVVDTVMLSVNSKGSRFVKVKVRSVRIP 381
+ D++ +++ S+ L+ S +S V +K+R VR P
Sbjct 938 YHDDEV----AFVEKINRIASGISIELQQDSLSGGGGDGASSSSGYGEKVSIKLRIVRNP 993
Query 382 QTGDKFASRHGQKGTIGITYRQEDMPFTEDGVVPDLLMNPHAVPSRMTIGHLVECLLGKT 441
GDKFASRHGQKG + + + QE+MPF+E G+VPD+L NPH PSRMTIG L+E + GK
Sbjct 994 MVGDKFASRHGQKGILSMLWPQENMPFSESGMVPDILFNPHGFPSRMTIGMLLESMGGKA 1053
Query 442 AAIIGGEG-DATPFN---------------------DYTVSWIAGELHRLGFERHGNERL 479
A I G DATPFN TV + L R GF+ +G E L
Sbjct 1054 ACIHGARSLDATPFNINISDDLSRSEENCEDDKAGEKTTVDYFGKALERAGFQYYGCEPL 1113
Query 480 YHGHTGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFGE 539
Y+G TG+ +P IF+G YYQRL+HMV DK RA GP+ ALTRQP++G+ R GG+RFGE
Sbjct 1114 YNGMTGVELPCHIFMGVIYYQRLRHMVADKAQVRATGPIDALTRQPVKGRKRHGGIRFGE 1173
Query 540 MERDCMISHGAARMLKERFFDQSDAYRIHCCEICGTMCVADLQRLAFE------------ 587
MERD +IS+G + +L +R SD +R + C CG + + +R +
Sbjct 1174 MERDSLISYGVSSILVDRLLICSDEHRAYVCPKCGLIISSISKRAMAQSMSSSKLSNCIP 1233
Query 588 ----CKLCGNSNKISQVYIPYACKLLLQELTSMCIYPKLVLQ 625
C++C + +I + +PY + L EL +M I +L LQ
Sbjct 1234 PIAVCRVCKSPCRI--ITLPYIFRYLSNELAAMNIVIRLHLQ 1273
> hsa:84172 POLR1B, FLJ10816, FLJ21921, MGC131780, RPA135, RPA2,
Rpo1-2; polymerase (RNA) I polypeptide B, 128kDa (EC:2.7.7.6);
K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]
Length=1079
Score = 331 bits (848), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 200/536 (37%), Positives = 284/536 (52%), Gaps = 49/536 (9%)
Query 107 MSCGVIEYIDCEEEETSMVAMFHKDLSEKGKSIPYTHCEIHPSLILGVCASIIPFPDHNQ 166
++ G E I E+ VA+F ++ TH E+ P +L V A+ IPF DHNQ
Sbjct 570 LALGKEELIGTMEQIFMNVAIFEDEVFAGVT----THQELFPHSLLSVIANFIPFSDHNQ 625
Query 167 SPRNVYQSAMGKQAMGVYTTNFNLRLDTLAHLLYYPQKPLVCTRAMEHLKFRELPAGINT 226
SPRN+YQ MGKQ MG + R D + L PQ PLV ++ P G N
Sbjct 626 SPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNA 685
Query 227 IVAILCYSGYNQEDSLIMNRNSIDRGLFRSLFCRTYCAEEKQQGSMIVEGFEQPNPETTS 286
IVA++ Y+GY+ ED++I+N+ S +RG + + K + + E +Q +
Sbjct 686 IVAVISYTGYDMEDAMIVNKASWERGF-------AHGSVYKSEFIDLSEKIKQGDSSLVF 738
Query 287 GMKRGD---YSKLDTDGLVEPGSRVLGDDVIVGKTSPNFDDNDPLAPPGAEANLSKTKKD 343
G+K GD KLD DGL G+++ D P + NL+ T +
Sbjct 739 GIKPGDPRVLQKLDDDGLPFIGAKLQYGD-----------------PYYSYLNLN-TGES 780
Query 344 CSLCLRSSESGVVDTVMLSVNSKGS---RFVKVKVRSVRIPQTGDKFASRHGQKGTIGIT 400
+ +S E+ VVD + + N GS + V + +R R P GDKFASRHGQKG +
Sbjct 781 FVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRL 840
Query 401 YRQEDMPFTEDGVVPDLLMNPHAVPSRMTIGHLVECLLGKTAAIIGGEGDATPF----ND 456
+ EDMPFTE G+VPD+L NPH PSRMTIG L+E + GK+AA+ G DATPF +
Sbjct 841 WPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEEN 900
Query 457 YTVSWIAGELHRLGFERHGNERLYHGHTGLHMPSLIFIGPTYYQRLKHMVDDKIHARARG 516
+ + L G+ +G ERLY G +GL + + IFIG YYQRL+HMV DK R G
Sbjct 901 SALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTG 960
Query 517 PVAALTRQPMEGKSREGGLRFGEMERDCMISHGAARMLKERFFDQSDAYRIHCCEICGTM 576
+T QP+ G++ +GG+RFGEMERD +++HG + +L +R F+ SD H C CG++
Sbjct 961 ARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSL 1020
Query 577 CVADLQR----------LAFECKLCGNSNKISQVYIPYACKLLLQELTSMCIYPKL 622
L++ + C LC S+ I V +PY + + EL +M I KL
Sbjct 1021 LSPLLEKPPPSWSAMRNRKYNCTLCSRSDTIDTVSVPYVFRYFVAELAAMNIKVKL 1076
> bbo:BBOV_II001980 18.m06155; DNA-directed RNA polymerase, beta
subunit; K03002 DNA-directed RNA polymerase I subunit RPA2
[EC:2.7.7.6]
Length=1283
Score = 329 bits (843), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 211/644 (32%), Positives = 324/644 (50%), Gaps = 106/644 (16%)
Query 57 VKIFTDAGRAMRPLYVVDSDTGQLRIRKADVDKVRSMVGTSEKGAGWNHLMSC----GVI 112
+ I T GR +RP+ + S G++ + ++ S + SE+ A +H M G
Sbjct 661 IMILTYPGRVIRPVICLTS--GEIEW-IGPITQLWSTIAVSEEEARISHQMVASNAEGKC 717
Query 113 EYIDCEEEETSMVAMFHKDLSEKGKS----------IPYTHCEIHPSLILGVCASIIPFP 162
+ + +E A+ H + S+ S + Y + E+ PS IL V A++ PF
Sbjct 718 KTLSIDE------ALMHDNSSDHAVSPVKKVIDNVPVKYDYMEVSPSAILSVTAALTPFS 771
Query 163 DHNQSPRNVYQSAMGKQAMGVYTTNFNLRLDTLAHLLYYPQKPLVCTRAMEHLKFRELPA 222
+HNQSPRN+YQ M KQ+MGV R D A+ L +PQKPLV T + + + P
Sbjct 772 NHNQSPRNMYQCQMLKQSMGVPYHCEQFRSDVKAYRLLFPQKPLVTTTEFRQMNYEDYPT 831
Query 223 GINTIVAILCYSGYNQEDSLIMNRNSIDRGLFRSLFCRTYCAEEKQQGSMIVEGFEQPNP 282
G+N +VA++ ++G++ ED++I+N++S+DRG F ++ K +M G + N
Sbjct 832 GMNAVVAVIAHTGFDMEDAMIINKSSLDRGAFHGCIYKS-----KVIDAMPANGRSRGNQ 886
Query 283 E---TTSGMKRGDYSKLDTDGLVEPGSRVLGDDVIVGKTSPNFDDNDPLAPPGAEANLSK 339
T+ + + LD DGL G+RV K +P G++ +
Sbjct 887 HYFANTNHLGSKIIASLDKDGLPNVGARV-------KKGTPICRIESHEKVGGSKQISDR 939
Query 340 TKKDCSLCLRSSESGVVDTVML-------------SVNSKGSRFVKVKVRSVRIPQTGDK 386
+K E +VD V + + N KG+R +K R VR P GDK
Sbjct 940 VEK------YHDEDAIVDQVTIIGCNDASVAEMPNASNIKGTR-ATIKFRIVRNPIVGDK 992
Query 387 FASRHGQKGTIGITYRQEDMPFTEDGVVPDLLMNPHAVPSRMTIGHLVECLLGKTAAIIG 446
FASRHGQKG + + + E+MPF E G++PD++ NPH +PSRMTIG L+EC+ GK+AAI G
Sbjct 993 FASRHGQKGILSMAWPAENMPFLESGIIPDIIFNPHGLPSRMTIGKLIECMAGKSAAIHG 1052
Query 447 GEGDATPFNDY---------------------------------------TVSWIAGELH 467
DAT F Y + + L
Sbjct 1053 AFQDATCFRKYPKQMATGNKWIDHGGLKGWEERGFRYMSKEEELSKTEDDVIDYFGKTLL 1112
Query 468 RLGFERHGNERLYHGHTGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPME 527
+ G++ +G E +Y G G + + IFIG +YQRL+HMV DK RA GPV A+T+QP++
Sbjct 1113 QAGYDYYGTESMYCGSLGTEIRTHIFIGCIFYQRLRHMVSDKAQVRATGPVDAITKQPVK 1172
Query 528 GKSREGGLRFGEMERDCMISHGAARMLKERFFDQSDAYRIHCCEICGTMCVADL------ 581
G+ GG+RFGEMERD +I+HGA+ +L++R SDA+ + C CG++ A +
Sbjct 1173 GRKNRGGIRFGEMERDSLIAHGASALLQDRLIHCSDAHTAYVCPNCGSIISATVTSVGAT 1232
Query 582 -QRLAFECKLCGNSNKISQVYIPYACKLLLQELTSMCIYPKLVL 624
+R C++C + K+ V IPY + + EL S+ + +L L
Sbjct 1233 NKRSVSHCRICKVACKL--VTIPYVLRYVAHELASINVGIRLHL 1274
> mmu:20017 Polr1b, 128kDa, D630020H17Rik, RPA116, RPA135, RPA2,
Rpo1-2; polymerase (RNA) I polypeptide B (EC:2.7.7.6); K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]
Length=1135
Score = 328 bits (840), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 193/501 (38%), Positives = 271/501 (54%), Gaps = 45/501 (8%)
Query 142 THCEIHPSLILGVCASIIPFPDHNQSPRNVYQSAMGKQAMGVYTTNFNLRLDTLAHLLYY 201
TH E+ P +L V A+ IPF DHNQSPRN+YQ MGKQ MG + R D + L
Sbjct 657 THQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQNRSDNKLYRLQT 716
Query 202 PQKPLVCTRAMEHLKFRELPAGINTIVAILCYSGYNQEDSLIMNRNSIDRGLFRSLFCRT 261
PQ PLV + P G N IVA++ Y+GY+ ED++I+N+ S +RG
Sbjct 717 PQSPLVRPCMYDFYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGF-------A 769
Query 262 YCAEEKQQGSMIVEGFEQPNPETTSGMKRGD---YSKLDTDGLVEPGSRVLGDDVIVGKT 318
+ + K + + E F+Q G+K GD KLD DGL G+++ D
Sbjct 770 HGSVYKSEFIDLSEKFKQGEDNLVFGVKPGDPRVMQKLDDDGLPFIGAKLEYGD------ 823
Query 319 SPNFDDNDPLAPPGAEANLSKTKKDCSLCLRSSESGVVDTVMLSVNSKGSRFVKVKVRSV 378
P + NL+ T + + +S E+ VVD + + N GS K +V
Sbjct 824 -----------PYYSYLNLN-TGEGFVVYYKSKENCVVDNIKVCSNDMGSGKFKCICITV 871
Query 379 RIPQT---GDKFASRHGQKGTIGITYRQEDMPFTEDGVVPDLLMNPHAVPSRMTIGHLVE 435
RIP+ GDKFASRHGQKG + + EDMPFTE G++PD+L NPH PSRMTIG L+E
Sbjct 872 RIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFPSRMTIGMLIE 931
Query 436 CLLGKTAAIIGGEGDATPF----NDYTVSWIAGELHRLGFERHGNERLYHGHTGLHMPSL 491
+ GK+AA+ G DATPF + + + L G+ +G ERLY G +G+ + +
Sbjct 932 SMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGMELEAD 991
Query 492 IFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFGEMERDCMISHGAA 551
IFIG YYQRL+HMV DK R G +T QP+ G++ +GG+RFGEMERD +++HG +
Sbjct 992 IFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPLGGRNVQGGIRFGEMERDALLAHGTS 1051
Query 552 RMLKERFFDQSDAYRIHCCEICGTMCVADLQR----------LAFECKLCGNSNKISQVY 601
+L +R F+ SD H C CG++ L++ + C +CG S+ I V
Sbjct 1052 FLLHDRLFNCSDRSVAHMCVECGSLLSPLLEKPPPSWSAMRNRKYNCTVCGRSDTIDTVS 1111
Query 602 IPYACKLLLQELTSMCIYPKL 622
+PY + + EL +M I KL
Sbjct 1112 VPYVFRYFVAELAAMNIKVKL 1132
> dre:325603 polr1b, MGC113960, MGC158198, MGC192771, MGC66298,
wu:fc91a05, zgc:66298; polymerase (RNA) I polypeptide B (EC:2.7.7.6);
K03002 DNA-directed RNA polymerase I subunit RPA2
[EC:2.7.7.6]
Length=1132
Score = 325 bits (832), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 205/536 (38%), Positives = 279/536 (52%), Gaps = 50/536 (9%)
Query 107 MSCGVIEYIDCEEEETSMVAMFHKDLSEKGKSIPYTHCEIHPSLILGVCASIIPFPDHNQ 166
+S G E I E+ V +F K++ E G + TH E+ P +L V A IPF DHNQ
Sbjct 624 LSLGKQELIGIFEQVYLNVGIFEKEI-EDGVT---THQELFPHSMLSVVAEFIPFSDHNQ 679
Query 167 SPRNVYQSAMGKQAMGVYTTNFNLRLDTLAHLLYYPQKPLVCTRAMEHLKFRELPAGINT 226
SPRN+YQ M KQ MG ++ R D + L PQ PLV +H P G N
Sbjct 680 SPRNMYQCQMSKQTMGFPLHSYQYRSDNKLYRLQTPQSPLVRPAMYDHYDVDNYPIGTNA 739
Query 227 IVAILCYSGYNQEDSLIMNRNSIDRGLFRSLFCRTYCAE--EKQQGS-MIVEGFEQPNPE 283
IVA++ Y+GY+ ED++I+N++S +RG +T + EK +G IV G + +P+
Sbjct 740 IVAVISYTGYDMEDAMIVNKSSWERGFAHGSVYKTEIIDLSEKVKGDDSIVFGVKPGDPK 799
Query 284 TTSGMKRGDYSKLDTDGLVEPGSRVLGDDVIVGKTSPNFDDNDPLAPPGAEANLSKTKKD 343
KLD DGL GS + D G S N T +
Sbjct 800 VMG--------KLDADGLPFIGSVLKYGDPFYGYISLN------------------TGQS 833
Query 344 CSLCLRSSESGVVDTVMLSVNSKGS-RFVKVKV--RSVRIPQTGDKFASRHGQKGTIGIT 400
+ ES VVD + + N G+ RF ++ V R R P GDKFASRHGQKG +
Sbjct 834 HVYFYKYQESCVVDNIKVCSNETGTGRFKRICVTSRVPRNPTIGDKFASRHGQKGILSRL 893
Query 401 YRQEDMPFTEDGVVPDLLMNPHAVPSRMTIGHLVECLLGKTAAIIGGEGDATPFN----D 456
+ EDMPFTE G+ PD+L NPH PSRMTIG L+E + GK+A++ G DATPF +
Sbjct 894 WPAEDMPFTESGMSPDILFNPHGFPSRMTIGMLIESMAGKSASLHGLCHDATPFTFSEEN 953
Query 457 YTVSWIAGELHRLGFERHGNERLYHGHTGLHMPSLIFIGPTYYQRLKHMVDDKIHARARG 516
+ L G+ +G ERLY G +GL + + IFIG YYQRL+HMV DK R G
Sbjct 954 SALEHFGELLKAAGYNYYGTERLYSGLSGLELEADIFIGVVYYQRLRHMVSDKFQVRTTG 1013
Query 517 PVAALTRQPMEGKSREGGLRFGEMERDCMISHGAARMLKERFFDQSDAYRIHCCEICGTM 576
+T QPM G++ +GG+RFGEMERD +++HG + +L +R F+ SD C CG++
Sbjct 1014 ARDKVTNQPMGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAQVCMDCGSL 1073
Query 577 CVADLQRLAFE----------CKLCGNSNKISQVYIPYACKLLLQELTSMCIYPKL 622
L++ C LC S+ I V +PY K + EL +M I KL
Sbjct 1074 LSTLLEKPPPNWSATRHRKTICLLCNKSDSIETVSVPYVFKYFVAELAAMNIKIKL 1129
> xla:379695 polr1b, MGC68946; polymerase (RNA) I polypeptide
B, 128kDa; K03002 DNA-directed RNA polymerase I subunit RPA2
[EC:2.7.7.6]
Length=1134
Score = 318 bits (814), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 189/511 (36%), Positives = 272/511 (53%), Gaps = 49/511 (9%)
Query 135 KGKSIP--YTHCEIHPSLILGVCASIIPFPDHNQSPRNVYQSAMGKQAMGVYTTNFNLRL 192
+G+ +P TH E+ P +L V A+ IPF DHNQSPRN+YQ MGKQ MG + R
Sbjct 647 EGEIVPGETTHQELFPHSMLSVVANFIPFSDHNQSPRNMYQCQMGKQTMGFPLMTYQDRS 706
Query 193 DTLAHLLYYPQKPLVCTRAMEHLKFRELPAGINTIVAILCYSGYNQEDSLIMNRNSIDRG 252
D + L PQ PLV ++ + P G N IVA++ Y+GY+ ED++++N++S +RG
Sbjct 707 DNKLYRLQTPQSPLVRPSMYDYYEMDNYPVGTNAIVAVISYTGYDMEDAMVLNKSSWERG 766
Query 253 LFRSLFCRT----YCAEEKQQGSMIVEGFEQPNPETTSGMKRGDYSKLDTDGLVEPGSRV 308
+T + K IV G +P+ E G +LD DGL G+ +
Sbjct 767 FAHGSVYKTDHVDLSKKLKDGEDNIVFGI-KPDDERVKG-------RLDNDGLPPVGAVL 818
Query 309 LGDDVIVGKTSPNFDDNDPLAPPGAEANLSKTKKDCSLCLRSSESGVVDTVMLSVNSKG- 367
D G NF+ + K+K++C VVD + + N G
Sbjct 819 QFGDPYYGYL--NFNTGESFVA------YYKSKENC----------VVDNIKICSNDIGF 860
Query 368 --SRFVKVKVRSVRIPQTGDKFASRHGQKGTIGITYRQEDMPFTEDGVVPDLLMNPHAVP 425
+ V + +R R P GDKFASRHGQKG + + EDMPFTE G+VPD+L NPH P
Sbjct 861 GKFKSVCITMRIPRNPTIGDKFASRHGQKGILSRLWPSEDMPFTESGMVPDILFNPHGFP 920
Query 426 SRMTIGHLVECLLGKTAAIIGGEGDATPFN----DYTVSWIAGELHRLGFERHGNERLYH 481
SRMTIG L+E + GK+AA+ G DATPF + + + L G+ +G E+LY
Sbjct 921 SRMTIGMLIESMAGKSAALHGLCHDATPFTFSEENSALEYFGEMLRAGGYNFYGTEKLYS 980
Query 482 GHTGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFGEME 541
G +GL + + IFIG YYQRL+HMV DK R G +T QP+ G++ +GG+RFGEME
Sbjct 981 GISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPVGGRNIQGGIRFGEME 1040
Query 542 RDCMISHGAARMLKERFFDQSDAYRIHCCEICGTMCVADLQR----------LAFECKLC 591
RD +++HG + +L +R F SD H C CG++ L++ +C +C
Sbjct 1041 RDALLAHGTSFLLHDRLFHCSDRSTAHMCVECGSLIAPFLEKPPPSWSSIRNRKHQCVVC 1100
Query 592 GNSNKISQVYIPYACKLLLQELTSMCIYPKL 622
++ + V +PY + + EL +M I KL
Sbjct 1101 NRTDTVEAVSVPYVFRYFVAELAAMNINVKL 1131
> tpv:TP04_0334 DNA-directed RNA polymerase subunit beta (EC:2.7.7.6);
K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]
Length=1235
Score = 316 bits (809), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 189/526 (35%), Positives = 283/526 (53%), Gaps = 66/526 (12%)
Query 141 YTHCEIHPSLILGVCASIIPFPDHNQSPRNVYQSAMGKQAMGVYTTNFNLRLDTLAHLLY 200
Y + E+ IL + AS+ PF +HNQSPRN+YQ M KQ++G+ + R + ++L
Sbjct 725 YEYVELDMCCILSLSASLTPFSNHNQSPRNMYQCQMLKQSVGIPFHSQFYRSEVKTYVLT 784
Query 201 YPQKPLVCTRAMEHLKFRELPAGINTIVAILCYSGYNQEDSLIMNRNSIDRGLFRSLFCR 260
Q+PLV T+ E + F++ P G+N +VAI+ +SG++ ED++I+N+ S+DRGLF S +
Sbjct 785 SLQRPLVATKEYEKMGFQDYPTGVNCVVAIIAHSGFDMEDAMILNKASVDRGLFNSFIYK 844
Query 261 TYCAEEKQQGSMI------VEGFEQPNPETTSGMKRGDYSKLDTDGLVEPGSRVLGDDVI 314
+ + Q S VE F + ++ +K KLD DGL G ++
Sbjct 845 SKVIDLNSQASSTKERGGTVEYFNNMDKDSKLIVK-----KLDFDGLPRLGEKL------ 893
Query 315 VGKTSPNFDDNDPLAPPGAEANLSKTKKDCSLCLRSSESGVVDTVMLSVNS--------- 365
K SP + + + N+ K + + E +VD + L S
Sbjct 894 -TKNSPFYRIEE-----RGKNNIVNDK----VVKYTEEPAIVDQITLVGKSEITVGDKIS 943
Query 366 ----KGSRFVKVKVRSVRIPQTGDKFASRHGQKGTIGITYRQEDMPFTEDGVVPDLLMNP 421
K R + +K+R +R P GDKFASRHGQKG + + EDMPF E+G+VPD++ NP
Sbjct 944 CPGLKHDRAI-IKLRVLRSPIVGDKFASRHGQKGILSAVWPTEDMPFLENGIVPDVIFNP 1002
Query 422 HAVPSRMTIGHLVECLLGKTAAIIGGEGDATPFNDY----------------TVSWIAGE 465
H +PSRMTIG L+E + GK A+I G D+T F Y V +
Sbjct 1003 HGLPSRMTIGKLIEGMAGKVASIYGKPQDSTCFQAYYSENPENGDEEMEEVDVVDYFGKS 1062
Query 466 LHRLGFERHGNERLYHGHTGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQP 525
L + G+E +G E +Y G G + + IF+G YYQRL+HMV DK R+ GPV +T+QP
Sbjct 1063 LIKSGYEYYGTESMYCGTLGTEIQTHIFVGLIYYQRLRHMVSDKAQVRSTGPVDTITKQP 1122
Query 526 MEGKSREGGLRFGEMERDCMISHGAARMLKERFFDQSDAYRIHCCEICGTMCV------- 578
++G+ GG+RFGEMERD +I+HG A +L++R SDA+ + C CG++
Sbjct 1123 VKGRKNLGGIRFGEMERDALIAHGTANLLQDRLLHCSDAHMAYVCPKCGSILSPSISSLE 1182
Query 579 ADLQRLAFECKLCGNSNKISQVYIPYACKLLLQELTSMCIYPKLVL 624
A+ +R C +C + K+ V IPY + + EL +M I KL L
Sbjct 1183 ANTKRQVSICTICQVNCKL--VTIPYVLRYVANELATMNIGIKLHL 1226
> tgo:TGME49_097530 DNA-directed RNA polymerase I subunit RPA2,
putative (EC:2.7.7.6); K03002 DNA-directed RNA polymerase
I subunit RPA2 [EC:2.7.7.6]
Length=1388
Score = 314 bits (804), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 190/555 (34%), Positives = 274/555 (49%), Gaps = 90/555 (16%)
Query 139 IPYTHCEIHPSLILGVCASIIPFPDHNQSPRNVYQSAMGKQAMGVYTTNFNLRLDTLAHL 198
+ Y + E+ S L + AS+ P+ HNQSPRN+YQ M KQ MG + R D A+
Sbjct 828 VKYEYVELKSSAFLSIAASLTPYSHHNQSPRNIYQCQMLKQTMGTPFHSIPFRHDNKAYR 887
Query 199 LYYPQKPLVCTRAMEHLKFRELPAGINTIVAILCYSGYNQEDSLIMNRNSIDRGLFRSLF 258
L PQ+PLV T F + P+G+N +VA++CY+G++ ED++I+N+ S++RG F
Sbjct 888 LITPQRPLVRTEDYRRFDFDDYPSGVNAVVAVMCYTGFDMEDAMILNKGSMERGAFHGCV 947
Query 259 CRTYCAEEKQQGSMIVEGFEQPNPETTSGMKRGDYSKLDTDGLVEPGSRVLGDD----VI 314
++ + + Q + R + LD DG G+++ + V
Sbjct 948 YKSKVIDAAPASARAGAA-SQYTFGNVNEFGRKHIATLDGDGFPAIGAKIEKGNTYCRVQ 1006
Query 315 VGKTSPNFDDNDPLAPPGAEANLSKTKKDCSLCLRSSESGVVDTV------------MLS 362
+S +F N + KD E+ VD V +
Sbjct 1007 TSSSSSSFASN----------GIQHAYKD-------GETAYVDGVTFISPPDAAHERLAK 1049
Query 363 VNSKGSRFVKVKVRSVRIPQTGDKFASRHGQKGTIGITYRQEDMPFTEDGVVPDLLMNPH 422
KG R +++R VR P GDKFASRHGQKG + + + EDMPFTE G+VPD+L NPH
Sbjct 1050 SGLKGCR-ASLRLRCVRKPVIGDKFASRHGQKGILSMLWPHEDMPFTESGLVPDILFNPH 1108
Query 423 AVPSRMTIGHLVECLLGKTAAIIGGEGDATPFNDYT------------------------ 458
PSRMTIG L+E + GK AA+ G DATPF ++
Sbjct 1109 GFPSRMTIGMLIESMAGKAAAVHGAYQDATPFREFPPQSADGKNKWVDQGGYHGWVKRGE 1168
Query 459 ------------------VSWIAGELHRLGFERHGNERLYHGHTGLHMPSLIFIGPTYYQ 500
V + L R G++ +G E LY G G+ + + IF G YYQ
Sbjct 1169 RYRTPEEERQAQDEPETPVDYFGKALMRAGYQYYGTEELYSGVYGVPLTAHIFTGLIYYQ 1228
Query 501 RLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFGEMERDCMISHGAARMLKERFFD 560
RL+HMV DK RA GPV ALT QP++G+ R GG+RFGEMERD +ISHGAA +L++R
Sbjct 1229 RLRHMVTDKHQVRATGPVDALTHQPVKGRKRHGGVRFGEMERDALISHGAAALLQDRLLH 1288
Query 561 QSDAYRIHCCEICGTMC-----------VADLQRLAFECKLCGNSNKISQVYIPYACKLL 609
SDA++ CC CG++ A +R C++C ++ + +PY + L
Sbjct 1289 CSDAHKTFCCPSCGSILTPSAVPNLRGRTAGGKRAVPFCRVCQVPCRL--IMVPYVFRYL 1346
Query 610 LQELTSMCIYPKLVL 624
EL +M + +L L
Sbjct 1347 ANELAAMNVTIRLKL 1361
> ath:AT1G29940 NRPA2; NRPA2; DNA binding / DNA-directed RNA polymerase/
ribonucleoside binding; K03002 DNA-directed RNA polymerase
I subunit RPA2 [EC:2.7.7.6]
Length=1178
Score = 301 bits (771), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 178/521 (34%), Positives = 264/521 (50%), Gaps = 59/521 (11%)
Query 142 THCEIHPSLILGVCASIIPFPDHNQSPRNVYQSAMGKQAMGVYTTNFNLRLDTLAHLLYY 201
TH EIHP+ ++ V A++ P+ DHNQSPRN+YQ M KQ M T R D + L
Sbjct 675 THEEIHPTGMISVVANLTPWSDHNQSPRNMYQCQMAKQTMAYSTQALQFRADQKIYHLQT 734
Query 202 PQKPLVCTRAMEHLKFRELPAGINTIVAILCYSGYNQEDSLIMNRNSIDRGLFRSLFCRT 261
PQ P+V T+ E P G N IVA+L ++G++ ED++I+N++S++RG+ +T
Sbjct 735 PQSPVVRTKTYTTYSIDENPTGTNAIVAVLAHTGFDMEDAMILNKSSVERGMCHGQIYQT 794
Query 262 YCAEEKQQGSMIVEGFEQPNPETTSGMKRGDYSKLDTDGLVEPGSRVLGDDVIVGKTSPN 321
+ Q S F+ + + ++ ++D DGL G ++ D+
Sbjct 795 ENIDLSDQNSR----FDSGSKSFRRSTNKAEHFRIDADGLPSVGQKLYPDE--------- 841
Query 322 FDDNDPLAPPGAEANLSKTKKDCSLCLRSSESGVVDTVMLSVNSKG-SRFVKVKVRSVRI 380
P T K + + ++ +VD V + + SK + ++ R R
Sbjct 842 ---------PYCSIYDEVTNKTRHMKRKGTDPVIVDFVSVDMKSKKHPQRANIRFRHARN 892
Query 381 PQTGDKFASRHGQKGTIGITYRQEDMPFTE-DGVVPDLLMNPHAVPSRMTIGHLVECLLG 439
P GDKF+SRHGQKG + DMPF G+ PDL++NPHA PSRMTI L+E +
Sbjct 893 PIIGDKFSSRHGQKGVCSQLWPDIDMPFNGVTGMRPDLIINPHAFPSRMTIAMLLESIAA 952
Query 440 KTAAIIGGEGDATPFNDYT--------------VSWIAGELHRLGFERHGNERLYHGHTG 485
K ++ G DATPF D V + L GF +G E LY G+ G
Sbjct 953 KGGSLHGKFVDATPFRDAVKKTNGEEESKSSLLVDDLGSMLKEKGFNHYGTETLYSGYLG 1012
Query 486 LHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFGEMERDCM 545
+ + IF+GP YYQRL+HMV DK R+ G V LT QP++G+ R GG+RFGEMERD +
Sbjct 1013 VELKCEIFMGPVYYQRLRHMVSDKFQVRSTGQVDQLTHQPIKGRKRGGGIRFGEMERDSL 1072
Query 546 ISHGAARMLKERFFDQSDAYRIHCCEICGTMCVADL-----QRLAFE------------- 587
++HGA+ +L +R SD + C +CG++ + + ++L E
Sbjct 1073 LAHGASYLLHDRLHTSSDHHIADVCSLCGSLLTSSVVNVQQKKLIQEIGKLPPGRTPKKV 1132
Query 588 -CKLCGNSNKISQVYIPYACKLLLQELTSMCIYPKLVLQVA 627
C C S + V +PY + L EL SM I K+ LQ++
Sbjct 1133 TCYSCKTSKGMETVAMPYVFRYLAAELASMNI--KMTLQLS 1171
> cel:F14B4.3 hypothetical protein; K03002 DNA-directed RNA polymerase
I subunit RPA2 [EC:2.7.7.6]
Length=1127
Score = 300 bits (769), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 192/600 (32%), Positives = 290/600 (48%), Gaps = 100/600 (16%)
Query 57 VKIFTDAGRAMRPLYVVDSDTGQLRIRKADVDKVRSMVGTSEKGAGWNHLMSCGVIEYID 116
+ I +DAGR +RP +R +D V +GT E+ + V+ +D
Sbjct 589 IYILSDAGRLIRP------------VRNLAMDAVEH-IGTFEQ-------VYLSVV--LD 626
Query 117 CEEEETSMVAMFHKDLSEKGKSIPYTHCEIHPSLILGVCASIIPFPDHNQSPRNVYQSAM 176
EE E + H E+HPS + ++IPFPDHNQSPRNVYQ M
Sbjct 627 PEEAEPGVT----------------MHQELHPSCLFSFAGNLIPFPDHNQSPRNVYQCQM 670
Query 177 GKQAMGVYTTNFNLRLDTLAHLLYYPQKPLVCTRAMEHLKFRELPAGINTIVAILCYSGY 236
GKQ MG ++ R D + L +PQ+P++ A E + E P G N VA++ Y+GY
Sbjct 671 GKQTMGTAVHAWHSRADNKMYRLQFPQQPMLKLEAYEKYEMDEYPLGTNACVAVISYTGY 730
Query 237 NQEDSLIMNRNSIDRGLFRSLFC---RTYCAEEKQQGSMIVEGFEQPNPETTSGMKRGDY 293
+ ED++ +N+ S RG R E+++ ++ NP R +
Sbjct 731 DMEDAMTINKASYQRGFAHGTVIKVERINLVTERERKTIFYR-----NP-------REEI 778
Query 294 SKLDTDGLVEPGSRVLGDDVIVGKTSPNFDDNDPLAPPGAEANLSKTKK----DCSLCLR 349
+ DGL PG R D+V + N + D +T K + + C
Sbjct 779 KTVGPDGLPIPGRRYFLDEVYY--VTFNMETGD-----------FRTHKFHYAEPAYC-- 823
Query 350 SSESGVVDTVMLSVNSKGSRFVKVKVRSVRIPQTGDKFASRHGQKGTIGITYRQEDMPFT 409
G+V V G++ ++ R R P GDKFASRHGQKG + E +PF+
Sbjct 824 ----GLVRIVEQGEGDSGAKHALIQWRIERNPIIGDKFASRHGQKGINSFLWPVESLPFS 879
Query 410 EDGVVPDLLMNPHAVPSRMTIGHLVECLLGKTAAIIGGEGDATPF----NDYTVSWIAGE 465
E G+VPD++ NPH PSRMTIG ++E + GK AA G DA+PF ++ ++
Sbjct 880 ETGMVPDIIFNPHGFPSRMTIGMMIESMAGKAAATHGENYDASPFVFNEDNTAINHFGEL 939
Query 466 LHRLGFERHGNERLYHGHTGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQP 525
L + G+ +GNE Y G G M IF G YYQRL+HM+ DK RA GP+ +T QP
Sbjct 940 LTKAGYNYYGNETFYSGVDGRQMEMQIFFGIVYYQRLRHMIADKFQVRATGPIDPITHQP 999
Query 526 MEGKSREGGLRFGEMERDCMISHGAARMLKERFFDQSDAYRIHCCEICGTMCVA------ 579
++G+ + GG+RFGEMERD +I+HG + +L++R + SD + C CG++
Sbjct 1000 VKGRKKGGGIRFGEMERDAIIAHGTSFVLQDRLLNCSDRDVAYACRRCGSLLSVLMSSRA 1059
Query 580 ----------DLQRLAF----ECKLCGNSNKISQVYIPYACKLLLQELTSMCIYPKLVLQ 625
D + L + C+ C +++ + +P + L EL +M + KL ++
Sbjct 1060 GSHLLKKKRKDDEPLDYTETQRCRTCDKDDQVFLLQVPRVFRYLTAELAAMNVKIKLGIE 1119
> sce:YPR010C RPA135, RPA2, RRN2, SRP3; A135 (EC:2.7.7.6); K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]
Length=1203
Score = 298 bits (763), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 171/451 (37%), Positives = 244/451 (54%), Gaps = 35/451 (7%)
Query 141 YTHCEIHPSLILGVCASIIPFPDHNQSPRNVYQSAMGKQAMGVYTTNFNLRLDTLAHLLY 200
+TH E P+ IL + A++ PF D NQSPRN+YQ MGKQ MG R D + L
Sbjct 686 HTHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQ 745
Query 201 YPQKPLVCTRAMEHLKFRELPAGINTIVAILCYSGYNQEDSLIMNRNSIDRGLFRSLFCR 260
Q P+V + P G N +VA++ Y+GY+ +D++I+N+++ +RG +
Sbjct 746 TGQTPIVKANLYDDYGMDNFPNGFNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYK 805
Query 261 TY---CAEEKQQGSMIVEGFEQPNPETTSGMKRGDYSKLDTDGLVEPGSRVLGDDVIVGK 317
T A + +G I + F N E + KLD DGL G+ V D I
Sbjct 806 TEKVDLALNRNRGDPITQHFGFGNDE----WPKEWLEKLDEDGLPYIGTYVEEGDPICAY 861
Query 318 TSPNFDDNDPLAPPGAEANLSKTKKDCSLCLRSSESGVVDTVMLSVNSKGSRF-----VK 372
FDD L+KTK SSE ++ V L + + ++F V
Sbjct 862 ----FDDT-----------LNKTKIKT---YHSSEPAYIEEVNL-IGDESNKFQELQTVS 902
Query 373 VKVRSVRIPQTGDKFASRHGQKGTIGITYRQEDMPFTEDGVVPDLLMNPHAVPSRMTIGH 432
+K R R PQ GDKF+SRHGQKG + DMPF+E G+ PD+++NPHA PSRMTIG
Sbjct 903 IKYRIRRTPQIGDKFSSRHGQKGVCSRKWPTIDMPFSETGIQPDIIINPHAFPSRMTIGM 962
Query 433 LVECLLGKTAAIIGGEGDATPF----NDYTVSWIAGELHRLGFERHGNERLYHGHTGLHM 488
VE L GK A+ G D+TP+ +D + +L + G+ HGNE +Y G TG +
Sbjct 963 FVESLAGKAGALHGIAQDSTPWIFNEDDTPADYFGEQLAKAGYNYHGNEPMYSGATGEEL 1022
Query 489 PSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFGEMERDCMISH 548
+ I++G YYQRL+HMV+DK R+ GPV +LT QP++G+ R GG+R GEMERD +I H
Sbjct 1023 RADIYVGVVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGH 1082
Query 549 GAARMLKERFFDQSDAYRIHCCEICGTMCVA 579
G + +L++R + SD + C CG++
Sbjct 1083 GTSFLLQDRLLNSSDYTQASVCRECGSILTT 1113
> pfa:PFL0330c DNA-directed RNA polymerase III subunit, putative
(EC:2.7.7.6); K03021 DNA-directed RNA polymerase III subunit
RPC2 [EC:2.7.7.6]
Length=1450
Score = 283 bits (723), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 146/334 (43%), Positives = 201/334 (60%), Gaps = 11/334 (3%)
Query 293 YSKLDTDGLVEPGSRVLGDDVIVGKTSP-NFDDNDPLAPPGAEANLSKTKKDCSLCLRSS 351
Y LD DG+ G + + V K SP N D+ + +++ K + + +S
Sbjct 1125 YHSLDMDGVASIGYLIKEGQLYVNKFSPKNIKDH---VKDIGKVDINDFKIN-EIKYKSV 1180
Query 352 ESGVVDTVMLSVNSKGSRFVKVKVRSVRIPQTGDKFASRHGQKGTIGITYRQEDMPFTED 411
+D ++ + NS+G + K+ +R R+P+ GDKF+SRHGQKG +G+ QEDMPFTE
Sbjct 1181 YPSYIDKIIFTENSEGLKLYKIIMRQTRLPELGDKFSSRHGQKGVVGLLVNQEDMPFTES 1240
Query 412 GVVPDLLMNPHAVPSRMTIGHLVECLLGKTAAIIGGEGDATPFNDYTVSWIAGELHRLGF 471
G+ PDL+MNPH PSRMT+G L+E + K A + G + F+ IA L R GF
Sbjct 1241 GICPDLIMNPHGFPSRMTVGKLLELVASKAAVMDGEYKYGSIFSGTPFEEIAEILFRYGF 1300
Query 472 ERHGNERLYHGHTGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSR 531
E LY G TG + + IF+GP YYQ+LKHMV DKIHARARGP LTRQP EG+S+
Sbjct 1301 NCSSKELLYSGLTGEPLETYIFMGPIYYQKLKHMVQDKIHARARGPRQLLTRQPTEGRSK 1360
Query 532 EGGLRFGEMERDCMISHGAARMLKERFFDQSDAYRIHCCEICGTMCVADLQRLAFECKLC 591
EGGLR GEMERDC+I++G + +L ER SD ++ CE CG M DL C C
Sbjct 1361 EGGLRLGEMERDCLIAYGVSNLLLERLMLSSDVCNVYICEDCGMMGY-DLY-----CTFC 1414
Query 592 GNSNKISQVYIPYACKLLLQELTSMCIYPKLVLQ 625
+K + +PYACKLL QEL +M ++PK++++
Sbjct 1415 KKCDKNIVIQMPYACKLLFQELQTMNVFPKIIVK 1448
Score = 184 bits (468), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 99/257 (38%), Positives = 147/257 (57%), Gaps = 15/257 (5%)
Query 13 VFINGDWAGCFDEAETLCNTLKEIRRKGHIRNDTSIVRDIINREVKIFTDAGRAMRPLYV 72
V +NG G + ++ +RR G I SI + ++ + I TD GR RPL +
Sbjct 785 VILNGILLGVHKRPQKFMQRIRYLRRYGKIGQFVSIYDNFLHNAIYISTDGGRLCRPLII 844
Query 73 VDSDTGQLRIRKADVDKVRSMVGTSEKGA-GWNHLMSCGVIEYIDCEEEETSMVAMFHKD 131
+++ +L + + E G + L+ VIE+ID E+ ++A+ D
Sbjct 845 IENGKSKL---------LPQHIKALENGTINFFDLLKSSVIEWIDVNEQNNLLIALNESD 895
Query 132 LSEKGKSIPYTHCEIHPSLILGVCASIIPFPDHNQSPRNVYQSAMGKQAMGVYTTNFNLR 191
+S + TH EI P ILGV A +IP+P+HNQSPRN YQ AMGKQA+G N +R
Sbjct 896 IS-----LSTTHLEIDPLTILGVVAGLIPYPNHNQSPRNTYQCAMGKQAIGAIGYNQFVR 950
Query 192 LDTLAHLLYYPQKPLVCTRAMEHLKFRELPAGINTIVAILCYSGYNQEDSLIMNRNSIDR 251
DTL +LL YPQKPLV ++ +E + F +LPAG N IVA++ + GY+ ED+++MN++SIDR
Sbjct 951 CDTLLYLLVYPQKPLVKSKTIEFINFEKLPAGQNAIVAVMSFCGYDIEDAIVMNKSSIDR 1010
Query 252 GLFRSLFCRTYCAEEKQ 268
G R + R + E K+
Sbjct 1011 GFGRCMSLRKHSVELKK 1027
> pfa:PF11_0358 DNA-directed RNA polymerase 1, subunit 2, putative;
K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]
Length=1517
Score = 208 bits (530), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 139/388 (35%), Positives = 196/388 (50%), Gaps = 28/388 (7%)
Query 74 DSDTGQLRIRKADVDKVRSMVGTSEKGAGWNHLMSCGVIEYIDCEEEETSMVAMFHKDLS 133
D D G D + S+ +G ++ MS YID +E + D+
Sbjct 873 DYDYGYDSNSDGDSKSNSNFDSKSDNISGSDNNMSTTT--YIDSDEN-------INIDMY 923
Query 134 EKGKSIP--YTHCEIHPSLILGVCASIIPFPDHNQSPRNVYQSAMGKQAMGVYTTNFNLR 191
E+ IP + + E+ + L AS+ PF DHNQSPRN+YQ M KQ MG+ + N
Sbjct 924 EQ---IPQKFEYMELKETSFLSFLASLTPFSDHNQSPRNIYQCQMLKQTMGIQSLNNVYT 980
Query 192 LDTLAHLLYYPQKPLVCTRAMEHLKFRELPAGINTIVAILCYSGYNQEDSLIMNRNSIDR 251
+ + PQ PLV TR E P+G N +VAIL Y+GY+ ED+LI+N+ S DR
Sbjct 981 FTNKIYRMITPQFPLVVTRDYEFYGVDNFPSGTNAVVAILAYTGYDMEDALIINKASADR 1040
Query 252 GLFRSLFCRTYCAEEKQQGSMIVEGFEQPNPETTSGMKRGDYSKLDTDGLV-EPGSRVLG 310
G+FR+ +T + ++ G E N + ++ + +K + L E + L
Sbjct 1041 GIFRTHIYKTEFIDLQKVG-------ESSNFVFGNNIRYLNNNKNNNKNLAYENKGKFLN 1093
Query 311 DDVIVGKTSPNFDDNDPLAPPGAEANLSKTKKDCSLCLRSSESGVVDTVMLSVNSKGSRF 370
D + + PL + N T + R+ VD V + N+
Sbjct 1094 KDGLPC-VQQKITEGSPLYSYINKGNELTTYE----SFRNHGEYFVDFVSIGKNNSNQVA 1148
Query 371 VKVKVRSVRIPQTGDKFASRHGQKGTIGITYRQEDMPFTEDGVVPDLLMNPHAVPSRMTI 430
V VK+RS R PQ GDKFASRHGQKG + + QEDMPF E G+VPD++ NPH +PSRMTI
Sbjct 1149 V-VKLRSTRQPQVGDKFASRHGQKGVVSRLFPQEDMPFAESGIVPDIIFNPHGIPSRMTI 1207
Query 431 GHLVECLLGKTAAIIGGEGDATPFNDYT 458
G L+E + GK A++ G DATPF YT
Sbjct 1208 GMLIESICGKAASLYGKRIDATPFRKYT 1235
Score = 125 bits (313), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 102/195 (52%), Gaps = 20/195 (10%)
Query 448 EGDATPFNDYTVSWIAGELHRLGFERHGNERLYHGHTGLHMPSLIFIGPTYYQRLKHMVD 507
E A D + + A L G++ +G E LY G G+ + + IFIG YYQRL+HM
Sbjct 1317 EKKANITYDEKIDYFAKLLLNKGYDYYGTELLYSGIYGVPLQAHIFIGVIYYQRLRHMAY 1376
Query 508 DKIHARARGPVAALTRQPMEGKSREGGLRFGEMERDCMISHGAARMLKERFFDQSDAYRI 567
DK R GPV LT QP++GK + GG+R GEMERD +ISHG + ++ ERF SD +
Sbjct 1377 DKAQVRRTGPVCNLTHQPLKGKRKHGGIRVGEMERDGIISHGCSFVINERFLMSSDGHEC 1436
Query 568 HCCEICGTMCVADLQ-----------------RLAFECKLCGNSNKISQVYIPYACKLLL 610
C CG + +Q ++A CK C S KI ++IPY + LL
Sbjct 1437 FVCPKCGLILSPIMQFNTTGKIMKGRSIGGKSKMAV-CKSCDVSCKI--IFIPYVIRYLL 1493
Query 611 QELTSMCIYPKLVLQ 625
EL + + +L ++
Sbjct 1494 NELICLNVTIRLNMK 1508
> ath:ArthCp014 rpoB; RNA polymerase beta chain; K03043 DNA-directed
RNA polymerase subunit beta [EC:2.7.7.6]
Length=1072
Score = 162 bits (411), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 127/425 (29%), Positives = 191/425 (44%), Gaps = 46/425 (10%)
Query 219 ELPAGINTIVAILCYSGYNQEDSLIMNRNSIDRGLFRSLFCRTYCAEEKQQGSMIVEGFE 278
EL G N +VA + + GYN ED+++++ + ++ S R Y + Q + +G E
Sbjct 650 ELALGKNILVAYMPWEGYNFEDAVLISECLVYGDIYTSFHIRKY----EIQTHVTTQGPE 705
Query 279 QPNPETTSGMKRGDYSKLDTDGLVEPGSRVLGDDVIVGKTSPNFDDNDPLAPPG------ 332
+ E R LD +G+V GS V D++VGK +P AP
Sbjct 706 RITKEIPHLEGR-LLRNLDKNGIVMLGSWVETGDILVGKLTPQVAKESSYAPEDRLLRAI 764
Query 333 AEANLSKTKKDCSLCLRSSESGVVDTVMLSVNSKGSRF----VKVKVRSVRIPQTGDKFA 388
+S +K+ C L L G V V GS + ++V + R + GDK A
Sbjct 765 LGIQVSTSKETC-LKLPIGGRGRVIDVRWVQKKGGSSYNPEIIRVYISQKREIKVGDKVA 823
Query 389 SRHGQKGTIGITYRQEDMPFTEDGVVPDLLMNPHAVPSRMTIGHLVECLLGKTAAIIGGE 448
RHG KG I ++DMP+ +DG D++ NP VPSRM +G + EC LG +++
Sbjct 824 GRHGNKGIISKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRH 883
Query 449 GDATPFND---------------YTVSWIAGELHRLGFERHGNERLYHGHTGLHMPSLIF 493
PF++ Y S E G R++ G TG +
Sbjct 884 YRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVI 943
Query 494 IGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFGEMERDCMISHGAARM 553
IG Y +L H VDDKIH R+ G A +T+QP+ G+S++GG R GEME + G A +
Sbjct 944 IGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRSKQGGQRVGEMEVWALEGFGVAHI 1003
Query 554 LKERFFDQSDAYRIHCCEICGTMCVADLQRLAFECKLCGNSNKISQVYIPYACKLLLQEL 613
L+E +SD R E+ GT + G K P + +LL++EL
Sbjct 1004 LQEMLTYKSDHIRAR-QEVLGTTIIG------------GTIPKPEDA--PESFRLLVREL 1048
Query 614 TSMCI 618
S+ +
Sbjct 1049 RSLAL 1053
> eco:b3987 rpoB, ECK3978, ftsR, groN, JW3950, mbrD?, nitB, rif,
ron, sdgB, stl, stv, tabD, tabG; RNA polymerase, beta subunit
(EC:2.7.7.6); K03043 DNA-directed RNA polymerase subunit
beta [EC:2.7.7.6]
Length=1342
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/249 (34%), Positives = 117/249 (46%), Gaps = 54/249 (21%)
Query 369 RFVKVKVRSVRIPQTGDKFASRHGQKGTIGITYRQEDMPFTEDGVVPDLLMNPHAVPSRM 428
+ VKV + R Q GDK A RHG KG I EDMP+ E+G D+++NP VPSRM
Sbjct 1048 KIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRM 1107
Query 429 TIGHLVECLLGKTAAIIGGEGDA-------------------------------TPFNDY 457
IG ++E LG A IG + +A + F+D
Sbjct 1108 NIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDE 1167
Query 458 TVSWIA----------------------GELHRLG-FERHGNERLYHGHTGLHMPSLIFI 494
V +A EL +LG G RLY G TG + +
Sbjct 1168 EVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTV 1227
Query 495 GPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFGEMERDCMISHGAARML 554
G Y +L H+VDDK+HAR+ G + +T+QP+ GK++ GG RFGEME + ++GAA L
Sbjct 1228 GYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1287
Query 555 KERFFDQSD 563
+E +SD
Sbjct 1288 QEMLTVKSD 1296
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 13/106 (12%)
Query 219 ELPAGINTIVAILCYSGYNQEDSLIMNRNSIDRGLFRSLFCRTYCAEEKQQGSMIVEGFE 278
EL G N VA + ++GYN EDS++++ + F ++ + +
Sbjct 793 ELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDT--------- 843
Query 279 QPNPETTSG----MKRGDYSKLDTDGLVEPGSRVLGDDVIVGKTSP 320
+ PE + + SKLD G+V G+ V G D++VGK +P
Sbjct 844 KLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTP 889
> tpv:TP05_0028 DNA-directed RNA polymerase subunit beta (EC:2.7.7.6);
K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Length=1005
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 87/198 (43%), Gaps = 13/198 (6%)
Query 369 RFVKVKVRSVRIPQTGDKFASRHGQKGTIGITYRQEDMPFTEDGVVPDLLMNPHAVPSRM 428
RF K+ + I GDK RHG KG + D+P+T G+ P + +P +R+
Sbjct 755 RFFIFKIDRINI---GDKLCGRHGNKGVVSKIVDNIDLPYTFRGLCPYSITSPIGALARI 811
Query 429 TIGHLVECLLGKTAAI----IGGEGDATPFNDYTVSWIAGELHRLGFERHG------NER 478
+G +E G I + ++ Y+ ++ + L + +
Sbjct 812 NLGQFLEGSCGYFGLNFNCRIKAPINLYNYHLYSNMYLKNIFNSLNVYNNSYINFSIEKY 871
Query 479 LYHGHTGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFG 538
L TG + + + Y+ +L H K R G ++LT+QP++GK G +FG
Sbjct 872 LRDFKTGYQLKNFNLMLMPYFLKLMHTSKSKFQYRTVGKYSSLTQQPVKGKRVNGSQKFG 931
Query 539 EMERDCMISHGAARMLKE 556
EME + SHG+A ++E
Sbjct 932 EMEVWALESHGSAYTIRE 949
Score = 33.1 bits (74), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 0/43 (0%)
Query 215 LKFRELPAGINTIVAILCYSGYNQEDSLIMNRNSIDRGLFRSL 257
LK E G+N ++ Y+GY ED++++N+N I + S+
Sbjct 584 LKHSEFTLGVNNLLNYSFYNGYEHEDAIVINKNLIIEDILTSI 626
> tgo:TGME49_100670 hypothetical protein
Length=235
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 78/162 (48%), Gaps = 15/162 (9%)
Query 296 LDTDGLVEPGSRVLGDDVIVGK---TSPNFDDNDPLA-PPGAEANLSKTKKDCSLCLRSS 351
LD+ G+++ G ++L +++ K P + + KD SL +++
Sbjct 34 LDSLGIIKEGEKILTGSILLTKIKVAKPTYTYKSIFKLIYSIFGKTIRNIKDNSLYIQTG 93
Query 352 ESGVVDTV---MLSVNSK------GSRFVKVKVR--SVRIPQTGDKFASRHGQKGTIGIT 400
+SG V + ++++NS+ + ++K ++ R GDK R+G KG +
Sbjct 94 KSGRVSKIELFLVNINSRHKYKTYNNSYLKCRIFICKQRFLTVGDKLCGRYGNKGILSYI 153
Query 401 YRQEDMPFTEDGVVPDLLMNPHAVPSRMTIGHLVECLLGKTA 442
D+PF ++ PD+++ +PSRM +G L E L+GK +
Sbjct 154 AENADLPFLQNSFYPDIIVGALGIPSRMNLGQLFEALVGKIS 195
> bbo:BBOV_V000130 RNA polymerase beta subunit; K03043 DNA-directed
RNA polymerase subunit beta [EC:2.7.7.6]
Length=971
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 88/197 (44%), Gaps = 18/197 (9%)
Query 372 KVKVRSVRIPQTGDKFASRHGQKGTIGITYRQEDMPFTEDGVVPDLLMNPHAVPSRMTIG 431
K+ + S+ GDK RHG KGTI + P+T + +P+++ +P SRM +G
Sbjct 732 KLFLVSINNINVGDKLCGRHGNKGTISKIIEIPESPYTSEDKLPNIITSPIGAASRMNVG 791
Query 432 HLVECLLGKTAAIIGGEGDATPFNDYT--------VSWIAGELH----RLGFERHGNERL 479
+E +G T I +P N ++ V ++ +++ +L ++
Sbjct 792 QFIEGYIGNTCD-IDNVRIKSPINLHSSDMYSSLYVKSVSNKINNRYVKLKSSQNAVSVF 850
Query 480 YHGHTGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFGE 539
TG + Y+ +L H K R R + L Q + G+S+E +FGE
Sbjct 851 RDFKTGYKLKGFTHHVILYFFKLMHTSKSKF--RYRCSSSKLV-QYVHGESKEQ--KFGE 905
Query 540 MERDCMISHGAARMLKE 556
ME + +HGA+ LKE
Sbjct 906 MEVWSLEAHGASYNLKE 922
Lambda K H
0.321 0.137 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 31748152912
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
Posted date: Sep 17, 2011 2:57 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40