bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
164,496 sequences; 82,071,388 total letters
Query= Eten_1777_orf1
Length=189
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_025260 DNA-directed RNA polymerase II largest subun... 339 3e-93
bbo:BBOV_I003360 19.m02399; DNA-directed RNA polymerase II lar... 264 1e-70
tpv:TP03_0185 DNA-directed RNA polymerase II largest subunit (... 254 1e-67
pfa:PFC0805w DNA-directed RNA polymerase II, putative; K03006 ... 243 3e-64
cpv:cgd3_2620 DNA-directed RNA polymerase,possible RNA polymer... 234 2e-61
ath:AT4G35800 NRPB1; NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); ... 214 2e-55
cel:F36A4.7 ama-1; AMAnitin resistant family member (ama-1); K... 189 4e-48
dre:553347 polr2a, im:7136071; polymerase (RNA) II (DNA direct... 187 2e-47
hsa:5430 POLR2A, MGC75453, POLR2, POLRA, RPB1, RPBh1, RPO2, RP... 184 1e-46
mmu:20020 Polr2a, 220kDa, Rpb1, Rpo2-1; polymerase (RNA) II (D... 184 2e-46
sce:YDL140C RPO21, RPB1, RPB220, SUA8; B220 (EC:2.7.7.6); K030... 178 1e-44
dre:100334761 DNA-directed RNA polymerase II A-like 148 1e-35
dre:100334143 polymerase (RNA) III (DNA directed) polypeptide ... 123 4e-28
mmu:218832 Polr3a, 9330175N20Rik, BC053071, MGC62420, RPC1, RP... 122 5e-28
hsa:11128 POLR3A, RPC1, RPC155, hRPC155; polymerase (RNA) III ... 122 7e-28
tgo:TGME49_106290 DNA-directed RNA polymerase III largest subu... 117 2e-26
cel:C42D4.8 rpc-1; RNA Polymerase, Class III (C) family member... 117 3e-26
sce:YOR116C RPO31, RPC1, RPC160; C160 (EC:2.7.7.6); K03018 DNA... 113 3e-25
cpv:cgd6_3290 DNA-directed RNA polymerase III C1 subunit ; K03... 113 5e-25
pfa:PF13_0150 DNA-directed RNA polymerase 3 largest subunit (E... 105 7e-23
tpv:TP04_0648 DNA-directed RNA polymerase III largest subunit ... 103 3e-22
bbo:BBOV_III007400 17.m07648; RNA polymerase Rpb1, domain cont... 94.0 3e-19
ath:AT5G60040 NRPC1; NRPC1; DNA binding / DNA-directed RNA pol... 92.8 6e-19
hsa:25885 POLR1A, A190, DKFZp586M0122, FLJ21915, MGC87965, RPA... 77.0 4e-14
sce:YOR341W RPA190, RRN1; A190 (EC:2.7.7.6); K02999 DNA-direct... 76.3 6e-14
xla:398274 polr1a; polymerase (RNA) I polypeptide A, 194kDa; K... 75.1 1e-13
dre:327078 polr1a, cb934, fa26a03, sb:cb935, wu:fa26a03; polym... 74.7 2e-13
mmu:20019 Polr1a, 194kDa, 3010014K16Rik, RPA194, Rpo1-4, mRPA1... 73.9 3e-13
cel:Y48E1A.1 hypothetical protein; K02999 DNA-directed RNA pol... 62.0 1e-09
ath:AT3G57660 NRPA1; NRPA1; DNA binding / DNA-directed RNA pol... 56.6 5e-08
cpv:cgd5_730 DNA-directed RNA polymerase I ; K02999 DNA-direct... 47.8 2e-05
bbo:BBOV_IV009600 23.m06317; DNA directed RNA polymerase (EC:2... 47.0 4e-05
tpv:TP01_0809 RNA polymerase large subunit; K02999 DNA-directe... 44.3 3e-04
ath:AT1G63020 NRPD1A; NRPD1A (NUCLEAR RNA POLYMERASE D 1A); DN... 43.1 6e-04
tgo:TGME49_044880 DNA-directed RNA polymerase I largest subuni... 42.0 0.001
pfa:PFE0465c RNA polymerase I; K02999 DNA-directed RNA polymer... 38.9 0.011
ath:AT2G40030 NRPD1B; NRPD1B; DNA binding / DNA-directed RNA p... 34.3 0.25
xla:100322880 robo3, hgpps, hgps, rbig1, rig1; roundabout, axo... 32.3 1.0
pfa:PF14_0725 tubulin, putative; K10391 tubulin epsilon 30.8 2.6
cel:Y43F4B.6 klp-19; Kinesin-Like Protein family member (klp-1... 29.3 9.1
> tgo:TGME49_025260 DNA-directed RNA polymerase II largest subunit,
putative (EC:2.7.7.6 3.5.1.16); K03006 DNA-directed RNA
polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1892
Score = 339 bits (870), Expect = 3e-93, Method: Composition-based stats.
Identities = 160/189 (84%), Positives = 174/189 (92%), Gaps = 0/189 (0%)
Query 1 KKENLFVSERDERVIIRQGELLAGKICKKTVGSSSGSLIHLLWNEAGPERTKDFLGALQK 60
KKENLF+SERDERVIIRQGELLAGKICKK VGS+SGSLIHLLW EAGPERTKDFL LQK
Sbjct 618 KKENLFLSERDERVIIRQGELLAGKICKKIVGSASGSLIHLLWLEAGPERTKDFLSTLQK 677
Query 61 LVNFWLLHQGFTVGCSDIITSQETCKKVEEILKEAKDEVAHLTRLAHQGRLEAQPGKSLR 120
L N+WLLHQGFTVGC DII ++ET +KV +IL +AK EV L RLAH+GRLE+QPGKSLR
Sbjct 678 LTNYWLLHQGFTVGCKDIIANEETNEKVRDILDQAKKEVDKLIRLAHRGRLESQPGKSLR 737
Query 121 ESFEARVNKELNAAREKSGKIASEQLDESNNIMAMVLAGSKGSTINISQIMACVGQQNVE 180
ESFEARVNKELN+ARE+SGK+A+E LDESNNIMAMVLAGSKGSTINISQIMACVGQQNVE
Sbjct 738 ESFEARVNKELNSARERSGKVAAESLDESNNIMAMVLAGSKGSTINISQIMACVGQQNVE 797
Query 181 GKRIPFGFN 189
GKRIPFGFN
Sbjct 798 GKRIPFGFN 806
> bbo:BBOV_I003360 19.m02399; DNA-directed RNA polymerase II largest
subunit (EC:2.7.7.6); K03006 DNA-directed RNA polymerase
II subunit RPB1 [EC:2.7.7.6]
Length=1746
Score = 264 bits (675), Expect = 1e-70, Method: Composition-based stats.
Identities = 125/188 (66%), Positives = 153/188 (81%), Gaps = 0/188 (0%)
Query 1 KKENLFVSERDERVIIRQGELLAGKICKKTVGSSSGSLIHLLWNEAGPERTKDFLGALQK 60
+ +N + S D +VII + E L+G ICKKTVG+SSGSLIH+LW+EAGP+R KDFL LQK
Sbjct 605 ENDNPYCSANDSKVIISKNEHLSGIICKKTVGTSSGSLIHVLWHEAGPDRCKDFLTTLQK 664
Query 61 LVNFWLLHQGFTVGCSDIITSQETCKKVEEILKEAKDEVAHLTRLAHQGRLEAQPGKSLR 120
+VN WL++ GFTV CSDI+ S+ T +V EIL+ +K EV L LA +G+L+ QPGKSL
Sbjct 665 VVNNWLVYNGFTVSCSDIMASESTLTQVAEILERSKKEVQRLVGLAQRGKLKCQPGKSLF 724
Query 121 ESFEARVNKELNAAREKSGKIASEQLDESNNIMAMVLAGSKGSTINISQIMACVGQQNVE 180
ESFEARVNKELN ARE+SG IA++ LDE NNI+AMV +GSKGSTINISQI+ACVGQQNVE
Sbjct 725 ESFEARVNKELNEAREQSGTIAAKSLDERNNILAMVNSGSKGSTINISQIIACVGQQNVE 784
Query 181 GKRIPFGF 188
GKR+PFGF
Sbjct 785 GKRVPFGF 792
> tpv:TP03_0185 DNA-directed RNA polymerase II largest subunit
(EC:2.7.7.6); K03006 DNA-directed RNA polymerase II subunit
RPB1 [EC:2.7.7.6]
Length=1681
Score = 254 bits (649), Expect = 1e-67, Method: Composition-based stats.
Identities = 124/187 (66%), Positives = 146/187 (78%), Gaps = 0/187 (0%)
Query 2 KENLFVSERDERVIIRQGELLAGKICKKTVGSSSGSLIHLLWNEAGPERTKDFLGALQKL 61
K+NL S D RVIIR+ E ++G ICKKTVG SSGSLIH+LW+EAGPE+ +DFL LQK+
Sbjct 606 KDNLNCSINDSRVIIRKNEHISGIICKKTVGCSSGSLIHILWHEAGPEKCRDFLTTLQKV 665
Query 62 VNFWLLHQGFTVGCSDIITSQETCKKVEEILKEAKDEVAHLTRLAHQGRLEAQPGKSLRE 121
VN W L GFTV CSDI S+ T KV IL ++K EV L A +G+L+ QPGKSL E
Sbjct 666 VNNWFLQIGFTVSCSDICCSESTLNKVSRILDKSKKEVQKLVLQAQKGKLKCQPGKSLFE 725
Query 122 SFEARVNKELNAAREKSGKIASEQLDESNNIMAMVLAGSKGSTINISQIMACVGQQNVEG 181
SFEARVNKELN ARE+SG I + L+ SNNI++MV +GSKGSTINISQI+ACVGQQNVEG
Sbjct 726 SFEARVNKELNDAREQSGSIVASSLNLSNNILSMVNSGSKGSTINISQIIACVGQQNVEG 785
Query 182 KRIPFGF 188
KRIPFGF
Sbjct 786 KRIPFGF 792
> pfa:PFC0805w DNA-directed RNA polymerase II, putative; K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=2457
Score = 243 bits (619), Expect = 3e-64, Method: Composition-based stats.
Identities = 125/189 (66%), Positives = 148/189 (78%), Gaps = 0/189 (0%)
Query 1 KKENLFVSERDERVIIRQGELLAGKICKKTVGSSSGSLIHLLWNEAGPERTKDFLGALQK 60
K +N + S D +VII+ ELL+G ICK+TVGSSSGSLIH+LW+E GP++TKDFL ALQK
Sbjct 748 KDDNPYCSINDGKVIIKNNELLSGIICKRTVGSSSGSLIHVLWHEMGPDKTKDFLSALQK 807
Query 61 LVNFWLLHQGFTVGCSDIITSQETCKKVEEILKEAKDEVAHLTRLAHQGRLEAQPGKSLR 120
+ N WL + GFTV CSDII S + KV EIL ++K EV+ L A +G LE QPGKSL
Sbjct 808 VTNNWLEYVGFTVSCSDIIASNKVLGKVREILDKSKSEVSKLVEKAQKGELECQPGKSLY 867
Query 121 ESFEARVNKELNAAREKSGKIASEQLDESNNIMAMVLAGSKGSTINISQIMACVGQQNVE 180
ESFE RVN ELN ARE +GK+ASE LDE NNI +MV +GSKGS INISQI++CVGQQNVE
Sbjct 868 ESFETRVNNELNCAREMAGKVASESLDERNNIFSMVASGSKGSIINISQIISCVGQQNVE 927
Query 181 GKRIPFGFN 189
GKRIPFGFN
Sbjct 928 GKRIPFGFN 936
> cpv:cgd3_2620 DNA-directed RNA polymerase,possible RNA polymerase
A/beta'/A'' subunit, long PHYSPTS repeat ; K03006 DNA-directed
RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1902
Score = 234 bits (596), Expect = 2e-61, Method: Composition-based stats.
Identities = 117/186 (62%), Positives = 141/186 (75%), Gaps = 1/186 (0%)
Query 4 NLFVSERDERVIIRQGELLAGKICKKTVGSSSGSLIHLLWNEAGPERTKDFLGALQKLVN 63
N ++SE D +VII++GE + G + KK GSSSGSLIH+LWNE GPE+T FL Q +VN
Sbjct 629 NPWISELDNQVIIQKGEHICGVLTKKIAGSSSGSLIHILWNEIGPEKTGLFLTYTQMVVN 688
Query 64 FWLLHQGFTVGCSDIITSQETCKKVEEILKEAKDEVAHLTRLAHQGRLEAQPGKSLRESF 123
WLL GFTVGC DI T +K+ L+ +K +V + R A +G+L+ QPGKSL ESF
Sbjct 689 TWLLEHGFTVGCQDIQPQNYTLEKIMNSLEGSKLQVQQIIRRAQKGKLDCQPGKSLIESF 748
Query 124 EARVNKELNAAREKSGKIASEQLDES-NNIMAMVLAGSKGSTINISQIMACVGQQNVEGK 182
EA+VN+ELN+ARE SG IA+E LD S NNI+AMV GSKGSTINISQIMACVGQQNVEGK
Sbjct 749 EAQVNQELNSARELSGTIATENLDSSKNNIVAMVQCGSKGSTINISQIMACVGQQNVEGK 808
Query 183 RIPFGF 188
RIPFGF
Sbjct 809 RIPFGF 814
> ath:AT4G35800 NRPB1; NRPB1 (RNA POLYMERASE II LARGE SUBUNIT);
DNA binding / DNA-directed RNA polymerase; K03006 DNA-directed
RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1840
Score = 214 bits (544), Expect = 2e-55, Method: Composition-based stats.
Identities = 99/187 (52%), Positives = 132/187 (70%), Gaps = 0/187 (0%)
Query 3 ENLFVSERDERVIIRQGELLAGKICKKTVGSSSGSLIHLLWNEAGPERTKDFLGALQKLV 62
E F++ D +V I +GELLAG +CKKT+G+S+GSL+H++W E GP+ + FLG Q LV
Sbjct 614 ETGFITPGDTQVRIERGELLAGTLCKKTLGTSNGSLVHVIWEEVGPDAARKFLGHTQWLV 673
Query 63 NFWLLHQGFTVGCSDIITSQETCKKVEEILKEAKDEVAHLTRLAHQGRLEAQPGKSLRES 122
N+WLL GFT+G D I T +K+ E + AK V L R L+ +PG+++R++
Sbjct 674 NYWLLQNGFTIGIGDTIADSSTMEKINETISNAKTAVKDLIRQFQGKELDPEPGRTMRDT 733
Query 123 FEARVNKELNAAREKSGKIASEQLDESNNIMAMVLAGSKGSTINISQIMACVGQQNVEGK 182
FE RVN+ LN AR+ +G A + L E+NN+ AMV AGSKGS INISQ+ ACVGQQNVEGK
Sbjct 734 FENRVNQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 793
Query 183 RIPFGFN 189
RIPFGF+
Sbjct 794 RIPFGFD 800
> cel:F36A4.7 ama-1; AMAnitin resistant family member (ama-1);
K03006 DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1852
Score = 189 bits (481), Expect = 4e-48, Method: Composition-based stats.
Identities = 88/183 (48%), Positives = 126/183 (68%), Gaps = 0/183 (0%)
Query 6 FVSERDERVIIRQGELLAGKICKKTVGSSSGSLIHLLWNEAGPERTKDFLGALQKLVNFW 65
++S D +VII GELL+G +C KTVG S+G+L+H++ E G E +F +Q ++N W
Sbjct 610 WISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVINAW 669
Query 66 LLHQGFTVGCSDIITSQETCKKVEEILKEAKDEVAHLTRLAHQGRLEAQPGKSLRESFEA 125
L+ +G T+G D I Q T ++ +++AK +V + AH LE PG +LR++FE
Sbjct 670 LIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTFEN 729
Query 126 RVNKELNAAREKSGKIASEQLDESNNIMAMVLAGSKGSTINISQIMACVGQQNVEGKRIP 185
+VN+ LN AR+++G A + L E NN +MV++GSKGS INISQ++ACVGQQNVEGKRIP
Sbjct 730 KVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQQNVEGKRIP 789
Query 186 FGF 188
FGF
Sbjct 790 FGF 792
> dre:553347 polr2a, im:7136071; polymerase (RNA) II (DNA directed)
polypeptide A; K03006 DNA-directed RNA polymerase II subunit
RPB1 [EC:2.7.7.6]
Length=1972
Score = 187 bits (474), Expect = 2e-47, Method: Composition-based stats.
Identities = 88/182 (48%), Positives = 127/182 (69%), Gaps = 0/182 (0%)
Query 7 VSERDERVIIRQGELLAGKICKKTVGSSSGSLIHLLWNEAGPERTKDFLGALQKLVNFWL 66
+S D +VI+ GEL+ G +CKK++G+S+GSL+H+ + E G + T+ F +Q +VN WL
Sbjct 618 ISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVVNNWL 677
Query 67 LHQGFTVGCSDIITSQETCKKVEEILKEAKDEVAHLTRLAHQGRLEAQPGKSLRESFEAR 126
L +G ++G D I + T + ++ +K+AK +V + AH LE PG +LR++FE +
Sbjct 678 LIEGHSIGIGDSIADKATYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQ 737
Query 127 VNKELNAAREKSGKIASEQLDESNNIMAMVLAGSKGSTINISQIMACVGQQNVEGKRIPF 186
VN+ LN AR+K+G A + L E NN +MV+AGSKGS INISQ++A VGQQNVEGKRIPF
Sbjct 738 VNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQNVEGKRIPF 797
Query 187 GF 188
GF
Sbjct 798 GF 799
> hsa:5430 POLR2A, MGC75453, POLR2, POLRA, RPB1, RPBh1, RPO2,
RPOL2, RpIILS, hRPB220, hsRPB1; polymerase (RNA) II (DNA directed)
polypeptide A, 220kDa (EC:2.7.7.6 2.7.7.48); K03006 DNA-directed
RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1970
Score = 184 bits (468), Expect = 1e-46, Method: Composition-based stats.
Identities = 85/182 (46%), Positives = 127/182 (69%), Gaps = 0/182 (0%)
Query 7 VSERDERVIIRQGELLAGKICKKTVGSSSGSLIHLLWNEAGPERTKDFLGALQKLVNFWL 66
+S D +V++ GEL+ G +CKK++G+S+GSL+H+ + E G + T+ F +Q ++N WL
Sbjct 621 ISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWL 680
Query 67 LHQGFTVGCSDIITSQETCKKVEEILKEAKDEVAHLTRLAHQGRLEAQPGKSLRESFEAR 126
L +G T+G D I +T + ++ +K+AK +V + AH LE PG +LR++FE +
Sbjct 681 LIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQ 740
Query 127 VNKELNAAREKSGKIASEQLDESNNIMAMVLAGSKGSTINISQIMACVGQQNVEGKRIPF 186
VN+ LN AR+K+G A + L E NN +MV++G+KGS INISQ++A VGQQNVEGKRIPF
Sbjct 741 VNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPF 800
Query 187 GF 188
GF
Sbjct 801 GF 802
> mmu:20020 Polr2a, 220kDa, Rpb1, Rpo2-1; polymerase (RNA) II
(DNA directed) polypeptide A (EC:2.7.7.6); K03006 DNA-directed
RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1932
Score = 184 bits (467), Expect = 2e-46, Method: Composition-based stats.
Identities = 85/182 (46%), Positives = 127/182 (69%), Gaps = 0/182 (0%)
Query 7 VSERDERVIIRQGELLAGKICKKTVGSSSGSLIHLLWNEAGPERTKDFLGALQKLVNFWL 66
+S D +V++ GEL+ G +CKK++G+S+GSL+H+ + E G + T+ F +Q ++N WL
Sbjct 621 ISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWL 680
Query 67 LHQGFTVGCSDIITSQETCKKVEEILKEAKDEVAHLTRLAHQGRLEAQPGKSLRESFEAR 126
L +G T+G D I +T + ++ +K+AK +V + AH LE PG +LR++FE +
Sbjct 681 LIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQ 740
Query 127 VNKELNAAREKSGKIASEQLDESNNIMAMVLAGSKGSTINISQIMACVGQQNVEGKRIPF 186
VN+ LN AR+K+G A + L E NN +MV++G+KGS INISQ++A VGQQNVEGKRIPF
Sbjct 741 VNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPF 800
Query 187 GF 188
GF
Sbjct 801 GF 802
> sce:YDL140C RPO21, RPB1, RPB220, SUA8; B220 (EC:2.7.7.6); K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1733
Score = 178 bits (451), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 89/183 (48%), Positives = 124/183 (67%), Gaps = 0/183 (0%)
Query 6 FVSERDERVIIRQGELLAGKICKKTVGSSSGSLIHLLWNEAGPERTKDFLGALQKLVNFW 65
+S +D ++I G+++ G + KKTVGSS+G LIH++ E GP+ G +QK+VNFW
Sbjct 597 LLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVNFW 656
Query 66 LLHQGFTVGCSDIITSQETCKKVEEILKEAKDEVAHLTRLAHQGRLEAQPGKSLRESFEA 125
LLH GF+ G D I T +++ E + EAK +V +T+ A L A+ G +LRESFE
Sbjct 657 LLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRESFED 716
Query 126 RVNKELNAAREKSGKIASEQLDESNNIMAMVLAGSKGSTINISQIMACVGQQNVEGKRIP 185
V + LN AR+K+G++A L + NN+ MV+AGSKGS INI+Q+ ACVGQQ+VEGKRI
Sbjct 717 NVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIA 776
Query 186 FGF 188
FGF
Sbjct 777 FGF 779
> dre:100334761 DNA-directed RNA polymerase II A-like
Length=780
Score = 148 bits (373), Expect = 1e-35, Method: Composition-based stats.
Identities = 72/163 (44%), Positives = 109/163 (66%), Gaps = 0/163 (0%)
Query 7 VSERDERVIIRQGELLAGKICKKTVGSSSGSLIHLLWNEAGPERTKDFLGALQKLVNFWL 66
+S D +VI+ GEL+ G +CKK++G+S+GSL+H+ + E G + T+ F +Q +VN WL
Sbjct 618 ISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVVNNWL 677
Query 67 LHQGFTVGCSDIITSQETCKKVEEILKEAKDEVAHLTRLAHQGRLEAQPGKSLRESFEAR 126
L +G ++G D I + T + ++ +K+AK +V + AH LE PG +LR++FE +
Sbjct 678 LIEGHSIGIGDSIADKATYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQ 737
Query 127 VNKELNAAREKSGKIASEQLDESNNIMAMVLAGSKGSTINISQ 169
VN+ LN AR+K+G A + L E NN +MV+AGSKGS INISQ
Sbjct 738 VNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQ 780
> dre:100334143 polymerase (RNA) III (DNA directed) polypeptide
A, 155kDa-like; K03018 DNA-directed RNA polymerase III subunit
RPC1 [EC:2.7.7.6]
Length=673
Score = 123 bits (309), Expect = 4e-28, Method: Composition-based stats.
Identities = 66/179 (36%), Positives = 103/179 (57%), Gaps = 1/179 (0%)
Query 11 DERVIIRQGELLAGKICKKTVGS-SSGSLIHLLWNEAGPERTKDFLGALQKLVNFWLLHQ 69
D V+I EL+ G + K T+GS S ++ ++L + G + D + L +L +L ++
Sbjct 22 DSFVVIHNSELMCGSMDKGTLGSGSKNNIFYILLRDWGQQEAADAMSRLARLAPVYLSNR 81
Query 70 GFTVGCSDIITSQETCKKVEEILKEAKDEVAHLTRLAHQGRLEAQPGKSLRESFEARVNK 129
GF++G D+ Q K +E+L ++ GRL+ QPG + E+ EA + K
Sbjct 82 GFSIGIGDVTPGQGLLKAKQELLDAGYEKCDEYIDALKTGRLQQQPGCTAEETLEALILK 141
Query 130 ELNAAREKSGKIASEQLDESNNIMAMVLAGSKGSTINISQIMACVGQQNVEGKRIPFGF 188
EL+ R+ +G +LD+SN+ + M L GSKGS INISQ++ACVGQQ + G R+P GF
Sbjct 142 ELSVIRDHAGSACLRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGF 200
> mmu:218832 Polr3a, 9330175N20Rik, BC053071, MGC62420, RPC1,
RPC155; polymerase (RNA) III (DNA directed) polypeptide A (EC:2.7.7.6);
K03018 DNA-directed RNA polymerase III subunit RPC1
[EC:2.7.7.6]
Length=1390
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 107/189 (56%), Gaps = 3/189 (1%)
Query 1 KKENLFVSERDERVIIRQGELLAGKICKKTVGS-SSGSLIHLLWNEAGPERTKDFLGALQ 59
K E+L V+ D V I+ EL+ G + K T+GS S ++ ++L + G D + L
Sbjct 627 KGEDLCVN--DSYVTIQNSELMCGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLA 684
Query 60 KLVNFWLLHQGFTVGCSDIITSQETCKKVEEILKEAKDEVAHLTRLAHQGRLEAQPGKSL 119
+L +L ++GF++G D+ Q K E+L + + G+L+ QPG +
Sbjct 685 RLAPVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTA 744
Query 120 RESFEARVNKELNAAREKSGKIASEQLDESNNIMAMVLAGSKGSTINISQIMACVGQQNV 179
E+ EA + KEL+ R+ +G +LD+SN+ + M L GSKGS INISQ++ACVGQQ +
Sbjct 745 EETLEALILKELSVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAI 804
Query 180 EGKRIPFGF 188
G R+P GF
Sbjct 805 SGSRVPDGF 813
> hsa:11128 POLR3A, RPC1, RPC155, hRPC155; polymerase (RNA) III
(DNA directed) polypeptide A, 155kDa (EC:2.7.7.6); K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]
Length=1390
Score = 122 bits (306), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 102/179 (56%), Gaps = 1/179 (0%)
Query 11 DERVIIRQGELLAGKICKKTVGS-SSGSLIHLLWNEAGPERTKDFLGALQKLVNFWLLHQ 69
D V I+ EL++G + K T+GS S ++ ++L + G D + L +L +L ++
Sbjct 635 DSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNR 694
Query 70 GFTVGCSDIITSQETCKKVEEILKEAKDEVAHLTRLAHQGRLEAQPGKSLRESFEARVNK 129
GF++G D+ Q K E+L + + G+L+ QPG + E+ EA + K
Sbjct 695 GFSIGIGDVTPGQGLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILK 754
Query 130 ELNAAREKSGKIASEQLDESNNIMAMVLAGSKGSTINISQIMACVGQQNVEGKRIPFGF 188
EL+ R+ +G +LD+SN+ + M L GSKGS INISQ++ACVGQQ + G R+P GF
Sbjct 755 ELSVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGF 813
> tgo:TGME49_106290 DNA-directed RNA polymerase III largest subunit,
putative (EC:2.7.7.6); K03018 DNA-directed RNA polymerase
III subunit RPC1 [EC:2.7.7.6]
Length=1746
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 99/186 (53%), Gaps = 0/186 (0%)
Query 3 ENLFVSERDERVIIRQGELLAGKICKKTVGSSSGSLIHLLWNEAGPERTKDFLGALQKLV 62
E F+ D VI R EL+AG I KK +G + L L + P + +G + KL
Sbjct 703 EAPFMCPSDAYVIFRHSELVAGCIGKKVLGDAKFGLFFHLIRDNSPAQAAACMGRIAKLS 762
Query 63 NFWLLHQGFTVGCSDIITSQETCKKVEEILKEAKDEVAHLTRLAHQGRLEAQPGKSLRES 122
W ++G T+G D+ S ++IL + VA ++ +G L+ PG +L ++
Sbjct 763 ARWFANRGMTIGIDDVTPSPTLLAAKKDILNHGYNLVAQEIQMYKKGALQPHPGCTLEQT 822
Query 123 FEARVNKELNAAREKSGKIASEQLDESNNIMAMVLAGSKGSTINISQIMACVGQQNVEGK 182
E RV L+ R ++GK + L N + M +G+KG+ INI+Q++ACVGQQNV G+
Sbjct 823 LEVRVKSILDDLRNEAGKACNRVLHPLNKPLIMFNSGAKGALINIAQMIACVGQQNVSGQ 882
Query 183 RIPFGF 188
RI GF
Sbjct 883 RIQNGF 888
> cel:C42D4.8 rpc-1; RNA Polymerase, Class III (C) family member
(rpc-1); K03018 DNA-directed RNA polymerase III subunit RPC1
[EC:2.7.7.6]
Length=1400
Score = 117 bits (293), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 110/186 (59%), Gaps = 1/186 (0%)
Query 4 NLFVSERDERVIIRQGELLAGKICKKTVGSSSG-SLIHLLWNEAGPERTKDFLGALQKLV 62
NL + +D VIIR LLAG + K +GSSS ++ ++L + G + D + L ++
Sbjct 624 NLELCSKDSYVIIRNSVLLAGCLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMA 683
Query 63 NFWLLHQGFTVGCSDIITSQETCKKVEEILKEAKDEVAHLTRLAHQGRLEAQPGKSLRES 122
+L ++GF++G D+ S++ ++ +++ + + + +G+L+AQPG + E+
Sbjct 684 PVFLSNRGFSIGIGDVRPSEQLLREKGQLVDNGYSKCSQYIKELEEGKLKAQPGCTEEET 743
Query 123 FEARVNKELNAAREKSGKIASEQLDESNNIMAMVLAGSKGSTINISQIMACVGQQNVEGK 182
E+ + +EL+ R+ +G++ L + N + M + GSKGS INISQ++ACVGQQ + G
Sbjct 744 LESIILRELSTIRDHAGQVCLRNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAISGH 803
Query 183 RIPFGF 188
R P GF
Sbjct 804 RPPDGF 809
> sce:YOR116C RPO31, RPC1, RPC160; C160 (EC:2.7.7.6); K03018 DNA-directed
RNA polymerase III subunit RPC1 [EC:2.7.7.6]
Length=1460
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 108/183 (59%), Gaps = 1/183 (0%)
Query 7 VSERDERVIIRQGELLAGKICKKTVGSSS-GSLIHLLWNEAGPERTKDFLGALQKLVNFW 65
+S+ D VIIR ++L+G + K +G S+ + + + GP+ + + + KL +
Sbjct 645 MSQNDGFVIIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMAKLCARF 704
Query 66 LLHQGFTVGCSDIITSQETCKKVEEILKEAKDEVAHLTRLAHQGRLEAQPGKSLRESFEA 125
L ++GF++G +D+ + + +K EE+++ A + L L ++G LE QPG + ++ EA
Sbjct 705 LGNRGFSIGINDVTPADDLKQKKEELVEIAYHKCDELITLFNKGELETQPGCNEEQTLEA 764
Query 126 RVNKELNAAREKSGKIASEQLDESNNIMAMVLAGSKGSTINISQIMACVGQQNVEGKRIP 185
++ L+ RE+ G + +LD N + M GSKGST+N+SQ++A VGQQ + G R+P
Sbjct 765 KIGGLLSKVREEVGDVCINELDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVP 824
Query 186 FGF 188
GF
Sbjct 825 DGF 827
> cpv:cgd6_3290 DNA-directed RNA polymerase III C1 subunit ; K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]
Length=1871
Score = 113 bits (282), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 102/177 (57%), Gaps = 3/177 (1%)
Query 14 VIIRQGELLAGKICKKTVG--SSSGSLIHLLWNEAGPERTKDFLGALQKLVNFWLLHQGF 71
V++R ELLAG I KK +G S G ++L E +++ + +G + + V+ +L ++G
Sbjct 634 VVVRHSELLAGAIGKKVLGGGSKEGLFFYILL-ENNAKKSSECMGRISRFVSRYLANKGM 692
Query 72 TVGCSDIITSQETCKKVEEILKEAKDEVAHLTRLAHQGRLEAQPGKSLRESFEARVNKEL 131
T+G D+ + E + +L++ V +G+L PG SL ++ E +V K L
Sbjct 693 TIGIDDVTPNAELLVAKKNLLEDGYQRVQDEINSYEKGKLTPHPGLSLEDTLELKVKKIL 752
Query 132 NAAREKSGKIASEQLDESNNIMAMVLAGSKGSTINISQIMACVGQQNVEGKRIPFGF 188
+ R ++GK + L SN + M L+G+KG INI+Q++ACVGQQNV G+RI GF
Sbjct 753 DDIRNEAGKASHISLPPSNKPLLMYLSGAKGQLINIAQMVACVGQQNVAGQRIQNGF 809
> pfa:PF13_0150 DNA-directed RNA polymerase 3 largest subunit
(EC:2.7.7.6); K03018 DNA-directed RNA polymerase III subunit
RPC1 [EC:2.7.7.6]
Length=2356
Score = 105 bits (263), Expect = 7e-23, Method: Composition-based stats.
Identities = 59/178 (33%), Positives = 100/178 (56%), Gaps = 0/178 (0%)
Query 11 DERVIIRQGELLAGKICKKTVGSSSGSLIHLLWNEAGPERTKDFLGALQKLVNFWLLHQG 70
D V + EL+ G + KK +GSS L + L + + L KL + + ++G
Sbjct 747 DSYVCFYKSELICGSLGKKVLGSSKYGLFYYLIHHNSSHIALKIMNRLSKLTSRYFSNKG 806
Query 71 FTVGCSDIITSQETCKKVEEILKEAKDEVAHLTRLAHQGRLEAQPGKSLRESFEARVNKE 130
T+G D+ SQ +K +++L + ++V + L ++ +++ QPG +L E+ E +V
Sbjct 807 MTIGIDDVRPSQTLTEKKKDLLLKGYEKVNNEIILYNEKKMQIQPGCTLEETLEIKVKSI 866
Query 131 LNAAREKSGKIASEQLDESNNIMAMVLAGSKGSTINISQIMACVGQQNVEGKRIPFGF 188
L+ R +GK ++ L N + M +G+KG+ INI+Q++ACVGQQNV G+RI GF
Sbjct 867 LDDLRNDAGKTCNQYLHYLNKPLIMFNSGAKGALINIAQMIACVGQQNVAGQRIQNGF 924
> tpv:TP04_0648 DNA-directed RNA polymerase III largest subunit
(EC:2.7.7.6); K03018 DNA-directed RNA polymerase III subunit
RPC1 [EC:2.7.7.6]
Length=1617
Score = 103 bits (257), Expect = 3e-22, Method: Composition-based stats.
Identities = 59/178 (33%), Positives = 102/178 (57%), Gaps = 2/178 (1%)
Query 11 DERVIIRQGELLAGKICKKTVGSSSGSLIHLLWNEAGPERTKDFLGALQKLVNFWLLHQG 70
D V+I + EL+ G + +++G+S G L + L + P+ + + + + KL + WL G
Sbjct 717 DGYVVIYKSELMCGSLGVRSLGASKGGLFYELMLKNSPKISSECMLRVSKLSSRWLSEFG 776
Query 71 FTVGCSDIITSQETCKKVEEILKEAKDEVAHLTRLAHQGRLEAQPGKSLRESFEARVNKE 130
T+G D+ S+E K +++L + V +++ L+ PG + ++ E +V
Sbjct 777 MTIGLDDVTPSRELIDKKKQLLLDGYSRVDE--AISNFKFLQPYPGCTREQTLELQVKSI 834
Query 131 LNAAREKSGKIASEQLDESNNIMAMVLAGSKGSTINISQIMACVGQQNVEGKRIPFGF 188
L+ R +SGKI + L+ N + M +G+KG+ INI+Q++ACVGQQNV G+RI GF
Sbjct 835 LDELRNESGKICTSLLNPDNKPLIMFNSGAKGALINIAQMVACVGQQNVSGQRIQNGF 892
> bbo:BBOV_III007400 17.m07648; RNA polymerase Rpb1, domain containing
protein; K03018 DNA-directed RNA polymerase III subunit
RPC1 [EC:2.7.7.6]
Length=1541
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 96/186 (51%), Gaps = 2/186 (1%)
Query 3 ENLFVSERDERVIIRQGELLAGKICKKTVGSSSGSLIHLLWNEAGPERTKDFLGALQKLV 62
+N + +D VI EL++G + KK +G+S L + L + + + KL
Sbjct 682 KNACMCPKDGYVIFHNSELVSGALGKKALGASKDGLFYQLLTRNNRYIAAECMLRVSKLT 741
Query 63 NFWLLHQGFTVGCSDIITSQETCKKVEEILKEAKDEVAHLTRLAHQGRLEAQPGKSLRES 122
+ WL G T+G D+ E +E+L E +V + + L+A PG + E+
Sbjct 742 SRWLAGFGMTIGLDDVRPGPELLHHKQELLNEGYAKVT--AAINNFDTLQALPGCTREET 799
Query 123 FEARVNKELNAAREKSGKIASEQLDESNNIMAMVLAGSKGSTINISQIMACVGQQNVEGK 182
E +V + L+ R ++GK + L N + M +G+KG+ INI+Q++A VGQQNV G+
Sbjct 800 LELQVKRVLDELRNEAGKACNSNLRADNKPLIMFNSGAKGALINIAQMVALVGQQNVSGQ 859
Query 183 RIPFGF 188
RI GF
Sbjct 860 RIENGF 865
> ath:AT5G60040 NRPC1; NRPC1; DNA binding / DNA-directed RNA polymerase/
ribonucleoside binding / zinc ion binding; K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]
Length=1376
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 91/179 (50%), Gaps = 1/179 (0%)
Query 11 DERVIIRQGELLAGKICKKTVGSSS-GSLIHLLWNEAGPERTKDFLGALQKLVNFWLLHQ 69
D V R EL++G++ K T+G+ + L +L + + L KL W+
Sbjct 636 DGWVYFRNSELISGQLGKATLGNGNKDGLYSILLRDYNSHAAAVCMNRLAKLSARWIGIH 695
Query 70 GFTVGCSDIITSQETCKKVEEILKEAKDEVAHLTRLAHQGRLEAQPGKSLRESFEARVNK 129
GF++G D+ +E K+ ++ ++ D+ ++G L+ + G +S EA +
Sbjct 696 GFSIGIDDVQPGEELSKERKDSIQFGYDQCHRKIEEFNRGNLQLKAGLDGAKSLEAEITG 755
Query 130 ELNAAREKSGKIASEQLDESNNIMAMVLAGSKGSTINISQIMACVGQQNVEGKRIPFGF 188
LN RE +GK L N+ + M GSKGS INISQ++ACVGQQ V G R P GF
Sbjct 756 ILNTIREATGKACMSGLHWRNSPLIMSQCGSKGSPINISQMVACVGQQTVNGHRAPDGF 814
> hsa:25885 POLR1A, A190, DKFZp586M0122, FLJ21915, MGC87965, RPA1,
RPA194, RPO1-4, RPO14; polymerase (RNA) I polypeptide A,
194kDa (EC:2.7.7.6); K02999 DNA-directed RNA polymerase I
subunit RPA1 [EC:2.7.7.6]
Length=1720
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 93/196 (47%), Gaps = 21/196 (10%)
Query 11 DERVIIRQGELLAGKICKKTVGSSSGSLIHLLWNEAGPERTKDFLGALQKLVNFWL-LHQ 69
+ +VIIR+GELL G + K GSS+ L+H + G E + L L +L +L L++
Sbjct 734 ESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYR 793
Query 70 GFTVGCSDIITSQETCKKVEEILKEAK-------------------DEVAHLTRLAHQGR 110
GFT+G DI+ + K + I++E+ DEV + AH G+
Sbjct 794 GFTLGVEDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEVRGKWQDAHLGK 853
Query 111 LEAQPGKSLRESFEARVNKELNAAREKSGKIASEQLDESNNIMAMVLAGSKGSTINISQI 170
+ + + F+ VN N + + N++ MV +G+KGST+N QI
Sbjct 854 -DQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQFPENSLQMMVQSGAKGSTVNTMQI 912
Query 171 MACVGQQNVEGKRIPF 186
+GQ +EG+R P
Sbjct 913 SCLLGQIELEGRRPPL 928
> sce:YOR341W RPA190, RRN1; A190 (EC:2.7.7.6); K02999 DNA-directed
RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Length=1664
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 96/193 (49%), Gaps = 24/193 (12%)
Query 14 VIIRQGELLAGKICKKTVGSSSGSLIHLLWNEAGPERTKDFLGALQKLVNFWLLHQGFTV 73
V+ + G LL G + K G+S ++H L GPE L L +L ++ FT
Sbjct 769 VLFKDGALLCGILDKSQYGASKYGIVHSLHEVYGPEVAAKVLSVLGRLFTNYITATAFTC 828
Query 74 GCSDIITSQETCKKVEEILK-------EAKDEVAHLTR--LAHQGRLEAQPGKSLRES-- 122
G D+ + E K +ILK EA EV +L + A L + + LR++
Sbjct 829 GMDDLRLTAEGNKWRTDILKTSVDTGREAAAEVTNLDKDTPADDPELLKRLQEILRDNNK 888
Query 123 ---FEARVNKELNAAREKSGKIASEQLDES-------NNIMAMVLAGSKGSTINISQIMA 172
+A + ++NA + ++ S+ + + N++ AM L+G+KGS +N+SQIM
Sbjct 889 SGILDAVTSSKVNAI---TSQVVSKCVPDGTMKKFPCNSMQAMALSGAKGSNVNVSQIMC 945
Query 173 CVGQQNVEGKRIP 185
+GQQ +EG+R+P
Sbjct 946 LLGQQALEGRRVP 958
> xla:398274 polr1a; polymerase (RNA) I polypeptide A, 194kDa;
K02999 DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Length=1730
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 90/195 (46%), Gaps = 19/195 (9%)
Query 11 DERVIIRQGELLAGKICKKTVGSSSGSLIHLLWNEAGPERTKDFLGALQKLVNFWL-LHQ 69
+ +VIIR GELL G + K GSSS L+H + G E + L L +L +L L++
Sbjct 739 ESQVIIRNGELLCGVLDKAHYGSSSFGLVHCCYELYGGETSGKLLTCLARLFTAYLKLYR 798
Query 70 GFTVGCSDIITSQETCKKVEEILKEAKDEVAHLTRLAH-----------QGRL-EAQPGK 117
GFT+G DI+ K + I++ + R A QG+ +A K
Sbjct 799 GFTLGVEDILVLPYADAKRQNIVEHSMQCGGRAIRAAFNLADAASDEEAQGKWQDAHLAK 858
Query 118 SLRE------SFEARVNKELNAAREKSGKIASEQLDESNNIMAMVLAGSKGSTINISQIM 171
R+ F+ VN+ N + + NN+ MV +G+KGST+N QI
Sbjct 859 DQRDFNMVDLKFKEEVNQFNNEINKVCMPFGLHRSFPENNLQLMVQSGAKGSTVNTMQIS 918
Query 172 ACVGQQNVEGKRIPF 186
+GQ +EG+R P
Sbjct 919 CLLGQIELEGRRPPL 933
> dre:327078 polr1a, cb934, fa26a03, sb:cb935, wu:fa26a03; polymerase
(RNA) I polypeptide A; K02999 DNA-directed RNA polymerase
I subunit RPA1 [EC:2.7.7.6]
Length=1693
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 92/195 (47%), Gaps = 19/195 (9%)
Query 11 DERVIIRQGELLAGKICKKTVGSSSGSLIHLLWNEAGPERTKDFLGALQKLVNFWL-LHQ 69
+ +V+IRQGELL G + K GSS+ L+H + G E + L L +L +L L++
Sbjct 727 ESQVVIRQGELLMGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLFTAYLQLYR 786
Query 70 GFTVGCSDIITSQETCKKVEEILKE------------------AKDEVAHLTRLAHQGRL 111
GFT+G DI+ K+ ++I+K+ A+D A +
Sbjct 787 GFTLGVEDILVKDGANKQRKKIIKKSVTCGSKALQAAFNLPASAEDTEARERWQDAHLNI 846
Query 112 EAQPGKSLRESFEARVNKELNAAREKSGKIASEQLDESNNIMAMVLAGSKGSTINISQIM 171
+ + + F+ VN+ N + + + NN+ MV +G+KGST+N QI
Sbjct 847 DQRDFNMVDLKFKEEVNQVNNNINKVCMPLGLHRSFPENNLQMMVQSGAKGSTVNTMQIS 906
Query 172 ACVGQQNVEGKRIPF 186
+GQ +EG+R P
Sbjct 907 CLLGQIELEGRRPPL 921
> mmu:20019 Polr1a, 194kDa, 3010014K16Rik, RPA194, Rpo1-4, mRPA1;
polymerase (RNA) I polypeptide A (EC:2.7.7.6); K02999 DNA-directed
RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Length=1717
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 91/196 (46%), Gaps = 21/196 (10%)
Query 11 DERVIIRQGELLAGKICKKTVGSSSGSLIHLLWNEAGPERTKDFLGALQKLVNFWL-LHQ 69
+ +VIIR+GELL G + K GSS+ L+H + G E + L L +L +L L++
Sbjct 741 ESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGRVLTCLARLFTAYLQLYR 800
Query 70 GFTVGCSDIITSQETCKKVEEILKEAK-------------------DEVAHLTRLAHQGR 110
GFT+G DI+ + I++E+ DE+ + AH +
Sbjct 801 GFTLGVEDILVKPNADVVRQRIIEESTQCGPQAVKAALSLPETASCDEIQGKWQDAHLSK 860
Query 111 LEAQPGKSLRESFEARVNKELNAAREKSGKIASEQLDESNNIMAMVLAGSKGSTINISQI 170
+ + + F+ VN N + + + NN+ MV +G+KGST+N QI
Sbjct 861 -DQRDFNMIDMKFKEEVNHYSNEINKACMPLGLHRQFPENNLQMMVQSGAKGSTVNTMQI 919
Query 171 MACVGQQNVEGKRIPF 186
+GQ +EG+R P
Sbjct 920 SCLLGQIELEGRRPPL 935
> cel:Y48E1A.1 hypothetical protein; K02999 DNA-directed RNA polymerase
I subunit RPA1 [EC:2.7.7.6]
Length=1737
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 80/191 (41%), Gaps = 20/191 (10%)
Query 14 VIIRQGELLAGKICKKTVGSSSGSLIHLLWNEAGPERTKDFLGALQKLVNFWLLHQGFTV 73
V+ RQGELL G + K G++ L H + G L +L +L GFT+
Sbjct 772 VVFRQGELLVGVLDKAHFGATQFGLAHCAFELYGHRCGVQLLSCFSRLFTTYLQFHGFTL 831
Query 74 GCSDIITSQETCKKVEEILKEAKDEVAHLTRLAHQGRLEAQPG----------------- 116
G +DI+ ++ K +E + E++ + + A A P
Sbjct 832 GVADILVVKDADGKRKEAVMESRTIGNQVVKTAFGLPDTATPAEIKRTLAATYCNPRGQG 891
Query 117 ---KSLRESFEARVNKELNAAREKSGKIASEQLDESNNIMAMVLAGSKGSTINISQIMAC 173
K L + + K +A + +L N + M+ +G+KGS +N QI C
Sbjct 892 TDVKMLDFGMKQGIAKYNDAITKSCVPTGLLRLFPQNALQLMIQSGAKGSAVNAIQISGC 951
Query 174 VGQQNVEGKRI 184
+GQ +EGKR+
Sbjct 952 LGQIELEGKRM 962
> ath:AT3G57660 NRPA1; NRPA1; DNA binding / DNA-directed RNA polymerase/
zinc ion binding; K02999 DNA-directed RNA polymerase
I subunit RPA1 [EC:2.7.7.6]
Length=1670
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 94/205 (45%), Gaps = 27/205 (13%)
Query 2 KENLFVSERDERVIIRQGELLAGKICKKTVGSSSGSLIHLLWNEAGPERTKDFLGALQKL 61
K+NL ++++ IR+ E + G I K L+H + G + L +L
Sbjct 773 KQNL----NEDKLHIRKNEFVCGVIDKAQFADYG--LVHTVHELYGSNAAGNLLSVFSRL 826
Query 62 VNFWLLHQGFTVGCSDII---------TSQ-ETCKKV-EEILKEA--KDEVAHLTRLAHQ 108
+L GFT G D+I T Q + C+ V E +L++ D + +
Sbjct 827 FTVFLQTHGFTCGVDDLIILKDMDEERTKQLQECENVGERVLRKTFGIDVDVQIDPQDMR 886
Query 109 GRLE---AQPGKSLRESFEARVNKELNAAREKS--GKIASEQLDES---NNIMAMVLAGS 160
R+E + G+S S + + LN K + S+ L ++ N I M ++G+
Sbjct 887 SRIERILYEDGESALASLDRSIVNYLNQCSSKGVMNDLLSDGLLKTPGRNCISLMTISGA 946
Query 161 KGSTINISQIMACVGQQNVEGKRIP 185
KGS +N QI + +GQQ++EGKR+P
Sbjct 947 KGSKVNFQQISSHLGQQDLEGKRVP 971
> cpv:cgd5_730 DNA-directed RNA polymerase I ; K02999 DNA-directed
RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Length=1805
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query 9 ERDERV-IIRQGELLAGKICKKTVGSSSGSLIHLLWNEAGPERTKDFLGALQKLVNFWLL 67
E++E V IIR ELL G I K +GS+S L+HL GP L A+ L +L
Sbjct 879 EKEEAVVIIRNSELLQGVIDKNQIGSNSYCLVHLCTELVGPLIGGKLLSAIFNLSQVYLQ 938
Query 68 HQGFTVGCSD-IITSQETCKKVEEILK 93
+GFT SD ++T Q +++E + K
Sbjct 939 MRGFTCSISDMLLTPQAESERIELMKK 965
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 25/122 (20%)
Query 87 KVEEILKEAKDEVAHLTRLAHQGRLEAQPGKSLRESFEARVNKELNAAREKSGKI----- 141
K+EE +++ D+ + + G A P + R E+ + +LN ++ KI
Sbjct 1164 KMEESIEDKFDDEEN--EFNNHGDFFAYPNELTRRKLESLIGNKLNTKKDSLLKIMDAIS 1221
Query 142 ------------------ASEQLDESNNIMAMVLAGSKGSTINISQIMACVGQQNVEGKR 183
+S+ N +MVL G+KGS +N + I +GQQ +EG+R
Sbjct 1222 KIGLGDITSKLGNLLKGSSSKFPFPYNGFSSMVLTGAKGSRVNYNMICVMLGQQELEGRR 1281
Query 184 IP 185
+P
Sbjct 1282 VP 1283
> bbo:BBOV_IV009600 23.m06317; DNA directed RNA polymerase (EC:2.7.7.6);
K02999 DNA-directed RNA polymerase I subunit RPA1
[EC:2.7.7.6]
Length=2016
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 0/89 (0%)
Query 14 VIIRQGELLAGKICKKTVGSSSGSLIHLLWNEAGPERTKDFLGALQKLVNFWLLHQGFTV 73
+IIR ELL G + K G++ L HL++ GP + L A L +L G T
Sbjct 894 IIIRNSELLQGVLDKSQFGATPYGLTHLVYELLGPRASGSLLNAFSYLFTSFLQMHGATC 953
Query 74 GCSDIITSQETCKKVEEILKEAKDEVAHL 102
D I + E + E IL+ K HL
Sbjct 954 SPQDFILTSEAERHRERILRRIKHCGIHL 982
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 26/36 (72%), Gaps = 0/36 (0%)
Query 150 NNIMAMVLAGSKGSTINISQIMACVGQQNVEGKRIP 185
N +MVL G+KGS +N S I + + QQ++EG+R+P
Sbjct 1200 NGFASMVLTGAKGSKVNFSMICSILAQQSLEGRRVP 1235
> tpv:TP01_0809 RNA polymerase large subunit; K02999 DNA-directed
RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Length=1996
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 0/97 (0%)
Query 9 ERDERVIIRQGELLAGKICKKTVGSSSGSLIHLLWNEAGPERTKDFLGALQKLVNFWLLH 68
+ + +IIR ELL G + K G+SS L HL++ GP L + L +L
Sbjct 854 KEESTIIIRNSELLQGVLDKSQFGASSYGLTHLIYELLGPRVCGMLLNSFSYLFTSFLQM 913
Query 69 QGFTVGCSDIITSQETCKKVEEILKEAKDEVAHLTRL 105
+G T D + ++ + +ILK K HL L
Sbjct 914 RGATCSPKDFLLTETAESERNKILKRIKYTGLHLQEL 950
Score = 38.9 bits (89), Expect = 0.011, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 0/36 (0%)
Query 150 NNIMAMVLAGSKGSTINISQIMACVGQQNVEGKRIP 185
N MV G+KGS +N + I + QQ +EGKR+P
Sbjct 1179 NGFATMVSTGAKGSKVNFAMISCALSQQTLEGKRVP 1214
> ath:AT1G63020 NRPD1A; NRPD1A (NUCLEAR RNA POLYMERASE D 1A);
DNA binding / DNA-directed RNA polymerase
Length=1453
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 90/208 (43%), Gaps = 44/208 (21%)
Query 14 VIIRQGELLAGKICKKTVGSSSGSLI-HLLWNEAGPERTKDFLGALQKLVNFWLLHQGFT 72
V++ GELL+ + G+ I LL ++ G + D + + Q++++ WLL +G +
Sbjct 564 VVVSNGELLSFSEGSAWLRDGEGNFIERLLKHDKG--KVLDIIYSAQEMLSQWLLMRGLS 621
Query 73 VGCSDIITSQETCKK---VEEI---LKEAK--------------------------DEVA 100
V +D+ S + + EEI L+EA+ D V+
Sbjct 622 VSLADLYLSSDLQSRKNLTEEISYGLREAEQVCNKQQLMVESWRDFLAVNGEDKEEDSVS 681
Query 101 HLTRLAHQGRLEAQPGKSLRESFEARVNKELNAAREKSGKIASEQLDESNNIMAMVLAGS 160
L R + E Q +L E V+ +A R+ +A D+SN+ + M AGS
Sbjct 682 DLARFCY----ERQKSATLSE---LAVSAFKDAYRDVQA-LAYRYGDQSNSFLIMSKAGS 733
Query 161 KGSTINISQIMACVGQQNVEGKRIPFGF 188
KG+ + Q C+G QN + FGF
Sbjct 734 KGNIGKLVQHSMCIGLQN-SAVSLSFGF 760
> tgo:TGME49_044880 DNA-directed RNA polymerase I largest subunit,
putative (EC:2.7.7.49 2.7.7.6); K02999 DNA-directed RNA
polymerase I subunit RPA1 [EC:2.7.7.6]
Length=2768
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 11/59 (18%)
Query 139 GKIASEQLD-----------ESNNIMAMVLAGSKGSTINISQIMACVGQQNVEGKRIPF 186
GK+AS+ D N +M+ +GSKGS +N + I +GQQ++EG+R+ F
Sbjct 1627 GKVASKSTDIMKGSYFLYRFPRNGFASMIKSGSKGSNVNFAMISVFLGQQSLEGQRVKF 1685
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 17/118 (14%)
Query 11 DERVIIRQGELLAGKICKKTVGSSSGSLIHLLWNEAGPERTKDFLGALQKLVNFWLLHQG 70
+E VIIR ELL G K G ++G L+H ++ G L +L L +L +
Sbjct 1123 EEVVIIRNSELLQGVFDKAQFGPTAGGLVHCVFLLFGGAAAGLLLQSLAALFCAFLKLRS 1182
Query 71 FTVGCSDIITSQETCKKVEEILKEAKDEVAHLTRLAHQGRLEAQPGKSLRESFEARVN 128
T +D + +E + + ++++ Q G L+E F AR+N
Sbjct 1183 ATTSPADFVMRREGELQRQALVRQV-----------------IQAGTYLQEHFTARMN 1223
> pfa:PFE0465c RNA polymerase I; K02999 DNA-directed RNA polymerase
I subunit RPA1 [EC:2.7.7.6]
Length=2914
Score = 38.9 bits (89), Expect = 0.011, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query 10 RDERVIIRQGELLAGKICKKTVGSSSGSLIHLLWNEAGPERTKDFLGALQKLVNFWLLHQ 69
++ VII+ ELL G + K G+SS SL+HL GP+ + L +L +L +
Sbjct 1167 KENEVIIKNSELLQGVLDKLHFGASSNSLVHLCHELFGPKTSAVMLDCFGRLFINFLQLR 1226
Query 70 GFTVGCSDIITSQETCKKVEEILKE 94
G ++ D I ++ KK + ++K+
Sbjct 1227 GTSLSLYDFILNKNA-KKEKSLIKK 1250
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 0/37 (0%)
Query 149 SNNIMAMVLAGSKGSTINISQIMACVGQQNVEGKRIP 185
+N M+ G+KGS +N S I + QQ +EGKR+P
Sbjct 1807 NNGFSNMIFTGAKGSKVNYSMICGMLDQQYLEGKRVP 1843
> ath:AT2G40030 NRPD1B; NRPD1B; DNA binding / DNA-directed RNA
polymerase
Length=1976
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
Query 7 VSERDERVIIRQGELLAGKICKKTVGSSSGSLIHLLWNEAGPERTKDFLGALQKLVNFWL 66
+S + +R ++ +LL +GS ++ ++ E GP+ T F +LQ L+ L
Sbjct 553 LSCKGDRFLVDGSDLLKFDFGVDAMGSIINEIVTSIFLEKGPKETLGFFDSLQPLLMESL 612
Query 67 LHQGFTVGCSDIITSQETCKKVEE-ILKEAKDEVAHLTRLAHQGRLE 112
+GF++ D+ S+ + I++E V+ L RL+++ L+
Sbjct 613 FAEGFSLSLEDLSMSRADMDVIHNLIIREISPMVSRL-RLSYRDELQ 658
> xla:100322880 robo3, hgpps, hgps, rbig1, rig1; roundabout, axon
guidance receptor, homolog 3; K06755 roundabout, axon guidance
receptor 3
Length=1396
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 0/32 (0%)
Query 1 KKENLFVSERDERVIIRQGELLAGKICKKTVG 32
KK+N+ +S++DER+ IR G+L+ K G
Sbjct 174 KKDNMRISDKDERITIRGGKLMISNTRKSDAG 205
> pfa:PF14_0725 tubulin, putative; K10391 tubulin epsilon
Length=519
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 15/123 (12%)
Query 71 FTVGCSDIITSQETCKKVEEILKEAKDEVAHLTRLAHQGRLEAQPGKSLRESFEARVNKE 130
F C D+ITS + E + V +++ L K LRE + N
Sbjct 181 FPSVCDDVITSPYNSFFALNKIHEFSNCVL---PVSNDALLNILNSKKLREIDKTVKNNN 237
Query 131 LNAAREKSGKIASEQLDESNNIMAMVLAGSKGSTINISQIMACVGQQNVE-----GKRIP 185
+N+ +K+ I + NNI+A V+ +N++ M G NV+ IP
Sbjct 238 INSVNDKNTSIVKNDYSKMNNIVANVI-------LNLTSSMRFEGSLNVDINEICTNLIP 290
Query 186 FGF 188
+ F
Sbjct 291 YPF 293
> cel:Y43F4B.6 klp-19; Kinesin-Like Protein family member (klp-19);
K10395 kinesin family member 4/7/21/27
Length=1083
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query 59 QKLVNFWLLHQGFTVGCSDIITSQETCKKVEEILKEAKDEVAHLT----RLAHQGRLEAQ 114
QKL + H +D+ QET +++EE LK+ +DE+ +L RL + R EA
Sbjct 565 QKLKDLERQHAEDKKVLNDMKKLQETRRRMEETLKKTEDELKNLKTQRLRLLREQRAEAS 624
Query 115 PGKSLRESFE 124
++ ++ E
Sbjct 625 KFQAFKQKHE 634
Lambda K H
0.315 0.131 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 5364689396
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
Posted date: Sep 17, 2011 2:57 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40