bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: egene_temp_file_orthology_annotation_similarity_blast_database_866 164,496 sequences; 82,071,388 total letters Query= Eten_1653_orf1 Length=201 Score E Sequences producing significant alignments: (Bits) Value tgo:TGME49_067390 DNA-directed RNA polymerases I and III subun... 305 8e-83 cpv:cgd8_300 RNA polymerase III C5 subunit ; K03027 DNA-direct... 233 5e-61 bbo:BBOV_III011540 17.m07985; DNA-directed RNA polymerase, alp... 223 4e-58 pfa:PF11_0445 DNA-directed RNA polymerase I, putative; K03027 ... 195 7e-50 ath:AT1G60620 ATRPAC43; DNA binding / DNA-directed RNA polymer... 179 6e-45 ath:AT1G60850 ATRPAC42; DNA binding / DNA-directed RNA polymer... 162 6e-40 dre:393538 polr1c, MGC65973, zgc:65973; polymerase (RNA) I pol... 159 5e-39 sce:YPR110C RPC40, RPC5; AC40; K03027 DNA-directed RNA polymer... 157 2e-38 mmu:20016 Polr1c, 40kDa, AA409007, AA959927, AL024089, MGC1611... 154 3e-37 xla:432333 polr1c, MGC78824, rpa39, rpa40, rpa5, rpac1; polyme... 149 4e-36 tpv:TP02_0766 DNA-directed RNA polymerase I; K03027 DNA-direct... 149 9e-36 hsa:9533 POLR1C, RPA39, RPA40, RPA5, RPAC1, TCS3; polymerase (... 142 6e-34 cel:H43I07.2 hypothetical protein; K03027 DNA-directed RNA pol... 131 2e-30 ath:AT2G15430 NRPB3; NRPB3; DNA binding / DNA-directed RNA pol... 87.4 3e-17 cpv:cgd1_2710 RNA polymerase II B3 subunit ; K03011 DNA-direct... 83.6 4e-16 xla:432060 polr2c, MGC81245; polymerase (RNA) II (DNA directed... 80.5 4e-15 mmu:20021 Polr2c, 33kDa, MGC118242, RPB3, Rpo2-3, mRBP31; poly... 77.4 3e-14 hsa:5432 POLR2C, RPB3, RPB31, hRPB33, hsRPB3; polymerase (RNA)... 76.6 5e-14 tgo:TGME49_038190 DNA-directed RNA polymerase II, putative (EC... 73.2 6e-13 ath:AT2G15400 NRPE3B; NRPE3B; DNA binding / DNA-directed RNA p... 72.4 1e-12 dre:334669 polr2c, wu:fk48d01, zgc:56285; polymerase (RNA) II ... 71.6 2e-12 cel:C36B1.3 rpb-3; RNA Polymerase II (B) subunit family member... 65.9 9e-11 tpv:TP01_0029 DNA-directed RNA polymerase II; K03011 DNA-direc... 62.0 1e-09 bbo:BBOV_I002600 19.m02023; DNA-directed RNA polymerase II (EC... 55.8 1e-07 sce:YIL021W RPB3; B44; K03011 DNA-directed RNA polymerase II s... 52.8 8e-07 pfa:PFI1130c DNA-directed RNA polymerase II, putative (EC:2.7.... 45.8 9e-05 ath:AT3G14810 MSL5; MSL5 (MECHANOSENSITIVE CHANNEL OF SMALL CO... 34.3 0.26 xla:100158303 hypothetical protein LOC100158303 32.3 1.0 xla:398305 rnf103-a, kf1, rnf103, x-kf-1a, zfp103; ring finger... 31.6 1.9 xla:414533 socs3, MGC81248, atod4, cis3, cish3, socs-3, ssi-3,... 31.6 2.1 xla:380467 socs3, MGC64393; suppressor of cytokine signaling 3... 31.2 2.5 mmu:18415 Hspa4l, 94kDa, AI461691, APG-1, MGC117843, Osp94; he... 30.8 3.0 dre:556874 col6a3, wu:fb06e12, wu:fs74g09; collagen, type VI, ... 30.0 5.5 xla:446526 snx6, MGC80251; sorting nexin 6 29.6 xla:432136 enosf1, MGC80074; enolase superfamily member 1 29.6 xla:496311 hypothetical LOC496311 29.3 9.0 > tgo:TGME49_067390 DNA-directed RNA polymerases I and III subunit RPAC1, putative (EC:2.7.7.6); K03027 DNA-directed RNA polymerases I and III subunit RPAC1 Length=346 Score = 305 bits (781), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 139/201 (69%), Positives = 165/201 (82%), Gaps = 0/201 (0%) Query 1 EVLAHRLGLIPFKVNPKKLKFRNPNQELSEENSLKFKMHVKCSPGDLKPHQKSMPVYARD 60 EVLAHRLGLIPF V+P L +R PNQE+++EN+L+ +HVKC+ L PHQ S+PVYA+ Sbjct 114 EVLAHRLGLIPFIVDPTALNYRQPNQEVTDENALRVSLHVKCTEQSLGPHQTSLPVYAKH 173 Query 61 LKWIPMSERQKQKFAQDPPAPVHPDILITKLRPGQEIELFGFLEKGLGKTHAKWSPVATA 120 +KW PMS QK+ FA +PP VHPDILITKLRPGQEIEL +LEKG+GKTHAKWSPV TA Sbjct 174 IKWEPMSPSQKEAFAANPPRAVHPDILITKLRPGQEIELKAYLEKGVGKTHAKWSPVCTA 233 Query 121 VYRLEPEFVFTSPIEGEEAKELKELCPMGVFDIEDSTGRAYAKFPRNCTTCRACLERFEN 180 VYRLEPE VF I+GE+A +L LCPMGVFDIED+TG AYA++PRNCTTCRAC+ERF Sbjct 234 VYRLEPEIVFKESIQGEDASDLCSLCPMGVFDIEDTTGEAYARYPRNCTTCRACIERFPK 293 Query 181 QLQLNKIPDQFIFSIESTGSV 201 +++L KI D FIFSIESTGSV Sbjct 294 EIELRKIKDHFIFSIESTGSV 314 > cpv:cgd8_300 RNA polymerase III C5 subunit ; K03027 DNA-directed RNA polymerases I and III subunit RPAC1 Length=344 Score = 233 bits (593), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 113/206 (54%), Positives = 151/206 (73%), Gaps = 6/206 (2%) Query 1 EVLAHRLGLIPFKVNPKKLKFRNPNQELSEENSLKFKMHVKCSPGDLKPHQK---SMPVY 57 EVLAHRLGLIP ++P ++FRN +++L+E+NS+ FK++VKC+ D+ H+K S +Y Sbjct 110 EVLAHRLGLIPMLIDPNTIEFRNEDEDLNEKNSVCFKLNVKCTKDDIN-HEKGITSKAIY 168 Query 58 ARDLKWIPMSERQKQKFAQDPPAPVHPDILITKLRPGQEIELFGFLEKGLGKTHAKWSPV 117 ++DL WIP+S+ Q++KF + PP V DILITKLRPGQ IE + EK +G+ HAKWSPV Sbjct 169 SKDLVWIPLSDNQRKKFGKTPPKVVTDDILITKLRPGQSIEAILYCEKNIGRVHAKWSPV 228 Query 118 ATAVYRLEPEFVF-TSPIEGEEAKELKE-LCPMGVFDIEDSTGRAYAKFPRNCTTCRACL 175 TA YRL PEF F PI G +A +L++ +CPM VFDIED TG A PRNCTTCRAC+ Sbjct 229 CTASYRLLPEFGFPNGPISGSDALKLRDTVCPMKVFDIEDVTGNAVPTNPRNCTTCRACI 288 Query 176 ERFENQLQLNKIPDQFIFSIESTGSV 201 E+F N+++L K FIFSIE+TG + Sbjct 289 EKFPNKIKLLKDKFHFIFSIETTGCI 314 > bbo:BBOV_III011540 17.m07985; DNA-directed RNA polymerase, alpha subunit, N terminal domain containing protein; K03027 DNA-directed RNA polymerases I and III subunit RPAC1 Length=319 Score = 223 bits (568), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 104/203 (51%), Positives = 147/203 (72%), Gaps = 6/203 (2%) Query 1 EVLAHRLGLIPFKVNPKKLKFRNPNQELSEENSLKFKMHVKCSPGDLKPHQKSMPVYARD 60 EVLAHRLGL+PF NP + +R+ N++LS++NS+ F + V+C L + ++PVYA D Sbjct 89 EVLAHRLGLVPFDCNPDLIPYRD-NEDLSDKNSVCFHLKVECKKESL-AGRTNLPVYAGD 146 Query 61 LKWIPMSERQKQKFAQDPPAPVHPDILITKLRPGQEIELFGFLEKGLGKTHAKWSPVATA 120 +KW+P+S+ Q + F +PP P+H DIL+TKL PGQEI+L +LEKG+GKTHAKWSPV TA Sbjct 147 MKWVPLSDEQAELFKDNPPKPIHKDILLTKLSPGQEIDLKAYLEKGIGKTHAKWSPVCTA 206 Query 121 VYRLEPEFVFT--SPIEGEEAKELKELCPMGVFDIEDSTGRAYAKFPRNCTTCRACLERF 178 VYR +P+ F+ P+ +E +EL ++CPMGVF + GR P NCT+CRACLERF Sbjct 207 VYRFKPDITFSEDEPLTNDEVEELVQICPMGVFSAD--KGRITTIRPYNCTSCRACLERF 264 Query 179 ENQLQLNKIPDQFIFSIESTGSV 201 ++ + K+ + FIFS+ESTG++ Sbjct 265 PKRVIIKKLSNHFIFSVESTGAI 287 > pfa:PF11_0445 DNA-directed RNA polymerase I, putative; K03027 DNA-directed RNA polymerases I and III subunit RPAC1 Length=333 Score = 195 bits (496), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 94/201 (46%), Positives = 134/201 (66%), Gaps = 4/201 (1%) Query 1 EVLAHRLGLIPFKVNPKKLKFRNPNQELSEENSLKFKMHVKCSPGDLKPHQKSMPVYARD 60 E+L HRLGLIPFK + + ++ N++ + N FK+HVK S + +Y++D Sbjct 103 EILCHRLGLIPFKFDADLINYKEDNEKYNHLNCFCFKLHVKFS-SKRTGNDNYQSIYSKD 161 Query 61 LKWIPMSERQKQKFAQDPPAPVHPDILITKLRPGQEIELFGFLEKGLGKTHAKWSPVATA 120 LKW P++E+Q+ KF ++PP V +ILITK+ GQEIEL FL+KG+GKTHAKWSPV TA Sbjct 162 LKWCPINEQQRIKFEKNPPKVVDENILITKISSGQEIELICFLQKGIGKTHAKWSPVCTA 221 Query 121 VYRLEPEFVFTS--PIEGEEAKELKELCPMGVFDIEDSTGRAYAKFPRNCTTCRACLERF 178 VY++ P F F + + EE K+L +CP VFDIEDS + + K P +C+TCR C+E++ Sbjct 222 VYKMYPHFSFNTNEQLSYEEKKDLVNICPQKVFDIEDSQ-QIFVKNPLSCSTCRVCIEKY 280 Query 179 ENQLQLNKIPDQFIFSIESTG 199 ++ K + FIF+IESTG Sbjct 281 PKKISFQKEKNHFIFTIESTG 301 > ath:AT1G60620 ATRPAC43; DNA binding / DNA-directed RNA polymerase/ protein dimerization Length=385 Score = 179 bits (454), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 103/229 (44%), Positives = 137/229 (59%), Gaps = 34/229 (14%) Query 1 EVLAHRLGLIPFKVNPKKLKFRNPNQELSEENSLKFKMHVKCSPGDLKPHQKSMPVYARD 60 EVLAHRLGLIP +P+ ++ + N + +E+N++ FK+HVKC GD P +K V + Sbjct 136 EVLAHRLGLIPIAADPRLFEYLSENDQPNEKNTIVFKLHVKCLKGD--PRRK---VLTSE 190 Query 61 LKWIPM-SERQKQ----------------------KFAQDPPAPVHPDILITKLRPGQEI 97 LKW+P SE K+ +FA++P P DILI KL PGQEI Sbjct 191 LKWLPNGSELIKESGGSTTTPKTYTSFNHSQDSFPEFAENPIRPTLKDILIAKLGPGQEI 250 Query 98 ELFGFLEKGLGKTHAKWSPVATAVYRLEPEFVFTSPIEGEEAKELKELCPMGVFDIED-- 155 EL KG+GKTHAKWSPVATA YR+ PE V EG+ A+EL ++CP VFDIED Sbjct 251 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEVVLLKEFEGKHAEELVKVCPKKVFDIEDMG 310 Query 156 -STGRAYAKFPRNCTTCRACLE---RFENQLQLNKIPDQFIFSIESTGS 200 RA PR+C+ CR C+ +E+Q+ L ++ + FIF+IESTGS Sbjct 311 QGRKRATVARPRDCSLCRECIRDGVEWEDQVDLRRVKNHFIFTIESTGS 359 > ath:AT1G60850 ATRPAC42; DNA binding / DNA-directed RNA polymerase/ protein dimerization Length=375 Score = 162 bits (410), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 96/229 (41%), Positives = 126/229 (55%), Gaps = 33/229 (14%) Query 1 EVLAHRLGLIPFKVNPKKLKFRNPNQELSEENSLKFKMHVKCSPGDLKPHQKSMPVYARD 60 EVLAHR+GLIP +P+ ++ + + + +E+N++ FK+HVKC +P K V D Sbjct 129 EVLAHRMGLIPIAADPRLFEYLSEHDQANEKNTIVFKLHVKCPKN--RPRLK---VLTSD 183 Query 61 LKWIPM-------SERQKQK----------------FAQDPPAPVHPDILITKLRPGQEI 97 LKW+P SE + K FA +P P DILI KL PGQEI Sbjct 184 LKWLPNGSELLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQEI 243 Query 98 ELFGFLEKGLGKTHAKWSPVATAVYRLEPEFVFTSPIEGEEAKELKELCPMGVFDIED-- 155 EL KG+GKTHAKWSPV TA YR+ PE V +E E A+ L +CP VFDIED Sbjct 244 ELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELAERLVNVCPQNVFDIEDMG 303 Query 156 -STGRAYAKFPRNCTTCRACLE--RFENQLQLNKIPDQFIFSIESTGSV 201 RA PR CT C+ C+ + + L + + FIF+IESTGS+ Sbjct 304 KGKKRATVAQPRKCTLCKECVRDDDLVDHVDLGSVKNHFIFNIESTGSL 352 > dre:393538 polr1c, MGC65973, zgc:65973; polymerase (RNA) I polypeptide C; K03027 DNA-directed RNA polymerases I and III subunit RPAC1 Length=347 Score = 159 bits (403), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 87/212 (41%), Positives = 128/212 (60%), Gaps = 14/212 (6%) Query 1 EVLAHRLGLIPFKVNPKKLKFRNP-NQELSEENSLKFKMHVKCSPGDLKPHQKSMP---- 55 E+LAHRLGL+P K +P+ ++RN +QE +E ++++ ++ VKC+ P S P Sbjct 105 EILAHRLGLVPIKADPRLFEYRNSEDQEGTEIDTIQLQLKVKCTRNPRAPKDSSDPKELY 164 Query 56 ----VYARDLKWIPMSERQKQKFAQDPPAPVHPDILITKLRPGQEIELFGFLEKGLGKTH 111 +Y+ D+KW+P+ Q FA PVH DIL+ ++RPGQE+++ KG+GK H Sbjct 165 LNHMIYSGDIKWLPIG-NQADVFADAKIGPVHGDILLAQVRPGQELDIVMHCVKGIGKDH 223 Query 112 AKWSPVATAVYRLEPEFVFTSPIEGEEAKELKELCPMGVFDIEDSTGRAYAKF--PRNCT 169 AK+SPVATA YRL PE IEGE+A+ LK GV ++E+ GR AK R T Sbjct 224 AKFSPVATASYRLLPEITLLQTIEGEQAERLKRCFSPGVIELENVNGRKVAKVVNSRLDT 283 Query 170 TCRACL--ERFENQLQLNKIPDQFIFSIESTG 199 R L + ++ ++L ++ D FIFS+ESTG Sbjct 284 CSREVLRHDDLKSLVKLGRVRDHFIFSVESTG 315 > sce:YPR110C RPC40, RPC5; AC40; K03027 DNA-directed RNA polymerases I and III subunit RPAC1 Length=335 Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 87/215 (40%), Positives = 126/215 (58%), Gaps = 15/215 (6%) Query 1 EVLAHRLGLIPFKVNPKKLKFRNPN----QELSEENSLKFKMHVKCSPGDLKPHQKSMP- 55 EVLAHR+GL+P KV+P L + + N ++ ++EN++ ++VKC+ P + P Sbjct 95 EVLAHRIGLVPLKVDPDMLTWVDSNLPDDEKFTDENTIVLSLNVKCTRNPDAPKGSTDPK 154 Query 56 -------VYARDLKWIPMSERQKQKFAQDPPAPVHPDILITKLRPGQEIELFGFLEKGLG 108 VYARDLK+ P RQ FA P P PDIL+ KLRPGQEI L G+G Sbjct 155 ELYNNAHVYARDLKFEPQG-RQSTTFADCPVVPADPDILLAKLRPGQEISLKAHCILGIG 213 Query 109 KTHAKWSPVATAVYRLEPEFVFTSPIEGEEAKELKELCPMGVFDIEDSTGRAYAKFPRNC 168 HAK+SPV+TA YRL P+ PI+GE A+ ++ P GV I++ + AY K R Sbjct 214 GDHAKFSPVSTASYRLLPQINILQPIKGESARRFQKCFPPGVIGIDEGSDEAYVKDARKD 273 Query 169 TTCRACL--ERFENQLQLNKIPDQFIFSIESTGSV 201 T R L E F ++++L ++ + FIF++ES G++ Sbjct 274 TVSREVLRYEEFADKVKLGRVRNHFIFNVESAGAM 308 > mmu:20016 Polr1c, 40kDa, AA409007, AA959927, AL024089, MGC161175, Polr1e, RPA40, Rpo1-1; polymerase (RNA) I polypeptide C; K03027 DNA-directed RNA polymerases I and III subunit RPAC1 Length=346 Score = 154 bits (388), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 86/215 (40%), Positives = 125/215 (58%), Gaps = 20/215 (9%) Query 1 EVLAHRLGLIPFKVNPKKLKFRNPNQELSEE-NSLKFKMHVKCS-----------PGDLK 48 E+LAHRLGLIP +P+ ++RN +E E ++L+F++ V+C+ P +L Sbjct 104 EILAHRLGLIPILADPRLFEYRNQGEEEGTEIDTLQFRLQVRCTRNPNAAKDSSDPNELY 163 Query 49 PHQKSMPVYARDLKWIPMSERQKQKFAQDPPAPVHPDILITKLRPGQEIELFGFLEKGLG 108 + K VY R + W+P+ Q F + PVH DILI +LRPGQEI+L KG+G Sbjct 164 VNHK---VYTRHMTWVPLGN-QADVFPEGTIRPVHDDILIAQLRPGQEIDLMMHCVKGIG 219 Query 109 KTHAKWSPVATAVYRLEPEFVFTSPIEGEEAKELKELCPMGVFDIEDSTGRAYAKF--PR 166 K HAK+SPVATA YRL P P+EGE A+EL + GV ++E+ G+ A+ R Sbjct 220 KDHAKFSPVATASYRLLPAITLLEPVEGEAAEELSQCFSPGVIEVEEVQGKKVARVANAR 279 Query 167 NCTTCRACL--ERFENQLQLNKIPDQFIFSIESTG 199 T R E+ + ++L ++ D +IFS+ESTG Sbjct 280 LDTFSREIFRHEKLKKAVRLARVRDHYIFSVESTG 314 > xla:432333 polr1c, MGC78824, rpa39, rpa40, rpa5, rpac1; polymerase (RNA) I polypeptide C, 30kDa; K03027 DNA-directed RNA polymerases I and III subunit RPAC1 Length=347 Score = 149 bits (377), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 85/215 (39%), Positives = 126/215 (58%), Gaps = 19/215 (8%) Query 1 EVLAHRLGLIPFKVNPKKLKFRNPNQ-ELSEENSLKFKMHVKCS-----------PGDLK 48 E+LAHRLGLIP + +P+ ++R+ + E +E ++L+F+++VKC+ P +L Sbjct 104 EILAHRLGLIPIRADPRLFEYRSADDAEGTEIDTLQFELNVKCTRNPRASKDCSDPNELY 163 Query 49 PHQKSMPVYARDLKWIPMSERQKQKFAQDPPAPVHPDILITKLRPGQEIELFGFLEKGLG 108 + K VY +KW+P + DPP PVH DILI +LRPGQEI + KG+G Sbjct 164 LNHK---VYTGHMKWLPQGNQVDLFPETDPPRPVHKDILIAQLRPGQEINVIMHCVKGIG 220 Query 109 KTHAKWSPVATAVYRLEPEFVFTSPIEGEEAKELKELCPMGVFDIEDSTGRAYAKF--PR 166 K HAK+SPVATA YRL PE S IEGE A +L+ GV +++ G+ A+ R Sbjct 221 KDHAKFSPVATASYRLLPEVTLLSSIEGELADKLQGCFSPGVISVDEVNGKRVARVENAR 280 Query 167 NCTTCRACL--ERFENQLQLNKIPDQFIFSIESTG 199 T R + +N +++ ++ D +IFS+ESTG Sbjct 281 MDTCSREIFRHDDLKNLVRMARVRDHYIFSVESTG 315 > tpv:TP02_0766 DNA-directed RNA polymerase I; K03027 DNA-directed RNA polymerases I and III subunit RPAC1 Length=303 Score = 149 bits (375), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 81/199 (40%), Positives = 119/199 (59%), Gaps = 24/199 (12%) Query 1 EVLAHRLGLIPFKVNPK----KLKFRNPNQELSEENSLKFKMHVKCSPGDLKPHQKSMPV 56 E+LAHRLGLIPF ++P K F+ +E++++NS+ FK+ VK + D + S + Sbjct 88 ELLAHRLGLIPFAIDPDLFNFKSNFKTNCEEINDKNSVCFKLKVKYNKFDQSDYLSSNSL 147 Query 57 YARDLKWIPMSERQKQKFAQDPPAPVHPDILITKLRPGQEIELFGFLEKGLGKTHAKWSP 116 +D +PP PV+ DILITKL PGQEI+L +LEKG+GK H+KWSP Sbjct 148 MFKD----------------NPPKPVYDDILITKLAPGQEIDLNMYLEKGIGKVHSKWSP 191 Query 117 VATAVYRLEPEFVFTS--PIEGEEAKELKELCPMGVFDIEDSTGRAYAKFPRNCTTCRAC 174 V+TAVY+ P+ F++ + E K L ++CPM VF S G + P NCT+CR C Sbjct 192 VSTAVYKFMPKIEFSTEHKLTANEKKMLPKICPMNVFSF--SKGEVNIENPLNCTSCRRC 249 Query 175 LERFENQLQLNKIPDQFIF 193 LE + ++ ++K+ + IF Sbjct 250 LELYPKKIIISKLTNHIIF 268 > hsa:9533 POLR1C, RPA39, RPA40, RPA5, RPAC1, TCS3; polymerase (RNA) I polypeptide C, 30kDa; K03027 DNA-directed RNA polymerases I and III subunit RPAC1 Length=342 Score = 142 bits (359), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 80/205 (39%), Positives = 118/205 (57%), Gaps = 14/205 (6%) Query 1 EVLAHRLGLIPFKVNPKKLKFRNP-NQELSEENSLKFKMHVKCSPGDLKPHQKSMP---- 55 E+LAHRLGLIP +P+ ++RN ++E +E ++L+F++ V+C+ S P Sbjct 104 EILAHRLGLIPIHADPRLFEYRNQGDEEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELY 163 Query 56 ----VYARDLKWIPMSERQKQKFAQDPPAPVHPDILITKLRPGQEIELFGFLEKGLGKTH 111 VY R + WIP+ Q F + PVH DILI +LRPGQEI+L KG+GK H Sbjct 164 VNHKVYTRHMTWIPLGN-QADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDH 222 Query 112 AKWSPVATAVYRLEPEFVFTSPIEGEEAKELKELCPMGVFDIEDSTGRAYAKF--PRNCT 169 AK+SPVATA YRL P+ P+EGE A+EL GV ++++ G+ A+ PR T Sbjct 223 AKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFSPGVIEVQEVQGKKVARVANPRLDT 282 Query 170 TCRACL--ERFENQLQLNKIPDQFI 192 R E+ + ++L ++ D +I Sbjct 283 FSREIFRNEKLKKVVRLARVRDHYI 307 > cel:H43I07.2 hypothetical protein; K03027 DNA-directed RNA polymerases I and III subunit RPAC1 Length=366 Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 85/227 (37%), Positives = 117/227 (51%), Gaps = 26/227 (11%) Query 1 EVLAHRLGLIPFKVNPKKLKF--------RNPNQELSEE------NSLKFKMHVKCS--- 43 EVL HRLGL+P +V+P+ +F + EE +L FK++V C+ Sbjct 111 EVLCHRLGLLPLRVDPRGFQFPKEKVVGINEKGVDCDEEPEGDPAKNLIFKINVSCTKNR 170 Query 44 ---PGDLKPHQ--KSMPVYARDLKWIPMSERQKQKFAQDPPAPVHPDILITKLRPGQEIE 98 P P Q + VY+R +W+P+++++ Q + P V DIL+ KLRPGQEIE Sbjct 171 NAVPTATDPKQLYHNSSVYSRAFEWVPIADQKTQFTEEAHPRMVSDDILVAKLRPGQEIE 230 Query 99 LFGFLEKGLGKTHAKWSPVATAVYRLEPEFVFTSPIEGEEAKELKELCPMGVFDIEDSTG 158 KG+G+ HAK+SPVATA YRL P + I GE A+ LK + GV IE Sbjct 231 ASCHAVKGIGRDHAKFSPVATASYRLLPTIRLNAEISGEAAERLKSVFSEGVIAIEKKGA 290 Query 159 R--AYAKFPRNCTTCRACL--ERFENQLQLNKIPDQFIFSIESTGSV 201 + A K R T R E +QL K FIFS+ESTG++ Sbjct 291 KRIAVVKDARKDTCSRNVFRHEDLSKVVQLGKNKQHFIFSVESTGAL 337 > ath:AT2G15430 NRPB3; NRPB3; DNA binding / DNA-directed RNA polymerase/ protein dimerization; K03011 DNA-directed RNA polymerase II subunit RPB3 Length=319 Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 63/216 (29%), Positives = 98/216 (45%), Gaps = 19/216 (8%) Query 1 EVLAHRLGLIPFKV-NPKKLKFRNPNQELSEEN-----SLKFKMHVKCSPGDLKPHQKSM 54 E +AHRLGLIP ++F + S++F++ KC D S Sbjct 65 EFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVT-DQTLDVTSR 123 Query 55 PVYARDLKWIPMSERQKQKFAQDPPAPVHPDILITKLRPGQEIELFGFLEKGLGKTHAKW 114 +Y+ D P+ + + H I+I KLR GQE++L KG+GK HAKW Sbjct 124 DLYSADPTVTPVDFTIDSSVSD---SSEHKGIIIVKLRRGQELKLRAIARKGIGKDHAKW 180 Query 115 SPVATAVYRLEPEFVFT----SPIEGEEAKELKELCPMGVFDIEDSTGRAYAKFPRNCTT 170 SP AT + EP+ + + EE +L E P VF ++ T + P T Sbjct 181 SPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPVTRQVVVVDPEAYTY 240 Query 171 CRACLERFENQ-----LQLNKIPDQFIFSIESTGSV 201 +++ E ++++ D FIF++ESTG+V Sbjct 241 DEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAV 276 > cpv:cgd1_2710 RNA polymerase II B3 subunit ; K03011 DNA-directed RNA polymerase II subunit RPB3 Length=355 Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 65/239 (27%), Positives = 104/239 (43%), Gaps = 44/239 (18%) Query 1 EVLAHRLGLIPF-KVNPKKLKFRN--PNQELSEENSLKFKMHVKCSPGDLK--PHQKSMP 55 E + HR+GLIP N + F++ QE + S+++ + V C G + H P Sbjct 65 EFIVHRMGLIPLDSTNIRDFNFKDRCECQERCNKCSVEYLLDVTCEGGATRNVTHYDIQP 124 Query 56 VYARDLKWIPMSERQKQKFAQDPPAPVHPDILITKLRPGQEIELFGFLEKGLGKTHAKWS 115 V L +P+ ++ D ++ ILI KL PGQ I + KG+GK HAKW Sbjct 125 VATSTLVPMPVPKKD------DSVDGMNNGILIAKLGPGQRIAMRMTACKGIGKFHAKWI 178 Query 116 PVATAVYRLEPE----FVFTSPIEGEEAKELKELCPMGVFDIEDSTGRAYAKFPRN---- 167 PV+ A + E + + +S + ++ KE+ CP VF + ST + +N Sbjct 179 PVSVATFTNEADVRINYSLSSNLTLKQRKEIVNCCPKDVFALGGSTSKTEYALNKNSAYS 238 Query 168 ------------------CTTCRACLERFENQLQLNKI-------PDQFIFSIESTGSV 201 C C C+ +N +N + PD+F F +ESTG++ Sbjct 239 TKTKTEELPDLEVVSSKSCIFCNECVNLTKNYGYINPVLIRVDTKPDKFHFLVESTGAL 297 > xla:432060 polr2c, MGC81245; polymerase (RNA) II (DNA directed) polypeptide C, 33kDa; K03011 DNA-directed RNA polymerase II subunit RPB3 Length=275 Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 48/132 (36%), Positives = 72/132 (54%), Gaps = 9/132 (6%) Query 1 EVLAHRLGLIPFKVNP--KKLKFRN--PNQELSEENSLKFKMHVKCSPGDLKPHQKSMPV 56 E +AHR+GLIP + KL++ E E S++F + V+C+ D H S + Sbjct 62 EFIAHRVGLIPLTSDDIVDKLQYSRDCTCDEFCPECSVEFTLDVRCTE-DQTRHVTSRDL 120 Query 57 YARDLKWIPMSERQKQKFAQDPPAPV-HPDILITKLRPGQEIELFGFLEKGLGKTHAKWS 115 + +L+ IP++ R + DP V DILI KLR GQE+ L + +KG GK HAKW+ Sbjct 121 VSNNLRVIPVTSRSRD---NDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177 Query 116 PVATAVYRLEPE 127 P A + +P+ Sbjct 178 PTAGVAFEYDPD 189 > mmu:20021 Polr2c, 33kDa, MGC118242, RPB3, Rpo2-3, mRBP31; polymerase (RNA) II (DNA directed) polypeptide C (EC:2.7.7.6); K03011 DNA-directed RNA polymerase II subunit RPB3 Length=275 Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 48/132 (36%), Positives = 71/132 (53%), Gaps = 9/132 (6%) Query 1 EVLAHRLGLIPFKVNP--KKLKFRN--PNQELSEENSLKFKMHVKCSPGDLKPHQKSMPV 56 E +AHRLGLIP + KL++ +E E S++F + V+C+ D H S + Sbjct 62 EFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNE-DQTRHVTSRDL 120 Query 57 YARDLKWIPMSERQKQKFAQDPPAPV-HPDILITKLRPGQEIELFGFLEKGLGKTHAKWS 115 + + IP++ R + DP V DILI KLR GQE+ L + +KG GK HAKW+ Sbjct 121 ISNSPRVIPVTSRNRD---NDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177 Query 116 PVATAVYRLEPE 127 P A + +P+ Sbjct 178 PTAGVAFEYDPD 189 > hsa:5432 POLR2C, RPB3, RPB31, hRPB33, hsRPB3; polymerase (RNA) II (DNA directed) polypeptide C, 33kDa (EC:2.7.7.6); K03011 DNA-directed RNA polymerase II subunit RPB3 Length=275 Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 48/132 (36%), Positives = 71/132 (53%), Gaps = 9/132 (6%) Query 1 EVLAHRLGLIPFKVNP--KKLKFRN--PNQELSEENSLKFKMHVKCSPGDLKPHQKSMPV 56 E +AHRLGLIP + KL++ +E E S++F + V+C+ D H S + Sbjct 62 EFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNE-DQTRHVTSRDL 120 Query 57 YARDLKWIPMSERQKQKFAQDPPAPV-HPDILITKLRPGQEIELFGFLEKGLGKTHAKWS 115 + + IP++ R + DP V DILI KLR GQE+ L + +KG GK HAKW+ Sbjct 121 ISNSPRVIPVTSRNRD---NDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177 Query 116 PVATAVYRLEPE 127 P A + +P+ Sbjct 178 PTAGVAFEYDPD 189 > tgo:TGME49_038190 DNA-directed RNA polymerase II, putative (EC:2.7.7.6); K03011 DNA-directed RNA polymerase II subunit RPB3 Length=484 Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 61/225 (27%), Positives = 93/225 (41%), Gaps = 29/225 (12%) Query 1 EVLAHRLGLIPFKVNPKKLKFRNPNQ----ELSEENSLKFKMHVKCSPGDLKPHQKSMPV 56 E ++HRLGL+P + + +F N + + S+++ + V C L + + Sbjct 206 EYISHRLGLLPID-STRVAEFVNRDDCDCADHCSRCSVQYALDVVCERDSLLVTHRD--I 262 Query 57 YARDLKWIPMSERQKQKFAQDPPAPV--------HPDILITKLRPGQEIELFGFLEKGLG 108 A + + ++ P P+ I I KLR Q + + KG+G Sbjct 263 VADNARGASLASAGFLDLGCPMPVPLLREMQEKEMDGIPIVKLRKNQSVNMRMTATKGIG 322 Query 109 KTHAKWSPVATAVYRLEPEFVFTSPIEGEEAKELKE----LCPMGVFDIEDSTGRAYAKF 164 K HAKWSPVATA Y+ EPE F + E+K CP VF D T Sbjct 323 KVHAKWSPVATASYKFEPEIAFEEDLLARAPAEVKRQIAASCPREVFSFIDDTATGGTGV 382 Query 165 PR-----NCTTCRACLER-----FENQLQLNKIPDQFIFSIESTG 199 R NC C C + F +++ +F F++ESTG Sbjct 383 LRVENKMNCIFCDQCKVKAQELGFRRLVRVEPNERKFHFTVESTG 427 > ath:AT2G15400 NRPE3B; NRPE3B; DNA binding / DNA-directed RNA polymerase/ protein dimerization Length=235 Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 81/185 (43%), Gaps = 44/185 (23%) Query 1 EVLAHRLGLIPFKVNPKKLKFR-------NPNQELSEENSLKFKMHVKCSPGDLKPHQKS 53 E +A RL LIP + + + R E E S++F + KC ++ Sbjct 65 EFIAQRLSLIPL-TSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVT------DQT 117 Query 54 MPVYARDLKWIPMSERQKQKFAQDPPA-PV-------------HPDILITKLRPGQEIEL 99 + V +RDL ++ DP PV H I+I KLR GQE++L Sbjct 118 LDVTSRDL------------YSADPTVTPVDFTSNSSTSDSSEHKGIIIAKLRRGQELKL 165 Query 100 FGFLEKGLGKTHAKWSPVATAVYRLEPEFVFT----SPIEGEEAKELKELCPMGVFDIED 155 KG+GK HAKWSP AT Y EP+ + + + EE +L E P VF I+ Sbjct 166 KALARKGIGKDHAKWSPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDP 225 Query 156 STGRA 160 TG+ Sbjct 226 VTGQV 230 > dre:334669 polr2c, wu:fk48d01, zgc:56285; polymerase (RNA) II (DNA directed) polypeptide C (EC:2.7.7.6); K03011 DNA-directed RNA polymerase II subunit RPB3 Length=275 Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/180 (31%), Positives = 87/180 (48%), Gaps = 14/180 (7%) Query 1 EVLAHRLGLIPFKVNP--KKLKFRN--PNQELSEENSLKFKMHVKCSPGDLKPHQKSMPV 56 E +AHR+GLIP + K+++ + E S++ + V+C+ D H S + Sbjct 62 EFVAHRVGLIPLTSDDIVDKMQYSRDCTCDDFCPECSVELTLDVRCTE-DQTRHVTSRDL 120 Query 57 YARDLKWIPMSERQKQKFAQDPPAPV-HPDILITKLRPGQEIELFGFLEKGLGKTHAKWS 115 + + + IP++ R + DP V DIL+ KLR GQE+ L + +KG GK HAKW+ Sbjct 121 LSNNPRVIPVTSRSRDN---DPNDYVEQDDILLVKLRKGQELRLRAYAKKGFGKEHAKWN 177 Query 116 PVATAVYRLEPEFVF---TSPIEGEEAK-ELKELCPMGVFDIEDSTGRAYAKFPRNCTTC 171 P A + +P+ PI E K E E+ GV D G+ +F N +C Sbjct 178 PTAGVAFEYDPDNALRHTVYPIPQEWPKSEYSEIEEDGVQAQYDPNGKP-ERFYYNVESC 236 > cel:C36B1.3 rpb-3; RNA Polymerase II (B) subunit family member (rpb-3); K03011 DNA-directed RNA polymerase II subunit RPB3 Length=282 Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 54/208 (25%), Positives = 94/208 (45%), Gaps = 29/208 (13%) Query 1 EVLAHRLGLIPF--KVNPKKLKFRNPNQ--ELSEENSLKFKMHVKCSPGDL--KPHQKSM 54 E +AHR+GLIPF + +K+++ + E +E S+ F + +KC + M Sbjct 62 EFIAHRMGLIPFISDYHVEKMQYTRDCECAEFCDECSIPFILQMKCKDEATLAVTTEHLM 121 Query 55 PVYARDLKWIPMSERQ-KQKFAQDPPAPVHPDILITKLRPGQEIELFGFLEKGLGKTHAK 113 P++ D P + +++ + +ILI KLR GQE+ L +++KG GK HAK Sbjct 122 PMHNLDTTVRPACGKALRERGSTRDEFHNREEILIVKLRKGQELNLKAYVKKGFGKEHAK 181 Query 114 WSPVATAVYRLEPEFVFTSPIEGEEAKELKELCPMGVFDIEDSTGRAYAKFPRNCTTCRA 173 W+P + +P+ I ++E+ ++ P + T A Sbjct 182 WNPTCGVAFEYDPDNALRHTIYP---------------NVEEWPRSDHSSLPEDSTEKEA 226 Query 174 CLERFENQLQLNKIPDQFIFSIESTGSV 201 E + P++F FSIE TG++ Sbjct 227 PFEP-------DNKPNKFWFSIEGTGAL 247 > tpv:TP01_0029 DNA-directed RNA polymerase II; K03011 DNA-directed RNA polymerase II subunit RPB3 Length=354 Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 68/244 (27%), Positives = 100/244 (40%), Gaps = 54/244 (22%) Query 1 EVLAHRLGLIPFKVN-PKKLKFRNPNQ--ELSEENSLKFKMHVKCSPGDLK--------- 48 E ++HRLGL+P + +FR+ Q + + ++ + + V C D + Sbjct 65 EYISHRLGLLPIDSTLASEFEFRDRCQCTDKCAKCTVDYTLDVSCKDSDSRVVTHFDIVP 124 Query 49 --PHQKSMPVYARDLKW-IPMSERQKQKFAQDPPAPVHPDILITKLRPGQEIELFGFLEK 105 H KS +Y ++L IP ++ A D I I KL+ G I + K Sbjct 125 DDTHSKS--IYGKNLPMPIPRADVTNFNGATD-------GIPIVKLKRGHSINMKLTASK 175 Query 106 GLGKTHAKWSPVATAVYRLEPEFVFTSP----IEGEEAKELKELCPMGVFDIE------- 154 GLGK HAKW VA Y++EP F F S + EE + CP VF Sbjct 176 GLGKFHAKW-IVANVNYKMEPRFSFNSSLMEQLSSEEKAGIAASCPRNVFKYTGVRSEAP 234 Query 155 ------------DSTGRAYAKFPRNCTTCRACLE--RFENQLQLNKI-PDQ--FIFSIES 197 D+ G + C C C+ R L +I PD+ F F+IES Sbjct 235 SFLGPSDKTFKLDAAG-LHVVDKLACIYCDECINYCRELGHKDLIRIQPDESKFHFTIES 293 Query 198 TGSV 201 TG++ Sbjct 294 TGAI 297 > bbo:BBOV_I002600 19.m02023; DNA-directed RNA polymerase II (EC:2.7.7.6); K03011 DNA-directed RNA polymerase II subunit RPB3 Length=382 Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 62/265 (23%), Positives = 106/265 (40%), Gaps = 67/265 (25%) Query 1 EVLAHRLGLIPFKVN-PKKLKFRN--PNQELSEENSLKFKMHVKCSPG---------DLK 48 E +AHRLGL+P + + + ++R+ + ++++ + VKC +L Sbjct 65 EYIAHRLGLLPIESSSARNFEYRDKCTCSDKCSRCTVEYSLDVKCMDDTRVVTHYDINLD 124 Query 49 PHQKS-------MPV--------------YARDLKWIPMSERQKQKFAQDPPAPVHPDIL 87 + S MPV D + + S + Q+P P H + Sbjct 125 SWENSRGNVNAPMPVPRPSADALGNAPGDQGSDPQRVNSSGNATARNVQNPDGP-HTGAV 183 Query 88 -------------ITKLRPGQEIELFGFLEKGLGKTHAKWSPVATAVYRLEPEFVFTSPI 134 I KL+ GQ + L KGLGK HAKW VA Y++EP + Sbjct 184 DRKSGSVPTGGIPIVKLKRGQCLSLKMTATKGLGKFHAKWM-VANVAYKMEPVITINRQV 242 Query 135 EGE----EAKELKELCPMGVFDIEDSTGRAYAKFPR---------NCTTCRACLER---- 177 + E ++ + CP VF + + G AY+ + NC C CL + Sbjct 243 AEKMNLNEKTQIVQSCPRKVFKLSNPHG-AYSTATKAEIVIDNNLNCIYCDECLNQAREM 301 Query 178 -FENQLQLNKIPDQFIFSIESTGSV 201 + + +++ +F F+IES G++ Sbjct 302 GYRDLIRVQPDETKFHFTIESNGAI 326 > sce:YIL021W RPB3; B44; K03011 DNA-directed RNA polymerase II subunit RPB3 Length=318 Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 10/129 (7%) Query 1 EVLAHRLGLIPFK-VNPKKLKFRNPNQELSEENSLKFKMHVKCSPGDLKPHQKSMPVYAR 59 E +AHRLGLIP + ++ ++L++ E++ K + + + + VY++ Sbjct 61 EFIAHRLGLIPLQSMDIEQLEYSRDC--FCEDHCDKCSVVLTLQA--FGESESTTNVYSK 116 Query 60 DLKWIP--MSERQKQKFAQDPPAPVHPDILITKLRPGQEIELFGFLEKGLGKTHAKWSPV 117 DL + M QD +LI KLR GQE++L +KG+ K HAKW P Sbjct 117 DLVIVSNLMGRNIGHPIIQDKEGN---GVLICKLRKGQELKLTCVAKKGIAKEHAKWGPA 173 Query 118 ATAVYRLEP 126 A + +P Sbjct 174 AAIEFEYDP 182 > pfa:PFI1130c DNA-directed RNA polymerase II, putative (EC:2.7.7.6); K03011 DNA-directed RNA polymerase II subunit RPB3 Length=335 Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 39/156 (25%), Positives = 69/156 (44%), Gaps = 25/156 (16%) Query 1 EVLAHRLGLIPF---KVNPKKLKFRNPNQELSEENSLKFKMHVKCSPGDLKPHQKSMPVY 57 E +AHRLGLIP VN + + + +E + ++++ + VKC+ H + V Sbjct 66 EFIAHRLGLIPIDSRNVNNYEFREKCKCKETCSKCTIQYIIEVKCN------HSNKIDVS 119 Query 58 ARDLKWI--------PMSERQKQKFAQDPPAPVHPDILITKLRPGQEIELFGFLEKGLGK 109 D++ + P+ K +++ I I L Q + + KG+GK Sbjct 120 HYDIESLEHEPNVPMPIPHGNKNSVSENA-------IPIVTLSKNQTLHMKLIATKGIGK 172 Query 110 THAKWSPVATAVYRLEPEFVFTSPIEGEEAKELKEL 145 HAKW P A YR++ + + + + + E K L Sbjct 173 MHAKWIP-ANVSYRIDHKVLIKHNLIDKLSNEHKLL 207 > ath:AT3G14810 MSL5; MSL5 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 5) Length=881 Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 3/44 (6%) Query 65 PMSERQKQKF-AQDPPAPVHPDILITKLRPGQEIELF--GFLEK 105 PM R K K QDPP P HP I T+++ G+ +F GFL K Sbjct 187 PMLSRNKTKSRLQDPPTPTHPAIDKTEMKSGRRSGIFKSGFLGK 230 > xla:100158303 hypothetical protein LOC100158303 Length=211 Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 0/41 (0%) Query 117 VATAVYRLEPEFVFTSPIEGEEAKELKELCPMGVFDIEDST 157 V TA+ RLE + S + G EAK L P+G F I DS+ Sbjct 43 VETALERLEASGYYWSTLSGTEAKNLLSDQPVGSFLIRDSS 83 > xla:398305 rnf103-a, kf1, rnf103, x-kf-1a, zfp103; ring finger protein 103 Length=678 Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust. Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%) Query 161 YAKFPRN---CTTCRACLERFENQLQLNKIPDQFIF 193 +A +P N CT C CLE FEN+ L +P +F Sbjct 602 WATWPGNMLHCTECVVCLENFENRSLLMGLPCGHVF 637 > xla:414533 socs3, MGC81248, atod4, cis3, cish3, socs-3, ssi-3, ssi3, xsocs3; suppressor of cytokine signaling 3 Length=199 Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 0/52 (0%) Query 110 THAKWSPVATAVYRLEPEFVFTSPIEGEEAKELKELCPMGVFDIEDSTGRAY 161 + ++++ V TAV +L+ + S + G +A L P G F I DS+ R + Sbjct 25 SRSEYNLVLTAVRKLQESGFYWSTLTGSQANLLLSTEPAGTFLIRDSSDRRH 76 > xla:380467 socs3, MGC64393; suppressor of cytokine signaling 3; K04696 suppressor of cytokine signaling 3 Length=199 Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust. Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 0/50 (0%) Query 112 AKWSPVATAVYRLEPEFVFTSPIEGEEAKELKELCPMGVFDIEDSTGRAY 161 ++++ V TAV +L+ + S + G +A L P G F I DS+ R + Sbjct 27 SEYNLVLTAVRKLQESGFYWSTVTGSQANLLLSTEPAGTFLIRDSSDRRH 76 > mmu:18415 Hspa4l, 94kDa, AI461691, APG-1, MGC117843, Osp94; heat shock protein 4 like; K09485 heat shock protein 110kDa Length=838 Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 13/88 (14%) Query 108 GKTHAKWSPVATAVYRLEPEFVFTSPIEGE-----------EAKELKELCPMGVFDIEDS 156 GK + P+ +++YR + + S IE E E + K V+D D Sbjct 575 GKIKSIDLPIQSSLYRQLTQDLLNSYIENEGKMIMQDKLEKERNDAKNAVEEYVYDFRDK 634 Query 157 TGRAYAKF--PRNCTTCRACLERFENQL 182 G Y KF P + A LE EN L Sbjct 635 LGTVYEKFITPEDMNKLSAMLEDTENWL 662 > dre:556874 col6a3, wu:fb06e12, wu:fs74g09; collagen, type VI, alpha 3 Length=12640 Score = 30.0 bits (66), Expect = 5.5, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%) Query 93 PGQEIELFGFLEKGLGKTHAKWSPVATAVYRLEPEFVFTSPIEGE 137 P ++++ FG L +G +A S + T + P F+F P+ GE Sbjct 945 PAEDLKNFGVLSIAIGIKNALESELQTIAF--SPRFIFNLPVSGE 987 > xla:446526 snx6, MGC80251; sorting nexin 6 Length=406 Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%) Query 28 LSEENSLKFKMHVKCSPGDLKPHQKSMPVYARDLKWIPMSERQKQKFAQD--PPAPVHPD 85 LSE + +KF +H K S + K ++ S+ + W+ S + +++A PPAP PD Sbjct 40 LSERDKVKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENEEYAGYIIPPAPPRPD 99 Query 86 I 86 Sbjct 100 F 100 > xla:432136 enosf1, MGC80074; enolase superfamily member 1 Length=445 Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 2/61 (3%) Query 19 LKFRNPNQELSEENSLKFKMHVKCSPGDLKPHQ--KSMPVYARDLKWIPMSERQKQKFAQ 76 + FR L+EE +LK + K D + H P Y W+ S+ Q +K Sbjct 150 IDFRYITDALTEEEALKILQNGKQGQRDREEHMLTSGYPAYTTSCAWLGYSDEQLKKLCS 209 Query 77 D 77 D Sbjct 210 D 210 > xla:496311 hypothetical LOC496311 Length=400 Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%) Query 28 LSEENSLKFKMHVKCSPGDLKPHQKSMPVYARDLKWIPMSERQKQKFAQ--DPPAPVHPD 85 LSE + +KF +H K + K + + + D W+ S + + +A PPAP PD Sbjct 35 LSERDKVKFTVHTKTKLPNFKNPEFDVARFHEDFIWLHDSLIETEDYAGLIIPPAPAKPD 94 Lambda K H 0.319 0.137 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 6060209704 Database: egene_temp_file_orthology_annotation_similarity_blast_database_866 Posted date: Sep 17, 2011 2:57 PM Number of letters in database: 82,071,388 Number of sequences in database: 164,496 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40