bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
164,496 sequences; 82,071,388 total letters
Query= Eten_1653_orf1
Length=201
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_067390 DNA-directed RNA polymerases I and III subun... 305 8e-83
cpv:cgd8_300 RNA polymerase III C5 subunit ; K03027 DNA-direct... 233 5e-61
bbo:BBOV_III011540 17.m07985; DNA-directed RNA polymerase, alp... 223 4e-58
pfa:PF11_0445 DNA-directed RNA polymerase I, putative; K03027 ... 195 7e-50
ath:AT1G60620 ATRPAC43; DNA binding / DNA-directed RNA polymer... 179 6e-45
ath:AT1G60850 ATRPAC42; DNA binding / DNA-directed RNA polymer... 162 6e-40
dre:393538 polr1c, MGC65973, zgc:65973; polymerase (RNA) I pol... 159 5e-39
sce:YPR110C RPC40, RPC5; AC40; K03027 DNA-directed RNA polymer... 157 2e-38
mmu:20016 Polr1c, 40kDa, AA409007, AA959927, AL024089, MGC1611... 154 3e-37
xla:432333 polr1c, MGC78824, rpa39, rpa40, rpa5, rpac1; polyme... 149 4e-36
tpv:TP02_0766 DNA-directed RNA polymerase I; K03027 DNA-direct... 149 9e-36
hsa:9533 POLR1C, RPA39, RPA40, RPA5, RPAC1, TCS3; polymerase (... 142 6e-34
cel:H43I07.2 hypothetical protein; K03027 DNA-directed RNA pol... 131 2e-30
ath:AT2G15430 NRPB3; NRPB3; DNA binding / DNA-directed RNA pol... 87.4 3e-17
cpv:cgd1_2710 RNA polymerase II B3 subunit ; K03011 DNA-direct... 83.6 4e-16
xla:432060 polr2c, MGC81245; polymerase (RNA) II (DNA directed... 80.5 4e-15
mmu:20021 Polr2c, 33kDa, MGC118242, RPB3, Rpo2-3, mRBP31; poly... 77.4 3e-14
hsa:5432 POLR2C, RPB3, RPB31, hRPB33, hsRPB3; polymerase (RNA)... 76.6 5e-14
tgo:TGME49_038190 DNA-directed RNA polymerase II, putative (EC... 73.2 6e-13
ath:AT2G15400 NRPE3B; NRPE3B; DNA binding / DNA-directed RNA p... 72.4 1e-12
dre:334669 polr2c, wu:fk48d01, zgc:56285; polymerase (RNA) II ... 71.6 2e-12
cel:C36B1.3 rpb-3; RNA Polymerase II (B) subunit family member... 65.9 9e-11
tpv:TP01_0029 DNA-directed RNA polymerase II; K03011 DNA-direc... 62.0 1e-09
bbo:BBOV_I002600 19.m02023; DNA-directed RNA polymerase II (EC... 55.8 1e-07
sce:YIL021W RPB3; B44; K03011 DNA-directed RNA polymerase II s... 52.8 8e-07
pfa:PFI1130c DNA-directed RNA polymerase II, putative (EC:2.7.... 45.8 9e-05
ath:AT3G14810 MSL5; MSL5 (MECHANOSENSITIVE CHANNEL OF SMALL CO... 34.3 0.26
xla:100158303 hypothetical protein LOC100158303 32.3 1.0
xla:398305 rnf103-a, kf1, rnf103, x-kf-1a, zfp103; ring finger... 31.6 1.9
xla:414533 socs3, MGC81248, atod4, cis3, cish3, socs-3, ssi-3,... 31.6 2.1
xla:380467 socs3, MGC64393; suppressor of cytokine signaling 3... 31.2 2.5
mmu:18415 Hspa4l, 94kDa, AI461691, APG-1, MGC117843, Osp94; he... 30.8 3.0
dre:556874 col6a3, wu:fb06e12, wu:fs74g09; collagen, type VI, ... 30.0 5.5
xla:446526 snx6, MGC80251; sorting nexin 6 29.6
xla:432136 enosf1, MGC80074; enolase superfamily member 1 29.6
xla:496311 hypothetical LOC496311 29.3 9.0
> tgo:TGME49_067390 DNA-directed RNA polymerases I and III subunit
RPAC1, putative (EC:2.7.7.6); K03027 DNA-directed RNA polymerases
I and III subunit RPAC1
Length=346
Score = 305 bits (781), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 139/201 (69%), Positives = 165/201 (82%), Gaps = 0/201 (0%)
Query 1 EVLAHRLGLIPFKVNPKKLKFRNPNQELSEENSLKFKMHVKCSPGDLKPHQKSMPVYARD 60
EVLAHRLGLIPF V+P L +R PNQE+++EN+L+ +HVKC+ L PHQ S+PVYA+
Sbjct 114 EVLAHRLGLIPFIVDPTALNYRQPNQEVTDENALRVSLHVKCTEQSLGPHQTSLPVYAKH 173
Query 61 LKWIPMSERQKQKFAQDPPAPVHPDILITKLRPGQEIELFGFLEKGLGKTHAKWSPVATA 120
+KW PMS QK+ FA +PP VHPDILITKLRPGQEIEL +LEKG+GKTHAKWSPV TA
Sbjct 174 IKWEPMSPSQKEAFAANPPRAVHPDILITKLRPGQEIELKAYLEKGVGKTHAKWSPVCTA 233
Query 121 VYRLEPEFVFTSPIEGEEAKELKELCPMGVFDIEDSTGRAYAKFPRNCTTCRACLERFEN 180
VYRLEPE VF I+GE+A +L LCPMGVFDIED+TG AYA++PRNCTTCRAC+ERF
Sbjct 234 VYRLEPEIVFKESIQGEDASDLCSLCPMGVFDIEDTTGEAYARYPRNCTTCRACIERFPK 293
Query 181 QLQLNKIPDQFIFSIESTGSV 201
+++L KI D FIFSIESTGSV
Sbjct 294 EIELRKIKDHFIFSIESTGSV 314
> cpv:cgd8_300 RNA polymerase III C5 subunit ; K03027 DNA-directed
RNA polymerases I and III subunit RPAC1
Length=344
Score = 233 bits (593), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 113/206 (54%), Positives = 151/206 (73%), Gaps = 6/206 (2%)
Query 1 EVLAHRLGLIPFKVNPKKLKFRNPNQELSEENSLKFKMHVKCSPGDLKPHQK---SMPVY 57
EVLAHRLGLIP ++P ++FRN +++L+E+NS+ FK++VKC+ D+ H+K S +Y
Sbjct 110 EVLAHRLGLIPMLIDPNTIEFRNEDEDLNEKNSVCFKLNVKCTKDDIN-HEKGITSKAIY 168
Query 58 ARDLKWIPMSERQKQKFAQDPPAPVHPDILITKLRPGQEIELFGFLEKGLGKTHAKWSPV 117
++DL WIP+S+ Q++KF + PP V DILITKLRPGQ IE + EK +G+ HAKWSPV
Sbjct 169 SKDLVWIPLSDNQRKKFGKTPPKVVTDDILITKLRPGQSIEAILYCEKNIGRVHAKWSPV 228
Query 118 ATAVYRLEPEFVF-TSPIEGEEAKELKE-LCPMGVFDIEDSTGRAYAKFPRNCTTCRACL 175
TA YRL PEF F PI G +A +L++ +CPM VFDIED TG A PRNCTTCRAC+
Sbjct 229 CTASYRLLPEFGFPNGPISGSDALKLRDTVCPMKVFDIEDVTGNAVPTNPRNCTTCRACI 288
Query 176 ERFENQLQLNKIPDQFIFSIESTGSV 201
E+F N+++L K FIFSIE+TG +
Sbjct 289 EKFPNKIKLLKDKFHFIFSIETTGCI 314
> bbo:BBOV_III011540 17.m07985; DNA-directed RNA polymerase, alpha
subunit, N terminal domain containing protein; K03027 DNA-directed
RNA polymerases I and III subunit RPAC1
Length=319
Score = 223 bits (568), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 104/203 (51%), Positives = 147/203 (72%), Gaps = 6/203 (2%)
Query 1 EVLAHRLGLIPFKVNPKKLKFRNPNQELSEENSLKFKMHVKCSPGDLKPHQKSMPVYARD 60
EVLAHRLGL+PF NP + +R+ N++LS++NS+ F + V+C L + ++PVYA D
Sbjct 89 EVLAHRLGLVPFDCNPDLIPYRD-NEDLSDKNSVCFHLKVECKKESL-AGRTNLPVYAGD 146
Query 61 LKWIPMSERQKQKFAQDPPAPVHPDILITKLRPGQEIELFGFLEKGLGKTHAKWSPVATA 120
+KW+P+S+ Q + F +PP P+H DIL+TKL PGQEI+L +LEKG+GKTHAKWSPV TA
Sbjct 147 MKWVPLSDEQAELFKDNPPKPIHKDILLTKLSPGQEIDLKAYLEKGIGKTHAKWSPVCTA 206
Query 121 VYRLEPEFVFT--SPIEGEEAKELKELCPMGVFDIEDSTGRAYAKFPRNCTTCRACLERF 178
VYR +P+ F+ P+ +E +EL ++CPMGVF + GR P NCT+CRACLERF
Sbjct 207 VYRFKPDITFSEDEPLTNDEVEELVQICPMGVFSAD--KGRITTIRPYNCTSCRACLERF 264
Query 179 ENQLQLNKIPDQFIFSIESTGSV 201
++ + K+ + FIFS+ESTG++
Sbjct 265 PKRVIIKKLSNHFIFSVESTGAI 287
> pfa:PF11_0445 DNA-directed RNA polymerase I, putative; K03027
DNA-directed RNA polymerases I and III subunit RPAC1
Length=333
Score = 195 bits (496), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 94/201 (46%), Positives = 134/201 (66%), Gaps = 4/201 (1%)
Query 1 EVLAHRLGLIPFKVNPKKLKFRNPNQELSEENSLKFKMHVKCSPGDLKPHQKSMPVYARD 60
E+L HRLGLIPFK + + ++ N++ + N FK+HVK S + +Y++D
Sbjct 103 EILCHRLGLIPFKFDADLINYKEDNEKYNHLNCFCFKLHVKFS-SKRTGNDNYQSIYSKD 161
Query 61 LKWIPMSERQKQKFAQDPPAPVHPDILITKLRPGQEIELFGFLEKGLGKTHAKWSPVATA 120
LKW P++E+Q+ KF ++PP V +ILITK+ GQEIEL FL+KG+GKTHAKWSPV TA
Sbjct 162 LKWCPINEQQRIKFEKNPPKVVDENILITKISSGQEIELICFLQKGIGKTHAKWSPVCTA 221
Query 121 VYRLEPEFVFTS--PIEGEEAKELKELCPMGVFDIEDSTGRAYAKFPRNCTTCRACLERF 178
VY++ P F F + + EE K+L +CP VFDIEDS + + K P +C+TCR C+E++
Sbjct 222 VYKMYPHFSFNTNEQLSYEEKKDLVNICPQKVFDIEDSQ-QIFVKNPLSCSTCRVCIEKY 280
Query 179 ENQLQLNKIPDQFIFSIESTG 199
++ K + FIF+IESTG
Sbjct 281 PKKISFQKEKNHFIFTIESTG 301
> ath:AT1G60620 ATRPAC43; DNA binding / DNA-directed RNA polymerase/
protein dimerization
Length=385
Score = 179 bits (454), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 103/229 (44%), Positives = 137/229 (59%), Gaps = 34/229 (14%)
Query 1 EVLAHRLGLIPFKVNPKKLKFRNPNQELSEENSLKFKMHVKCSPGDLKPHQKSMPVYARD 60
EVLAHRLGLIP +P+ ++ + N + +E+N++ FK+HVKC GD P +K V +
Sbjct 136 EVLAHRLGLIPIAADPRLFEYLSENDQPNEKNTIVFKLHVKCLKGD--PRRK---VLTSE 190
Query 61 LKWIPM-SERQKQ----------------------KFAQDPPAPVHPDILITKLRPGQEI 97
LKW+P SE K+ +FA++P P DILI KL PGQEI
Sbjct 191 LKWLPNGSELIKESGGSTTTPKTYTSFNHSQDSFPEFAENPIRPTLKDILIAKLGPGQEI 250
Query 98 ELFGFLEKGLGKTHAKWSPVATAVYRLEPEFVFTSPIEGEEAKELKELCPMGVFDIED-- 155
EL KG+GKTHAKWSPVATA YR+ PE V EG+ A+EL ++CP VFDIED
Sbjct 251 ELEAHAVKGIGKTHAKWSPVATAWYRMLPEVVLLKEFEGKHAEELVKVCPKKVFDIEDMG 310
Query 156 -STGRAYAKFPRNCTTCRACLE---RFENQLQLNKIPDQFIFSIESTGS 200
RA PR+C+ CR C+ +E+Q+ L ++ + FIF+IESTGS
Sbjct 311 QGRKRATVARPRDCSLCRECIRDGVEWEDQVDLRRVKNHFIFTIESTGS 359
> ath:AT1G60850 ATRPAC42; DNA binding / DNA-directed RNA polymerase/
protein dimerization
Length=375
Score = 162 bits (410), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 96/229 (41%), Positives = 126/229 (55%), Gaps = 33/229 (14%)
Query 1 EVLAHRLGLIPFKVNPKKLKFRNPNQELSEENSLKFKMHVKCSPGDLKPHQKSMPVYARD 60
EVLAHR+GLIP +P+ ++ + + + +E+N++ FK+HVKC +P K V D
Sbjct 129 EVLAHRMGLIPIAADPRLFEYLSEHDQANEKNTIVFKLHVKCPKN--RPRLK---VLTSD 183
Query 61 LKWIPM-------SERQKQK----------------FAQDPPAPVHPDILITKLRPGQEI 97
LKW+P SE + K FA +P P DILI KL PGQEI
Sbjct 184 LKWLPNGSELLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQEI 243
Query 98 ELFGFLEKGLGKTHAKWSPVATAVYRLEPEFVFTSPIEGEEAKELKELCPMGVFDIED-- 155
EL KG+GKTHAKWSPV TA YR+ PE V +E E A+ L +CP VFDIED
Sbjct 244 ELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELAERLVNVCPQNVFDIEDMG 303
Query 156 -STGRAYAKFPRNCTTCRACLE--RFENQLQLNKIPDQFIFSIESTGSV 201
RA PR CT C+ C+ + + L + + FIF+IESTGS+
Sbjct 304 KGKKRATVAQPRKCTLCKECVRDDDLVDHVDLGSVKNHFIFNIESTGSL 352
> dre:393538 polr1c, MGC65973, zgc:65973; polymerase (RNA) I polypeptide
C; K03027 DNA-directed RNA polymerases I and III
subunit RPAC1
Length=347
Score = 159 bits (403), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 87/212 (41%), Positives = 128/212 (60%), Gaps = 14/212 (6%)
Query 1 EVLAHRLGLIPFKVNPKKLKFRNP-NQELSEENSLKFKMHVKCSPGDLKPHQKSMP---- 55
E+LAHRLGL+P K +P+ ++RN +QE +E ++++ ++ VKC+ P S P
Sbjct 105 EILAHRLGLVPIKADPRLFEYRNSEDQEGTEIDTIQLQLKVKCTRNPRAPKDSSDPKELY 164
Query 56 ----VYARDLKWIPMSERQKQKFAQDPPAPVHPDILITKLRPGQEIELFGFLEKGLGKTH 111
+Y+ D+KW+P+ Q FA PVH DIL+ ++RPGQE+++ KG+GK H
Sbjct 165 LNHMIYSGDIKWLPIG-NQADVFADAKIGPVHGDILLAQVRPGQELDIVMHCVKGIGKDH 223
Query 112 AKWSPVATAVYRLEPEFVFTSPIEGEEAKELKELCPMGVFDIEDSTGRAYAKF--PRNCT 169
AK+SPVATA YRL PE IEGE+A+ LK GV ++E+ GR AK R T
Sbjct 224 AKFSPVATASYRLLPEITLLQTIEGEQAERLKRCFSPGVIELENVNGRKVAKVVNSRLDT 283
Query 170 TCRACL--ERFENQLQLNKIPDQFIFSIESTG 199
R L + ++ ++L ++ D FIFS+ESTG
Sbjct 284 CSREVLRHDDLKSLVKLGRVRDHFIFSVESTG 315
> sce:YPR110C RPC40, RPC5; AC40; K03027 DNA-directed RNA polymerases
I and III subunit RPAC1
Length=335
Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 87/215 (40%), Positives = 126/215 (58%), Gaps = 15/215 (6%)
Query 1 EVLAHRLGLIPFKVNPKKLKFRNPN----QELSEENSLKFKMHVKCSPGDLKPHQKSMP- 55
EVLAHR+GL+P KV+P L + + N ++ ++EN++ ++VKC+ P + P
Sbjct 95 EVLAHRIGLVPLKVDPDMLTWVDSNLPDDEKFTDENTIVLSLNVKCTRNPDAPKGSTDPK 154
Query 56 -------VYARDLKWIPMSERQKQKFAQDPPAPVHPDILITKLRPGQEIELFGFLEKGLG 108
VYARDLK+ P RQ FA P P PDIL+ KLRPGQEI L G+G
Sbjct 155 ELYNNAHVYARDLKFEPQG-RQSTTFADCPVVPADPDILLAKLRPGQEISLKAHCILGIG 213
Query 109 KTHAKWSPVATAVYRLEPEFVFTSPIEGEEAKELKELCPMGVFDIEDSTGRAYAKFPRNC 168
HAK+SPV+TA YRL P+ PI+GE A+ ++ P GV I++ + AY K R
Sbjct 214 GDHAKFSPVSTASYRLLPQINILQPIKGESARRFQKCFPPGVIGIDEGSDEAYVKDARKD 273
Query 169 TTCRACL--ERFENQLQLNKIPDQFIFSIESTGSV 201
T R L E F ++++L ++ + FIF++ES G++
Sbjct 274 TVSREVLRYEEFADKVKLGRVRNHFIFNVESAGAM 308
> mmu:20016 Polr1c, 40kDa, AA409007, AA959927, AL024089, MGC161175,
Polr1e, RPA40, Rpo1-1; polymerase (RNA) I polypeptide
C; K03027 DNA-directed RNA polymerases I and III subunit RPAC1
Length=346
Score = 154 bits (388), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 125/215 (58%), Gaps = 20/215 (9%)
Query 1 EVLAHRLGLIPFKVNPKKLKFRNPNQELSEE-NSLKFKMHVKCS-----------PGDLK 48
E+LAHRLGLIP +P+ ++RN +E E ++L+F++ V+C+ P +L
Sbjct 104 EILAHRLGLIPILADPRLFEYRNQGEEEGTEIDTLQFRLQVRCTRNPNAAKDSSDPNELY 163
Query 49 PHQKSMPVYARDLKWIPMSERQKQKFAQDPPAPVHPDILITKLRPGQEIELFGFLEKGLG 108
+ K VY R + W+P+ Q F + PVH DILI +LRPGQEI+L KG+G
Sbjct 164 VNHK---VYTRHMTWVPLGN-QADVFPEGTIRPVHDDILIAQLRPGQEIDLMMHCVKGIG 219
Query 109 KTHAKWSPVATAVYRLEPEFVFTSPIEGEEAKELKELCPMGVFDIEDSTGRAYAKF--PR 166
K HAK+SPVATA YRL P P+EGE A+EL + GV ++E+ G+ A+ R
Sbjct 220 KDHAKFSPVATASYRLLPAITLLEPVEGEAAEELSQCFSPGVIEVEEVQGKKVARVANAR 279
Query 167 NCTTCRACL--ERFENQLQLNKIPDQFIFSIESTG 199
T R E+ + ++L ++ D +IFS+ESTG
Sbjct 280 LDTFSREIFRHEKLKKAVRLARVRDHYIFSVESTG 314
> xla:432333 polr1c, MGC78824, rpa39, rpa40, rpa5, rpac1; polymerase
(RNA) I polypeptide C, 30kDa; K03027 DNA-directed RNA
polymerases I and III subunit RPAC1
Length=347
Score = 149 bits (377), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 126/215 (58%), Gaps = 19/215 (8%)
Query 1 EVLAHRLGLIPFKVNPKKLKFRNPNQ-ELSEENSLKFKMHVKCS-----------PGDLK 48
E+LAHRLGLIP + +P+ ++R+ + E +E ++L+F+++VKC+ P +L
Sbjct 104 EILAHRLGLIPIRADPRLFEYRSADDAEGTEIDTLQFELNVKCTRNPRASKDCSDPNELY 163
Query 49 PHQKSMPVYARDLKWIPMSERQKQKFAQDPPAPVHPDILITKLRPGQEIELFGFLEKGLG 108
+ K VY +KW+P + DPP PVH DILI +LRPGQEI + KG+G
Sbjct 164 LNHK---VYTGHMKWLPQGNQVDLFPETDPPRPVHKDILIAQLRPGQEINVIMHCVKGIG 220
Query 109 KTHAKWSPVATAVYRLEPEFVFTSPIEGEEAKELKELCPMGVFDIEDSTGRAYAKF--PR 166
K HAK+SPVATA YRL PE S IEGE A +L+ GV +++ G+ A+ R
Sbjct 221 KDHAKFSPVATASYRLLPEVTLLSSIEGELADKLQGCFSPGVISVDEVNGKRVARVENAR 280
Query 167 NCTTCRACL--ERFENQLQLNKIPDQFIFSIESTG 199
T R + +N +++ ++ D +IFS+ESTG
Sbjct 281 MDTCSREIFRHDDLKNLVRMARVRDHYIFSVESTG 315
> tpv:TP02_0766 DNA-directed RNA polymerase I; K03027 DNA-directed
RNA polymerases I and III subunit RPAC1
Length=303
Score = 149 bits (375), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 119/199 (59%), Gaps = 24/199 (12%)
Query 1 EVLAHRLGLIPFKVNPK----KLKFRNPNQELSEENSLKFKMHVKCSPGDLKPHQKSMPV 56
E+LAHRLGLIPF ++P K F+ +E++++NS+ FK+ VK + D + S +
Sbjct 88 ELLAHRLGLIPFAIDPDLFNFKSNFKTNCEEINDKNSVCFKLKVKYNKFDQSDYLSSNSL 147
Query 57 YARDLKWIPMSERQKQKFAQDPPAPVHPDILITKLRPGQEIELFGFLEKGLGKTHAKWSP 116
+D +PP PV+ DILITKL PGQEI+L +LEKG+GK H+KWSP
Sbjct 148 MFKD----------------NPPKPVYDDILITKLAPGQEIDLNMYLEKGIGKVHSKWSP 191
Query 117 VATAVYRLEPEFVFTS--PIEGEEAKELKELCPMGVFDIEDSTGRAYAKFPRNCTTCRAC 174
V+TAVY+ P+ F++ + E K L ++CPM VF S G + P NCT+CR C
Sbjct 192 VSTAVYKFMPKIEFSTEHKLTANEKKMLPKICPMNVFSF--SKGEVNIENPLNCTSCRRC 249
Query 175 LERFENQLQLNKIPDQFIF 193
LE + ++ ++K+ + IF
Sbjct 250 LELYPKKIIISKLTNHIIF 268
> hsa:9533 POLR1C, RPA39, RPA40, RPA5, RPAC1, TCS3; polymerase
(RNA) I polypeptide C, 30kDa; K03027 DNA-directed RNA polymerases
I and III subunit RPAC1
Length=342
Score = 142 bits (359), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 80/205 (39%), Positives = 118/205 (57%), Gaps = 14/205 (6%)
Query 1 EVLAHRLGLIPFKVNPKKLKFRNP-NQELSEENSLKFKMHVKCSPGDLKPHQKSMP---- 55
E+LAHRLGLIP +P+ ++RN ++E +E ++L+F++ V+C+ S P
Sbjct 104 EILAHRLGLIPIHADPRLFEYRNQGDEEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELY 163
Query 56 ----VYARDLKWIPMSERQKQKFAQDPPAPVHPDILITKLRPGQEIELFGFLEKGLGKTH 111
VY R + WIP+ Q F + PVH DILI +LRPGQEI+L KG+GK H
Sbjct 164 VNHKVYTRHMTWIPLGN-QADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDH 222
Query 112 AKWSPVATAVYRLEPEFVFTSPIEGEEAKELKELCPMGVFDIEDSTGRAYAKF--PRNCT 169
AK+SPVATA YRL P+ P+EGE A+EL GV ++++ G+ A+ PR T
Sbjct 223 AKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFSPGVIEVQEVQGKKVARVANPRLDT 282
Query 170 TCRACL--ERFENQLQLNKIPDQFI 192
R E+ + ++L ++ D +I
Sbjct 283 FSREIFRNEKLKKVVRLARVRDHYI 307
> cel:H43I07.2 hypothetical protein; K03027 DNA-directed RNA polymerases
I and III subunit RPAC1
Length=366
Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/227 (37%), Positives = 117/227 (51%), Gaps = 26/227 (11%)
Query 1 EVLAHRLGLIPFKVNPKKLKF--------RNPNQELSEE------NSLKFKMHVKCS--- 43
EVL HRLGL+P +V+P+ +F + EE +L FK++V C+
Sbjct 111 EVLCHRLGLLPLRVDPRGFQFPKEKVVGINEKGVDCDEEPEGDPAKNLIFKINVSCTKNR 170
Query 44 ---PGDLKPHQ--KSMPVYARDLKWIPMSERQKQKFAQDPPAPVHPDILITKLRPGQEIE 98
P P Q + VY+R +W+P+++++ Q + P V DIL+ KLRPGQEIE
Sbjct 171 NAVPTATDPKQLYHNSSVYSRAFEWVPIADQKTQFTEEAHPRMVSDDILVAKLRPGQEIE 230
Query 99 LFGFLEKGLGKTHAKWSPVATAVYRLEPEFVFTSPIEGEEAKELKELCPMGVFDIEDSTG 158
KG+G+ HAK+SPVATA YRL P + I GE A+ LK + GV IE
Sbjct 231 ASCHAVKGIGRDHAKFSPVATASYRLLPTIRLNAEISGEAAERLKSVFSEGVIAIEKKGA 290
Query 159 R--AYAKFPRNCTTCRACL--ERFENQLQLNKIPDQFIFSIESTGSV 201
+ A K R T R E +QL K FIFS+ESTG++
Sbjct 291 KRIAVVKDARKDTCSRNVFRHEDLSKVVQLGKNKQHFIFSVESTGAL 337
> ath:AT2G15430 NRPB3; NRPB3; DNA binding / DNA-directed RNA polymerase/
protein dimerization; K03011 DNA-directed RNA polymerase
II subunit RPB3
Length=319
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 98/216 (45%), Gaps = 19/216 (8%)
Query 1 EVLAHRLGLIPFKV-NPKKLKFRNPNQELSEEN-----SLKFKMHVKCSPGDLKPHQKSM 54
E +AHRLGLIP ++F + S++F++ KC D S
Sbjct 65 EFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVT-DQTLDVTSR 123
Query 55 PVYARDLKWIPMSERQKQKFAQDPPAPVHPDILITKLRPGQEIELFGFLEKGLGKTHAKW 114
+Y+ D P+ + + H I+I KLR GQE++L KG+GK HAKW
Sbjct 124 DLYSADPTVTPVDFTIDSSVSD---SSEHKGIIIVKLRRGQELKLRAIARKGIGKDHAKW 180
Query 115 SPVATAVYRLEPEFVFT----SPIEGEEAKELKELCPMGVFDIEDSTGRAYAKFPRNCTT 170
SP AT + EP+ + + EE +L E P VF ++ T + P T
Sbjct 181 SPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPVTRQVVVVDPEAYTY 240
Query 171 CRACLERFENQ-----LQLNKIPDQFIFSIESTGSV 201
+++ E ++++ D FIF++ESTG+V
Sbjct 241 DEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAV 276
> cpv:cgd1_2710 RNA polymerase II B3 subunit ; K03011 DNA-directed
RNA polymerase II subunit RPB3
Length=355
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 104/239 (43%), Gaps = 44/239 (18%)
Query 1 EVLAHRLGLIPF-KVNPKKLKFRN--PNQELSEENSLKFKMHVKCSPGDLK--PHQKSMP 55
E + HR+GLIP N + F++ QE + S+++ + V C G + H P
Sbjct 65 EFIVHRMGLIPLDSTNIRDFNFKDRCECQERCNKCSVEYLLDVTCEGGATRNVTHYDIQP 124
Query 56 VYARDLKWIPMSERQKQKFAQDPPAPVHPDILITKLRPGQEIELFGFLEKGLGKTHAKWS 115
V L +P+ ++ D ++ ILI KL PGQ I + KG+GK HAKW
Sbjct 125 VATSTLVPMPVPKKD------DSVDGMNNGILIAKLGPGQRIAMRMTACKGIGKFHAKWI 178
Query 116 PVATAVYRLEPE----FVFTSPIEGEEAKELKELCPMGVFDIEDSTGRAYAKFPRN---- 167
PV+ A + E + + +S + ++ KE+ CP VF + ST + +N
Sbjct 179 PVSVATFTNEADVRINYSLSSNLTLKQRKEIVNCCPKDVFALGGSTSKTEYALNKNSAYS 238
Query 168 ------------------CTTCRACLERFENQLQLNKI-------PDQFIFSIESTGSV 201
C C C+ +N +N + PD+F F +ESTG++
Sbjct 239 TKTKTEELPDLEVVSSKSCIFCNECVNLTKNYGYINPVLIRVDTKPDKFHFLVESTGAL 297
> xla:432060 polr2c, MGC81245; polymerase (RNA) II (DNA directed)
polypeptide C, 33kDa; K03011 DNA-directed RNA polymerase
II subunit RPB3
Length=275
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 72/132 (54%), Gaps = 9/132 (6%)
Query 1 EVLAHRLGLIPFKVNP--KKLKFRN--PNQELSEENSLKFKMHVKCSPGDLKPHQKSMPV 56
E +AHR+GLIP + KL++ E E S++F + V+C+ D H S +
Sbjct 62 EFIAHRVGLIPLTSDDIVDKLQYSRDCTCDEFCPECSVEFTLDVRCTE-DQTRHVTSRDL 120
Query 57 YARDLKWIPMSERQKQKFAQDPPAPV-HPDILITKLRPGQEIELFGFLEKGLGKTHAKWS 115
+ +L+ IP++ R + DP V DILI KLR GQE+ L + +KG GK HAKW+
Sbjct 121 VSNNLRVIPVTSRSRD---NDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
Query 116 PVATAVYRLEPE 127
P A + +P+
Sbjct 178 PTAGVAFEYDPD 189
> mmu:20021 Polr2c, 33kDa, MGC118242, RPB3, Rpo2-3, mRBP31; polymerase
(RNA) II (DNA directed) polypeptide C (EC:2.7.7.6);
K03011 DNA-directed RNA polymerase II subunit RPB3
Length=275
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 71/132 (53%), Gaps = 9/132 (6%)
Query 1 EVLAHRLGLIPFKVNP--KKLKFRN--PNQELSEENSLKFKMHVKCSPGDLKPHQKSMPV 56
E +AHRLGLIP + KL++ +E E S++F + V+C+ D H S +
Sbjct 62 EFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNE-DQTRHVTSRDL 120
Query 57 YARDLKWIPMSERQKQKFAQDPPAPV-HPDILITKLRPGQEIELFGFLEKGLGKTHAKWS 115
+ + IP++ R + DP V DILI KLR GQE+ L + +KG GK HAKW+
Sbjct 121 ISNSPRVIPVTSRNRD---NDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
Query 116 PVATAVYRLEPE 127
P A + +P+
Sbjct 178 PTAGVAFEYDPD 189
> hsa:5432 POLR2C, RPB3, RPB31, hRPB33, hsRPB3; polymerase (RNA)
II (DNA directed) polypeptide C, 33kDa (EC:2.7.7.6); K03011
DNA-directed RNA polymerase II subunit RPB3
Length=275
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 71/132 (53%), Gaps = 9/132 (6%)
Query 1 EVLAHRLGLIPFKVNP--KKLKFRN--PNQELSEENSLKFKMHVKCSPGDLKPHQKSMPV 56
E +AHRLGLIP + KL++ +E E S++F + V+C+ D H S +
Sbjct 62 EFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNE-DQTRHVTSRDL 120
Query 57 YARDLKWIPMSERQKQKFAQDPPAPV-HPDILITKLRPGQEIELFGFLEKGLGKTHAKWS 115
+ + IP++ R + DP V DILI KLR GQE+ L + +KG GK HAKW+
Sbjct 121 ISNSPRVIPVTSRNRD---NDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
Query 116 PVATAVYRLEPE 127
P A + +P+
Sbjct 178 PTAGVAFEYDPD 189
> tgo:TGME49_038190 DNA-directed RNA polymerase II, putative (EC:2.7.7.6);
K03011 DNA-directed RNA polymerase II subunit RPB3
Length=484
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 93/225 (41%), Gaps = 29/225 (12%)
Query 1 EVLAHRLGLIPFKVNPKKLKFRNPNQ----ELSEENSLKFKMHVKCSPGDLKPHQKSMPV 56
E ++HRLGL+P + + +F N + + S+++ + V C L + +
Sbjct 206 EYISHRLGLLPID-STRVAEFVNRDDCDCADHCSRCSVQYALDVVCERDSLLVTHRD--I 262
Query 57 YARDLKWIPMSERQKQKFAQDPPAPV--------HPDILITKLRPGQEIELFGFLEKGLG 108
A + + ++ P P+ I I KLR Q + + KG+G
Sbjct 263 VADNARGASLASAGFLDLGCPMPVPLLREMQEKEMDGIPIVKLRKNQSVNMRMTATKGIG 322
Query 109 KTHAKWSPVATAVYRLEPEFVFTSPIEGEEAKELKE----LCPMGVFDIEDSTGRAYAKF 164
K HAKWSPVATA Y+ EPE F + E+K CP VF D T
Sbjct 323 KVHAKWSPVATASYKFEPEIAFEEDLLARAPAEVKRQIAASCPREVFSFIDDTATGGTGV 382
Query 165 PR-----NCTTCRACLER-----FENQLQLNKIPDQFIFSIESTG 199
R NC C C + F +++ +F F++ESTG
Sbjct 383 LRVENKMNCIFCDQCKVKAQELGFRRLVRVEPNERKFHFTVESTG 427
> ath:AT2G15400 NRPE3B; NRPE3B; DNA binding / DNA-directed RNA
polymerase/ protein dimerization
Length=235
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 81/185 (43%), Gaps = 44/185 (23%)
Query 1 EVLAHRLGLIPFKVNPKKLKFR-------NPNQELSEENSLKFKMHVKCSPGDLKPHQKS 53
E +A RL LIP + + + R E E S++F + KC ++
Sbjct 65 EFIAQRLSLIPL-TSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVT------DQT 117
Query 54 MPVYARDLKWIPMSERQKQKFAQDPPA-PV-------------HPDILITKLRPGQEIEL 99
+ V +RDL ++ DP PV H I+I KLR GQE++L
Sbjct 118 LDVTSRDL------------YSADPTVTPVDFTSNSSTSDSSEHKGIIIAKLRRGQELKL 165
Query 100 FGFLEKGLGKTHAKWSPVATAVYRLEPEFVFT----SPIEGEEAKELKELCPMGVFDIED 155
KG+GK HAKWSP AT Y EP+ + + + EE +L E P VF I+
Sbjct 166 KALARKGIGKDHAKWSPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDP 225
Query 156 STGRA 160
TG+
Sbjct 226 VTGQV 230
> dre:334669 polr2c, wu:fk48d01, zgc:56285; polymerase (RNA) II
(DNA directed) polypeptide C (EC:2.7.7.6); K03011 DNA-directed
RNA polymerase II subunit RPB3
Length=275
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 87/180 (48%), Gaps = 14/180 (7%)
Query 1 EVLAHRLGLIPFKVNP--KKLKFRN--PNQELSEENSLKFKMHVKCSPGDLKPHQKSMPV 56
E +AHR+GLIP + K+++ + E S++ + V+C+ D H S +
Sbjct 62 EFVAHRVGLIPLTSDDIVDKMQYSRDCTCDDFCPECSVELTLDVRCTE-DQTRHVTSRDL 120
Query 57 YARDLKWIPMSERQKQKFAQDPPAPV-HPDILITKLRPGQEIELFGFLEKGLGKTHAKWS 115
+ + + IP++ R + DP V DIL+ KLR GQE+ L + +KG GK HAKW+
Sbjct 121 LSNNPRVIPVTSRSRDN---DPNDYVEQDDILLVKLRKGQELRLRAYAKKGFGKEHAKWN 177
Query 116 PVATAVYRLEPEFVF---TSPIEGEEAK-ELKELCPMGVFDIEDSTGRAYAKFPRNCTTC 171
P A + +P+ PI E K E E+ GV D G+ +F N +C
Sbjct 178 PTAGVAFEYDPDNALRHTVYPIPQEWPKSEYSEIEEDGVQAQYDPNGKP-ERFYYNVESC 236
> cel:C36B1.3 rpb-3; RNA Polymerase II (B) subunit family member
(rpb-3); K03011 DNA-directed RNA polymerase II subunit RPB3
Length=282
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 94/208 (45%), Gaps = 29/208 (13%)
Query 1 EVLAHRLGLIPF--KVNPKKLKFRNPNQ--ELSEENSLKFKMHVKCSPGDL--KPHQKSM 54
E +AHR+GLIPF + +K+++ + E +E S+ F + +KC + M
Sbjct 62 EFIAHRMGLIPFISDYHVEKMQYTRDCECAEFCDECSIPFILQMKCKDEATLAVTTEHLM 121
Query 55 PVYARDLKWIPMSERQ-KQKFAQDPPAPVHPDILITKLRPGQEIELFGFLEKGLGKTHAK 113
P++ D P + +++ + +ILI KLR GQE+ L +++KG GK HAK
Sbjct 122 PMHNLDTTVRPACGKALRERGSTRDEFHNREEILIVKLRKGQELNLKAYVKKGFGKEHAK 181
Query 114 WSPVATAVYRLEPEFVFTSPIEGEEAKELKELCPMGVFDIEDSTGRAYAKFPRNCTTCRA 173
W+P + +P+ I ++E+ ++ P + T A
Sbjct 182 WNPTCGVAFEYDPDNALRHTIYP---------------NVEEWPRSDHSSLPEDSTEKEA 226
Query 174 CLERFENQLQLNKIPDQFIFSIESTGSV 201
E + P++F FSIE TG++
Sbjct 227 PFEP-------DNKPNKFWFSIEGTGAL 247
> tpv:TP01_0029 DNA-directed RNA polymerase II; K03011 DNA-directed
RNA polymerase II subunit RPB3
Length=354
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 100/244 (40%), Gaps = 54/244 (22%)
Query 1 EVLAHRLGLIPFKVN-PKKLKFRNPNQ--ELSEENSLKFKMHVKCSPGDLK--------- 48
E ++HRLGL+P + +FR+ Q + + ++ + + V C D +
Sbjct 65 EYISHRLGLLPIDSTLASEFEFRDRCQCTDKCAKCTVDYTLDVSCKDSDSRVVTHFDIVP 124
Query 49 --PHQKSMPVYARDLKW-IPMSERQKQKFAQDPPAPVHPDILITKLRPGQEIELFGFLEK 105
H KS +Y ++L IP ++ A D I I KL+ G I + K
Sbjct 125 DDTHSKS--IYGKNLPMPIPRADVTNFNGATD-------GIPIVKLKRGHSINMKLTASK 175
Query 106 GLGKTHAKWSPVATAVYRLEPEFVFTSP----IEGEEAKELKELCPMGVFDIE------- 154
GLGK HAKW VA Y++EP F F S + EE + CP VF
Sbjct 176 GLGKFHAKW-IVANVNYKMEPRFSFNSSLMEQLSSEEKAGIAASCPRNVFKYTGVRSEAP 234
Query 155 ------------DSTGRAYAKFPRNCTTCRACLE--RFENQLQLNKI-PDQ--FIFSIES 197
D+ G + C C C+ R L +I PD+ F F+IES
Sbjct 235 SFLGPSDKTFKLDAAG-LHVVDKLACIYCDECINYCRELGHKDLIRIQPDESKFHFTIES 293
Query 198 TGSV 201
TG++
Sbjct 294 TGAI 297
> bbo:BBOV_I002600 19.m02023; DNA-directed RNA polymerase II (EC:2.7.7.6);
K03011 DNA-directed RNA polymerase II subunit RPB3
Length=382
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 106/265 (40%), Gaps = 67/265 (25%)
Query 1 EVLAHRLGLIPFKVN-PKKLKFRN--PNQELSEENSLKFKMHVKCSPG---------DLK 48
E +AHRLGL+P + + + ++R+ + ++++ + VKC +L
Sbjct 65 EYIAHRLGLLPIESSSARNFEYRDKCTCSDKCSRCTVEYSLDVKCMDDTRVVTHYDINLD 124
Query 49 PHQKS-------MPV--------------YARDLKWIPMSERQKQKFAQDPPAPVHPDIL 87
+ S MPV D + + S + Q+P P H +
Sbjct 125 SWENSRGNVNAPMPVPRPSADALGNAPGDQGSDPQRVNSSGNATARNVQNPDGP-HTGAV 183
Query 88 -------------ITKLRPGQEIELFGFLEKGLGKTHAKWSPVATAVYRLEPEFVFTSPI 134
I KL+ GQ + L KGLGK HAKW VA Y++EP +
Sbjct 184 DRKSGSVPTGGIPIVKLKRGQCLSLKMTATKGLGKFHAKWM-VANVAYKMEPVITINRQV 242
Query 135 EGE----EAKELKELCPMGVFDIEDSTGRAYAKFPR---------NCTTCRACLER---- 177
+ E ++ + CP VF + + G AY+ + NC C CL +
Sbjct 243 AEKMNLNEKTQIVQSCPRKVFKLSNPHG-AYSTATKAEIVIDNNLNCIYCDECLNQAREM 301
Query 178 -FENQLQLNKIPDQFIFSIESTGSV 201
+ + +++ +F F+IES G++
Sbjct 302 GYRDLIRVQPDETKFHFTIESNGAI 326
> sce:YIL021W RPB3; B44; K03011 DNA-directed RNA polymerase II
subunit RPB3
Length=318
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 10/129 (7%)
Query 1 EVLAHRLGLIPFK-VNPKKLKFRNPNQELSEENSLKFKMHVKCSPGDLKPHQKSMPVYAR 59
E +AHRLGLIP + ++ ++L++ E++ K + + + + VY++
Sbjct 61 EFIAHRLGLIPLQSMDIEQLEYSRDC--FCEDHCDKCSVVLTLQA--FGESESTTNVYSK 116
Query 60 DLKWIP--MSERQKQKFAQDPPAPVHPDILITKLRPGQEIELFGFLEKGLGKTHAKWSPV 117
DL + M QD +LI KLR GQE++L +KG+ K HAKW P
Sbjct 117 DLVIVSNLMGRNIGHPIIQDKEGN---GVLICKLRKGQELKLTCVAKKGIAKEHAKWGPA 173
Query 118 ATAVYRLEP 126
A + +P
Sbjct 174 AAIEFEYDP 182
> pfa:PFI1130c DNA-directed RNA polymerase II, putative (EC:2.7.7.6);
K03011 DNA-directed RNA polymerase II subunit RPB3
Length=335
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 69/156 (44%), Gaps = 25/156 (16%)
Query 1 EVLAHRLGLIPF---KVNPKKLKFRNPNQELSEENSLKFKMHVKCSPGDLKPHQKSMPVY 57
E +AHRLGLIP VN + + + +E + ++++ + VKC+ H + V
Sbjct 66 EFIAHRLGLIPIDSRNVNNYEFREKCKCKETCSKCTIQYIIEVKCN------HSNKIDVS 119
Query 58 ARDLKWI--------PMSERQKQKFAQDPPAPVHPDILITKLRPGQEIELFGFLEKGLGK 109
D++ + P+ K +++ I I L Q + + KG+GK
Sbjct 120 HYDIESLEHEPNVPMPIPHGNKNSVSENA-------IPIVTLSKNQTLHMKLIATKGIGK 172
Query 110 THAKWSPVATAVYRLEPEFVFTSPIEGEEAKELKEL 145
HAKW P A YR++ + + + + + E K L
Sbjct 173 MHAKWIP-ANVSYRIDHKVLIKHNLIDKLSNEHKLL 207
> ath:AT3G14810 MSL5; MSL5 (MECHANOSENSITIVE CHANNEL OF SMALL
CONDUCTANCE-LIKE 5)
Length=881
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query 65 PMSERQKQKF-AQDPPAPVHPDILITKLRPGQEIELF--GFLEK 105
PM R K K QDPP P HP I T+++ G+ +F GFL K
Sbjct 187 PMLSRNKTKSRLQDPPTPTHPAIDKTEMKSGRRSGIFKSGFLGK 230
> xla:100158303 hypothetical protein LOC100158303
Length=211
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 0/41 (0%)
Query 117 VATAVYRLEPEFVFTSPIEGEEAKELKELCPMGVFDIEDST 157
V TA+ RLE + S + G EAK L P+G F I DS+
Sbjct 43 VETALERLEASGYYWSTLSGTEAKNLLSDQPVGSFLIRDSS 83
> xla:398305 rnf103-a, kf1, rnf103, x-kf-1a, zfp103; ring finger
protein 103
Length=678
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query 161 YAKFPRN---CTTCRACLERFENQLQLNKIPDQFIF 193
+A +P N CT C CLE FEN+ L +P +F
Sbjct 602 WATWPGNMLHCTECVVCLENFENRSLLMGLPCGHVF 637
> xla:414533 socs3, MGC81248, atod4, cis3, cish3, socs-3, ssi-3,
ssi3, xsocs3; suppressor of cytokine signaling 3
Length=199
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 0/52 (0%)
Query 110 THAKWSPVATAVYRLEPEFVFTSPIEGEEAKELKELCPMGVFDIEDSTGRAY 161
+ ++++ V TAV +L+ + S + G +A L P G F I DS+ R +
Sbjct 25 SRSEYNLVLTAVRKLQESGFYWSTLTGSQANLLLSTEPAGTFLIRDSSDRRH 76
> xla:380467 socs3, MGC64393; suppressor of cytokine signaling
3; K04696 suppressor of cytokine signaling 3
Length=199
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 0/50 (0%)
Query 112 AKWSPVATAVYRLEPEFVFTSPIEGEEAKELKELCPMGVFDIEDSTGRAY 161
++++ V TAV +L+ + S + G +A L P G F I DS+ R +
Sbjct 27 SEYNLVLTAVRKLQESGFYWSTVTGSQANLLLSTEPAGTFLIRDSSDRRH 76
> mmu:18415 Hspa4l, 94kDa, AI461691, APG-1, MGC117843, Osp94;
heat shock protein 4 like; K09485 heat shock protein 110kDa
Length=838
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 13/88 (14%)
Query 108 GKTHAKWSPVATAVYRLEPEFVFTSPIEGE-----------EAKELKELCPMGVFDIEDS 156
GK + P+ +++YR + + S IE E E + K V+D D
Sbjct 575 GKIKSIDLPIQSSLYRQLTQDLLNSYIENEGKMIMQDKLEKERNDAKNAVEEYVYDFRDK 634
Query 157 TGRAYAKF--PRNCTTCRACLERFENQL 182
G Y KF P + A LE EN L
Sbjct 635 LGTVYEKFITPEDMNKLSAMLEDTENWL 662
> dre:556874 col6a3, wu:fb06e12, wu:fs74g09; collagen, type VI,
alpha 3
Length=12640
Score = 30.0 bits (66), Expect = 5.5, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query 93 PGQEIELFGFLEKGLGKTHAKWSPVATAVYRLEPEFVFTSPIEGE 137
P ++++ FG L +G +A S + T + P F+F P+ GE
Sbjct 945 PAEDLKNFGVLSIAIGIKNALESELQTIAF--SPRFIFNLPVSGE 987
> xla:446526 snx6, MGC80251; sorting nexin 6
Length=406
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query 28 LSEENSLKFKMHVKCSPGDLKPHQKSMPVYARDLKWIPMSERQKQKFAQD--PPAPVHPD 85
LSE + +KF +H K S + K ++ S+ + W+ S + +++A PPAP PD
Sbjct 40 LSERDKVKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENEEYAGYIIPPAPPRPD 99
Query 86 I 86
Sbjct 100 F 100
> xla:432136 enosf1, MGC80074; enolase superfamily member 1
Length=445
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query 19 LKFRNPNQELSEENSLKFKMHVKCSPGDLKPHQ--KSMPVYARDLKWIPMSERQKQKFAQ 76
+ FR L+EE +LK + K D + H P Y W+ S+ Q +K
Sbjct 150 IDFRYITDALTEEEALKILQNGKQGQRDREEHMLTSGYPAYTTSCAWLGYSDEQLKKLCS 209
Query 77 D 77
D
Sbjct 210 D 210
> xla:496311 hypothetical LOC496311
Length=400
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query 28 LSEENSLKFKMHVKCSPGDLKPHQKSMPVYARDLKWIPMSERQKQKFAQ--DPPAPVHPD 85
LSE + +KF +H K + K + + + D W+ S + + +A PPAP PD
Sbjct 35 LSERDKVKFTVHTKTKLPNFKNPEFDVARFHEDFIWLHDSLIETEDYAGLIIPPAPAKPD 94
Lambda K H
0.319 0.137 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 6060209704
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
Posted date: Sep 17, 2011 2:57 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40