bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
164,496 sequences; 82,071,388 total letters
Query= Eten_1001_orf3
Length=654
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_025260 DNA-directed RNA polymerase II largest subun... 1001 0.0
bbo:BBOV_I003360 19.m02399; DNA-directed RNA polymerase II lar... 806 0.0
cpv:cgd3_2620 DNA-directed RNA polymerase,possible RNA polymer... 710 0.0
tpv:TP03_0185 DNA-directed RNA polymerase II largest subunit (... 702 0.0
mmu:20020 Polr2a, 220kDa, Rpb1, Rpo2-1; polymerase (RNA) II (D... 548 4e-155
ath:AT4G35800 NRPB1; NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); ... 545 2e-154
dre:553347 polr2a, im:7136071; polymerase (RNA) II (DNA direct... 544 4e-154
hsa:5430 POLR2A, MGC75453, POLR2, POLRA, RPB1, RPBh1, RPO2, RP... 541 3e-153
cel:F36A4.7 ama-1; AMAnitin resistant family member (ama-1); K... 518 2e-146
sce:YDL140C RPO21, RPB1, RPB220, SUA8; B220 (EC:2.7.7.6); K030... 450 7e-126
pfa:PFC0805w DNA-directed RNA polymerase II, putative; K03006 ... 342 2e-93
cel:C42D4.8 rpc-1; RNA Polymerase, Class III (C) family member... 192 5e-48
tgo:TGME49_106290 DNA-directed RNA polymerase III largest subu... 188 7e-47
sce:YOR116C RPO31, RPC1, RPC160; C160 (EC:2.7.7.6); K03018 DNA... 183 2e-45
bbo:BBOV_III007400 17.m07648; RNA polymerase Rpb1, domain cont... 183 2e-45
tpv:TP04_0648 DNA-directed RNA polymerase III largest subunit ... 179 4e-44
ath:AT5G60040 NRPC1; NRPC1; DNA binding / DNA-directed RNA pol... 173 2e-42
mmu:218832 Polr3a, 9330175N20Rik, BC053071, MGC62420, RPC1, RP... 171 7e-42
hsa:11128 POLR3A, RPC1, RPC155, hRPC155; polymerase (RNA) III ... 171 8e-42
cpv:cgd6_3290 DNA-directed RNA polymerase III C1 subunit ; K03... 169 3e-41
pfa:PF13_0150 DNA-directed RNA polymerase 3 largest subunit (E... 97.1 2e-19
ath:AT3G57660 NRPA1; NRPA1; DNA binding / DNA-directed RNA pol... 95.9 4e-19
hsa:25885 POLR1A, A190, DKFZp586M0122, FLJ21915, MGC87965, RPA... 94.0 2e-18
dre:100334143 polymerase (RNA) III (DNA directed) polypeptide ... 93.6 3e-18
mmu:20019 Polr1a, 194kDa, 3010014K16Rik, RPA194, Rpo1-4, mRPA1... 93.6 3e-18
cel:Y48E1A.1 hypothetical protein; K02999 DNA-directed RNA pol... 92.8 3e-18
xla:398274 polr1a; polymerase (RNA) I polypeptide A, 194kDa; K... 92.8 4e-18
sce:YOR341W RPA190, RRN1; A190 (EC:2.7.7.6); K02999 DNA-direct... 92.0 6e-18
dre:327078 polr1a, cb934, fa26a03, sb:cb935, wu:fa26a03; polym... 90.9 1e-17
bbo:BBOV_IV009600 23.m06317; DNA directed RNA polymerase (EC:2... 89.7 3e-17
cpv:cgd5_730 DNA-directed RNA polymerase I ; K02999 DNA-direct... 89.7 3e-17
tgo:TGME49_044880 DNA-directed RNA polymerase I largest subuni... 89.0 5e-17
tpv:TP01_0809 RNA polymerase large subunit; K02999 DNA-directe... 85.5 6e-16
pfa:PFE0465c RNA polymerase I; K02999 DNA-directed RNA polymer... 79.0 6e-14
eco:b3988 rpoC, ECK3979, JW3951, tabB; RNA polymerase, beta pr... 55.5 7e-07
ath:ArthCp012 rpoC2; RNA polymerase beta'' chain; K03046 DNA-d... 50.8 2e-05
ath:AT1G63020 NRPD1A; NRPD1A (NUCLEAR RNA POLYMERASE D 1A); DN... 48.5 8e-05
bbo:BBOV_V000110 rpoC2-N-terminal; K03046 DNA-directed RNA pol... 44.7 0.001
tgo:TGME49_100690 RNA polymerase Rpb1, domain 5 family protein... 40.8 0.016
tpv:TP05_0042 DNA-directed RNA polymerase subunit beta'' (EC:2... 40.8 0.019
dre:260407 tp63, DNp63, MGC192897, id:ibd3516, p63, tp73l, wu:... 35.0 0.98
cel:Y54E10A.9 vbh-1; Vasa- and Belle-like Helicase family memb... 34.7 1.4
xla:397920 numa; nuclear/mitotic apparatus protein 33.5 2.6
cpv:cgd6_3640 protein disulfide isomerase ; secreted protein w... 33.1 3.5
> tgo:TGME49_025260 DNA-directed RNA polymerase II largest subunit,
putative (EC:2.7.7.6 3.5.1.16); K03006 DNA-directed RNA
polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1892
Score = 1001 bits (2589), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/661 (75%), Positives = 553/661 (83%), Gaps = 26/661 (3%)
Query 6 ELMQMDSEKIRRVYKHHFDQESYGKGWILDEELRTRLSVDFAAQQVLEDEFETIKEDKLR 65
ELM +D+EK++R+Y+H DQESYGKGW+ DE LR + D+ QQ LE+EFE I+EDK R
Sbjct 910 ELMTLDNEKLKRLYRHDVDQESYGKGWLSDE-LRNEILTDYELQQPLEEEFEAIREDKNR 968
Query 66 LCKTIFPDGEVKQHIPINIMRLVEFAKAQFPASVEQLRKQDPVAIAKSVQELLNEKLVVV 125
LC+ IF DGE KQHIPINI+RL+EFAKAQFP S + RKQ P+ IA+ V ELLNEKLVVV
Sbjct 969 LCRHIFKDGETKQHIPINILRLLEFAKAQFP-SGDSSRKQSPIEIARKVNELLNEKLVVV 1027
Query 126 KQTCKADTISAEVQENATIFMKAHLRTVLNSRRLLEREQLGAKAVHWLLGEVERQFHRSL 185
KQT AD ISAEVQENATIFMKAHLRTVLNSRRLLERE +G KA+ WLLGEVER FHR+L
Sbjct 1028 KQTTNADAISAEVQENATIFMKAHLRTVLNSRRLLERECIGPKALQWLLGEVERHFHRAL 1087
Query 186 AHAGECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINVAKTVKTPSLT 245
AHAGECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINVAK VKTPSLT
Sbjct 1088 AHAGECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINVAKQVKTPSLT 1147
Query 246 VYLLDEGAYDQERAKDVQTHLEHTTLEKVCTMAQVIYDPDPTKTIVPQDKQWVSDYYEFP 305
VYL DE A DQERAKDVQTHLEHTTL++V ++QVIYDPDPT TI+PQD+QWV DYYEFP
Sbjct 1148 VYLQDEIAMDQERAKDVQTHLEHTTLDRVTVVSQVIYDPDPTDTIIPQDRQWVRDYYEFP 1207
Query 306 DDEELPQSLGRWLLRVQLDSKVMIDKKLPMKEIGETIYREFDNDELDCIWTDDNSDELVL 365
DD+ELP +LGRWLLR+Q+ SKVMIDKKL MKEIGE IY EF N+ELDCIWTDDNSD+LVL
Sbjct 1208 DDDELPSNLGRWLLRIQMASKVMIDKKLTMKEIGEKIYAEFPNEELDCIWTDDNSDDLVL 1267
Query 366 RIRIKKH--GQEQDPNSDDQSSEIENRFLQKLMLHCLVGITLRGVSRITKVYMREEARTL 423
RIR+K+ E + +D +E +RFLQKLM+ CL GITLRG++ I+KVYMREEART+
Sbjct 1268 RIRLKQQPGEGEDEDKDEDDVAEAGDRFLQKLMVQCLAGITLRGITNISKVYMREEARTI 1327
Query 424 YNETTGKFERVNNWVLDTDGCNLDEVLTCPRVDSTRTTSNDITEIFDVLGIEAVRRALLR 483
YN GKFER NNWVLDTDGCNL++VL P VD TRTTSND+TEIF VLGIEAVRRALLR
Sbjct 1328 YNNQLGKFERTNNWVLDTDGCNLEDVLPIPMVDDTRTTSNDMTEIFHVLGIEAVRRALLR 1387
Query 484 ELRAVISFDGSYVNYRHLAILCDTMTQKGYLMSITRHGINRVEKGPLKKCSFEETVEILM 543
ELRAVISFDGSYVNYRHLAILCDTMTQKGYLMSITRHGINR++KGPL KCSFEETVEILM
Sbjct 1388 ELRAVISFDGSYVNYRHLAILCDTMTQKGYLMSITRHGINRIDKGPLMKCSFEETVEILM 1447
Query 544 EAAVFAETDHLRGVTENIMLGQLCPLGTGDVDLLIDEEKLKDAHRAVEPQQDLALEGLAS 603
EAAVFAE DHLRGVTENIM+GQLCPLGTG D+LIDEEKLKDA L+GL
Sbjct 1448 EAAVFAEADHLRGVTENIMMGQLCPLGTGYFDVLIDEEKLKDASH--------NLDGLGG 1499
Query 604 PGGADG-------------MSPDGSGTPSPHNVTSVFSPMPFSTVYSSFAQSPSNPLSPT 650
G DG ++PDGS TPSPH + SVFSPMPFSTVYSSFA SP+NPLSPT
Sbjct 1500 AGEFDGGVGTSPTSSDPLVITPDGSFTPSPH-LNSVFSPMPFSTVYSSFAASPANPLSPT 1558
Query 651 S 651
+
Sbjct 1559 T 1559
> bbo:BBOV_I003360 19.m02399; DNA-directed RNA polymerase II largest
subunit (EC:2.7.7.6); K03006 DNA-directed RNA polymerase
II subunit RPB1 [EC:2.7.7.6]
Length=1746
Score = 806 bits (2081), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/652 (60%), Positives = 498/652 (76%), Gaps = 16/652 (2%)
Query 6 ELMQMDSEKIRRVYKHHFDQESYGKGWILDEELRTRLSVDFAAQQVLEDEFETIKEDKLR 65
+LM++D + R+Y H F E+YG GWILDE +RT + DF+ Q +L +E++ I + K
Sbjct 897 DLMKLDFASLNRLYAHDFRNENYGVGWILDESVRTNILTDFSKQVILVEEYQRILDMKAI 956
Query 66 LCKTIFPDGEVKQHIPINIMRLVEFAKAQFPASVEQLRKQDPVAIAKSVQELLNEKLVVV 125
LCK +FPDGE +QH+PINI RL+E+AK QFP + E + +PV IA+ VQ+LL + L +V
Sbjct 957 LCKQVFPDGEARQHLPINISRLLEYAKTQFPTTTESRKLMNPVDIAQRVQQLL-DSLTIV 1015
Query 126 KQTCKADTISAEVQENATIFMKAHLRTVLNSRRLLEREQLGAKAVHWLLGEVERQFHRSL 185
+ D ++AE QENATI +KAHL T LNSRRL+ERE++G A WLLGEV+R F++S+
Sbjct 1016 VTSGPHDILAAEAQENATILIKAHLSTALNSRRLMEREKIGNLAFDWLLGEVKRIFYKSI 1075
Query 186 AHAGECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINVAKTVKTPSLT 245
H GECVGAIAAQSIGEPATQMTLNTFHFAGV SKNVTLG+PRLKELINV + VKTPSLT
Sbjct 1076 CHPGECVGAIAAQSIGEPATQMTLNTFHFAGVSSKNVTLGLPRLKELINVVRNVKTPSLT 1135
Query 246 VYLLDEGAYDQERAKDVQTHLEHTTLEKVCTMAQVIYDPDPTKTIVPQDKQWVSDYYEFP 305
++L A+DQERAKD+QT LE+TTL+KV ++QVIYDP+ ++TIVP+D WV +YYEFP
Sbjct 1136 IHLDRGVAHDQERAKDMQTRLEYTTLDKVVALSQVIYDPNVSQTIVPKDYAWVREYYEFP 1195
Query 306 DDEELPQSLGRWLLRVQLDSKVMIDKKLPMKEIGETIYREFDNDELDCIWTDDNSDELVL 365
D++ LG W+LR+QL +KVM DK+L MKEI + IY+EF NDE+DCI TDDN+DELVL
Sbjct 1196 DEDM--NRLGPWVLRIQLSNKVMTDKRLTMKEIVDRIYQEFSNDEIDCIHTDDNNDELVL 1253
Query 366 RIRIKKHGQEQDPNSDDQSSEIENRFLQKLMLHCLVGITLRGVSRITKVYMREEARTLYN 425
RIR+K + D E E FLQ+ M LV + LRGVS+ITKVYMREEART YN
Sbjct 1254 RIRVKYSNMDVD---QQNMGENEGEFLQRFMSQVLVNVKLRGVSKITKVYMREEARTKYN 1310
Query 426 ETTGKFERVNNWVLDTDGCNLDEVLTCPRVDSTRTTSNDITEIFDVLGIEAVRRALLREL 485
ET G+FERV+ WVLDTDGCNL++VL+ P VD+ ++ SNDI+EIF VLGIEA R ALLREL
Sbjct 1311 ETNGRFERVSQWVLDTDGCNLEDVLSIPCVDAQKSISNDISEIFHVLGIEAARMALLREL 1370
Query 486 RAVISFDGSYVNYRHLAILCDTMTQKGYLMSITRHGINRVEKGPLKKCSFEETVEILMEA 545
RAVISFDGSYVNYRHL++LCD MTQKG++MSITRHG+NR ++GPL KCSFEET+E L++A
Sbjct 1371 RAVISFDGSYVNYRHLSLLCDVMTQKGHIMSITRHGLNRADRGPLVKCSFEETLEALVDA 1430
Query 546 AVFAETDHLRGVTENIMLGQLCPLGTGDVDLLIDEEKLKDAHRAVEPQQDLALEGLASPG 605
AVFAE D L+GVTEN+MLGQLCP+GTG D++ID+EKL+DA++ ++ D AL G SP
Sbjct 1431 AVFAELDLLKGVTENVMLGQLCPMGTGSFDIMIDDEKLRDANQNLQIMPDSALSGFTSP- 1489
Query 606 GADGMSPDGSGTPSPHNVTSVFSPMPFSTVYSSFAQSP----SNPLSPTSPS 653
+ SPD SP + S+ SP+PFS Y++ SP S+P TSP+
Sbjct 1490 --ESTSPDSM---SPAKINSMLSPLPFSPSYAALMMSPIVNVSSPSFVTSPA 1536
> cpv:cgd3_2620 DNA-directed RNA polymerase,possible RNA polymerase
A/beta'/A'' subunit, long PHYSPTS repeat ; K03006 DNA-directed
RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1902
Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/691 (53%), Positives = 470/691 (68%), Gaps = 42/691 (6%)
Query 6 ELMQMDSEKIRRVYKHHFDQESYGKGWI-LDEELRTRLSVDFAAQQVLEDEFETIKEDKL 64
EL+QM++ + Y+H+ + +G W + L L D +Q +L E++ + D+
Sbjct 919 ELLQMEAAVFQHKYRHNLEHPRWGSSWAGVQPSLIKNLQFDLESQNILNSEYKQLVTDRE 978
Query 65 RLCKTIFPDGEVKQHIPINIMRLVEFAKAQFPASVEQL---RKQDPVAIAKSVQELLNEK 121
+L K IFPDGE +QH+PINI R+++ A+ +FP V + PV I K V+ LL++
Sbjct 979 QLGKDIFPDGETRQHLPININRIIQMAQQKFPQRVSDTSSSKDWGPVYIIKKVESLLDKL 1038
Query 122 L------VVVKQTCKA----DTISAEVQENATIFMKAHLRTVLNSRRLLEREQLGAKAVH 171
L ++ + K+ D+I AEVQ+NAT + H+R+ L S+++LE ++LG A
Sbjct 1039 LLWKNVGIINDEGNKSNFVFDSIIAEVQKNATTLLGIHIRSSLASKKILEVDRLGPTAFE 1098
Query 172 WLLGEVERQFHRSLAHAGECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKE 231
W+LGE+E QF+RSLAH+GE VG IAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRL+E
Sbjct 1099 WILGEIEHQFYRSLAHSGEMVGTIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLRE 1158
Query 232 LINVAKTVKTPSLTVYLLDEGAYDQERAKDVQTHLEHTTLEKVCTMAQVIYDPDPTKTIV 291
LINVAK V+TP+LTVYL A DQE+AKDV T LEHT L+ + T+A ++YDP+ KTIV
Sbjct 1159 LINVAKNVRTPTLTVYLESGIANDQEQAKDVLTLLEHTMLQNITTIAHILYDPEQDKTIV 1218
Query 292 PQDKQWVSDYYEFPDDEELPQSLGRWLLRVQLDSKVMIDKKLPMKEIGETIYREFDNDEL 351
DK WVSDYYEFPDD ++ LG WLLR+QL++K++ DKKL MKEIG+ I EF DEL
Sbjct 1219 EADKSWVSDYYEFPDDADITSRLGTWLLRIQLNNKLVTDKKLSMKEIGDKILMEFSKDEL 1278
Query 352 DCIWTDDNSDELVLRIRIKK------------HGQEQDPNSDDQSSEI-ENRFLQKLMLH 398
DCIWTDDNSDELVLR+RIK +E D S +S + E++FL+KLM
Sbjct 1279 DCIWTDDNSDELVLRLRIKNIEPTNNIRDNIHSSEENDSISPSITSGVEEHKFLEKLMTE 1338
Query 399 CLVGITLRGVSRITKVYMREEARTLYNETTGKFERVNNWVLDTDGCNLDEVLTCPRVDST 458
CL ITLRG++ I KVYM+EE + Y+ + K R N WVLDTDGCNL+ VL +DST
Sbjct 1339 CLSQITLRGINNIKKVYMKEEQVSRYDSVSQKMVRDNQWVLDTDGCNLEAVLCHTAIDST 1398
Query 459 RTTSNDITEIFDVLGIEAVRRALLRELRAVISFDGSYVNYRHLAILCDTMTQKGYLMSIT 518
RT SNDITE+F VLGIEAVRRALLRELR VISFDGSYVNYRHLA+LCD MTQKG+LMSIT
Sbjct 1399 RTISNDITEVFSVLGIEAVRRALLRELRTVISFDGSYVNYRHLALLCDNMTQKGHLMSIT 1458
Query 519 RHGINRVEKGPLKKCSFEETVEILMEAAVFAETDHLRGVTENIMLGQLCPLGTGDVDLLI 578
RHGINRV+KGPL+KCSFEETVE+LM+AA+F ETD+L GV+EN+MLGQL P GT D+LI
Sbjct 1459 RHGINRVDKGPLQKCSFEETVEVLMDAAMFGETDYLNGVSENVMLGQLAPYGTACFDVLI 1518
Query 579 DEEKLKDAHRAVEPQQDLALEGLASPGGADGMSPDGSGTPSPHNVTSVFSPM-PFSTVYS 637
D +KL+D +E + A G S S SG + S SP+ P S +Y
Sbjct 1519 DPDKLRDTATHLEIHGEFAKLGKFSTLSQTTRSYSDSGAFESDSFESPMSPLSPMSPLYQ 1578
Query 638 SF--------------AQSPSNPLSPTSPSA 654
S+ +P +P+SP SP
Sbjct 1579 SYEPMSPMISGQFSPVQMTPRSPMSPVSPGG 1609
> tpv:TP03_0185 DNA-directed RNA polymerase II largest subunit
(EC:2.7.7.6); K03006 DNA-directed RNA polymerase II subunit
RPB1 [EC:2.7.7.6]
Length=1681
Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/705 (52%), Positives = 473/705 (67%), Gaps = 68/705 (9%)
Query 6 ELMQMDSEKIRRVYKHHFDQESYGKGWILDEELRTRLSVDFAAQQVLEDEFETIKEDKLR 65
+LM++D E+I R + H F ESYG GWI EE+R + DF+ Q +L +EF+ + + K
Sbjct 897 DLMRLDDEEIHRRFSHDFRSESYGLGWI-SEEIRNAILSDFSQQVILVEEFQKLLDLKKM 955
Query 66 LCKTIFPDGEVKQHIPINIMRLVEFAKAQFPASVEQLRKQDPVAIAKSVQELLNEKLVVV 125
+C+ IFP G+ QH+PINI R++E+A QFPAS K +PV IA+ +LL E L+++
Sbjct 956 ICEEIFPSGDYSQHLPINIKRILEYATTQFPAS--STSKLNPVEIAQRTNKLL-ESLIII 1012
Query 126 KQTCKADTISAEVQENATIFMKAHLRTVLNSRRLLEREQLGAKAVHWLLGEVERQFHRSL 185
+ D +S E Q+NATI +KAHLR LNSR L+E+ Q+ + A+ W+ GEVER F +++
Sbjct 1013 NTSGPNDILSEEAQQNATILIKAHLRCHLNSRYLMEQVQISSLALDWVYGEVERCFFKAI 1072
Query 186 AHAGECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINVAKTVKTPSLT 245
A+ GECVGAIAAQSIGEPATQMTLNTFHFAGV SKNVTLG+PRLKELINV V+TPSLT
Sbjct 1073 ANPGECVGAIAAQSIGEPATQMTLNTFHFAGVSSKNVTLGLPRLKELINVVTNVRTPSLT 1132
Query 246 VYLLDEGAYDQERAKDVQTHLEHTTLEKVCTMAQVIYDPDPTKTIVPQDKQWVSDYYEFP 305
+YL DQERAK++QT LE+T EK+ V+YDP +TI+ +D +WV DYYEFP
Sbjct 1133 IYLDPSINKDQERAKEMQTLLEYTNFEKIVLSYTVVYDPVVDRTIIEEDYEWVRDYYEFP 1192
Query 306 DDEELPQSLGRWLLRVQLDSKVMIDKKLPMKEIGETIYREFDNDELDCIWTDDNSDELVL 365
D+E +LG+++LR+ L+SK+M DK+L MKE+GE IY EF N E+D I+TDDNS+ LV+
Sbjct 1193 DEEM--GTLGQFVLRIVLNSKIMTDKRLTMKEVGEIIYSEFSNGEIDAIYTDDNSELLVM 1250
Query 366 RIRIKKHGQEQDPNSDDQSSEIENRFLQKLMLHCLVGITLRGVSRITKVYMREEARTLYN 425
RIR+K +G E D + S+ E FL K M L GI LRGV ITKVYMREE YN
Sbjct 1251 RIRVK-YGGEGD---NSGPSDTEADFLNKFMTDVLCGIKLRGVKGITKVYMREENCVRYN 1306
Query 426 ETTGKFERVNNWVLDTDGCNLDEVLTCPRVDSTRTTSNDITEIFDVLGIEAVRRALLREL 485
G F+RV+ WVLDTDGCNL+ VL VD T+T SND++EIF V GIEA RRALLRE+
Sbjct 1307 SAVGSFDRVSQWVLDTDGCNLESVLPITCVDYTKTFSNDVSEIFHVFGIEAARRALLREI 1366
Query 486 RAVISFDGSYVNYRHLAILCDTMTQKGYLMSITRHGINRVEKGPLKKCSFEETVEILMEA 545
RAVISFDG+YVNYRHL++LCD MTQKGYLMSITRHGINR ++GPL KCSFEET+E L+ A
Sbjct 1367 RAVISFDGAYVNYRHLSLLCDIMTQKGYLMSITRHGINRADRGPLIKCSFEETLETLLTA 1426
Query 546 AVFAETDHLRGVTENIMLGQLCPLGTGDVDLLIDEEKLKDAHR--AVEPQQDLAL----- 598
AVF E DHL+GVTEN+++GQL P GTG D++IDE KL+DA++ A+ L L
Sbjct 1427 AVFGEVDHLKGVTENVIVGQLSPYGTGAFDIMIDEVKLRDANQTNAINVADTLGLVSPDS 1486
Query 599 ------------------------EGLASPGGADGMSPD------------GSGTP---- 618
+ SP G GM P GS +P
Sbjct 1487 SPLSPSTPATKQTMSPMAFSPTYTSLMMSPVGGIGMGPSTPGLMVDTYALGGSFSPTSPT 1546
Query 619 ------SPHNVTSVFSPM----PFSTVYSSFAQSPSNPLSPTSPS 653
SP + TS SPM S VYS A SP++P+SPTSP+
Sbjct 1547 SPMSPTSPMSPTSPMSPMSPTSAMSPVYSP-AYSPTSPMSPTSPA 1590
> mmu:20020 Polr2a, 220kDa, Rpb1, Rpo2-1; polymerase (RNA) II
(DNA directed) polypeptide A (EC:2.7.7.6); K03006 DNA-directed
RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1932
Score = 548 bits (1411), Expect = 4e-155, Method: Compositional matrix adjust.
Identities = 298/606 (49%), Positives = 403/606 (66%), Gaps = 28/606 (4%)
Query 34 LDEELRTRLSVDFAAQQVLEDEFETIKEDKLRLCKTIFPDGEVKQHIPINIMRLVEFAKA 93
L E+L + + Q LE EFE ++ED+ + + IFP G+ K +P N++R++ A+
Sbjct 934 LQEDLVKDVLSNAHIQNELEREFERMREDR-EVLRVIFPTGDSKVVLPCNLLRMIWNAQK 992
Query 94 QFPASVEQLRKQDPVAIAKSVQELLNEKLVVVKQTCKADTISAEVQENATIFMKAHLRTV 153
F + P+ + + V+EL ++KLV+V D +S + QENAT+ HLR+
Sbjct 993 IFHINPRLPSDLHPIKVVEGVKEL-SKKLVIVNGD---DPLSRQAQENATLLFNIHLRST 1048
Query 154 LNSRRLLEREQLGAKAVHWLLGEVERQFHRSLAHAGECVGAIAAQSIGEPATQMTLNTFH 213
L SRR+ E +L +A WLLGE+E +F++++AH GE VGA+AAQS+GEPATQMTLNTFH
Sbjct 1049 LCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFH 1108
Query 214 FAGVGSKNVTLGVPRLKELINVAKTVKTPSLTVYLLDEGAYDQERAKDVQTHLEHTTLEK 273
+AGV +KNVTLGVPRLKELIN++K KTPSLTV+LL + A D ERAKD+ LEHTTL K
Sbjct 1109 YAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRK 1168
Query 274 VCTMAQVIYDPDPTKTIVPQDKQWVSDYYEFPDDEELPQSLGRWLLRVQLDSKVMIDKKL 333
V + YDP+P T+V +D++WV+ YYE PD + + WLLRV+LD K M D+KL
Sbjct 1169 VTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDV--ARISPWLLRVELDRKHMTDRKL 1226
Query 334 PMKEIGETIYREFDNDELDCIWTDDNSDELVLRIRIKKHGQEQDPNSDDQSSEIENRFLQ 393
M++I E I F D+L+CI+ DDN+++LVLRIRI D N + E+ ++
Sbjct 1227 TMEQIAEKINAGF-GDDLNCIFNDDNAEKLVLRIRI----MNSDENKMQEEEEVVDKMDD 1281
Query 394 KLMLHC-----LVGITLRGVSRITKVYMR----EEARTLYNETTGKFERVNNWVLDTDGC 444
+ L C L +TL+G+ +I+KVYM + + + G+F+ + W+L+TDG
Sbjct 1282 DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGV 1341
Query 445 NLDEVLTCPRVDSTRTTSNDITEIFDVLGIEAVRRALLRELRAVISFDGSYVNYRHLAIL 504
+L VL+ VD RTTSNDI EIF VLGIEAVR+AL REL VISFDGSYVNYRHLA+L
Sbjct 1342 SLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALL 1401
Query 505 CDTMTQKGYLMSITRHGINRVEKGPLKKCSFEETVEILMEAAVFAETDHLRGVTENIMLG 564
CDTMT +G+LM+ITRHG+NR + GPL KCSFEETV++LMEAA E+D ++GV+ENIMLG
Sbjct 1402 CDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLG 1461
Query 565 QLCPLGTGDVDLLIDEEKLKDAHRAVEPQQDLALEGLASPGGADGMSPDGSG-TPSPHNV 623
QL P GTG DLL+D EK K +E ++ G A G GM+P +G +PS +
Sbjct 1462 QLAPAGTGCFDLLLDAEKCK---YGMEIPTNIPGLGAA---GRSGMTPGAAGFSPSAASD 1515
Query 624 TSVFSP 629
S FSP
Sbjct 1516 ASGFSP 1521
> ath:AT4G35800 NRPB1; NRPB1 (RNA POLYMERASE II LARGE SUBUNIT);
DNA binding / DNA-directed RNA polymerase; K03006 DNA-directed
RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1840
Score = 545 bits (1404), Expect = 2e-154, Method: Compositional matrix adjust.
Identities = 300/649 (46%), Positives = 423/649 (65%), Gaps = 35/649 (5%)
Query 8 MQMDSEKIRRVYKHHFDQESYGKGWILDEELRTRLSVDFAAQQVLEDEFETIKEDKLRLC 67
++M + R +K+ D E++ ++ DE L + + V + E+ ++ D+ +L
Sbjct 906 LKMKKSEFDRTFKYEIDDENWNPTYLSDEHLEDLKGIR-ELRDVFDAEYSKLETDRFQLG 964
Query 68 KTIFPDGEVKQHIPINIMRLVEFAKAQFPASVEQLRKQDPVAIAKSVQELLNEKLVVVKQ 127
I +G+ +P+NI R + A+ F + ++ PV I +V +L E+L+VV
Sbjct 965 TEIATNGDSTWPLPVNIKRHIWNAQKTFKIDLRKISDMHPVEIVDAVDKL-QERLLVVPG 1023
Query 128 TCKADTISAEVQENATIFMKAHLRTVLNSRRLLEREQLGAKAVHWLLGEVERQFHRSLAH 187
D +S E Q+NAT+F LR+ L S+R+LE +L +A W++GE+E +F +SL
Sbjct 1024 D---DALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVA 1080
Query 188 AGECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINVAKTVKTPSLTVY 247
GE +G +AAQSIGEPATQMTLNTFH+AGV +KNVTLGVPRL+E+INVAK +KTPSL+VY
Sbjct 1081 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVY 1140
Query 248 LLDEGAYDQERAKDVQTHLEHTTLEKVCTMAQVIYDPDPTKTIVPQDKQWVSDYYEFPDD 307
L E + +E AK VQ LE+TTL V +V YDPDP TI+ +D ++V YYE PD+
Sbjct 1141 LTPEASKSKEGAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDFEFVRSYYEMPDE 1200
Query 308 EELPQSLGRWLLRVQLDSKVMIDKKLPMKEIGETIYREFDNDELDCIWTDDNSDELVLRI 367
+ P + WLLR++L+ ++M+DKKL M +I E I EFD D+L CI+ DDN+ +L+LRI
Sbjct 1201 DVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFD-DDLTCIFNDDNAQKLILRI 1259
Query 368 RIKKHGQEQDPNSD--DQSSEIENRFLQKLMLHCLVGITLRGVSRITKVYMREEARTLYN 425
RI ++ P + D+S+E ++ FL+K+ + L + LRG+ I KV++++ ++ ++
Sbjct 1260 RIM---NDEGPKGELQDESAE-DDVFLKKIESNMLTEMALRGIPDINKVFIKQVRKSRFD 1315
Query 426 ETTGKFERVNNWVLDTDGCNLDEVLTCPRVDSTRTTSNDITEIFDVLGIEAVRRALLREL 485
E G F+ W+LDT+G NL V+ VD RTTSN + EI +VLGIEAVRRALL EL
Sbjct 1316 E-EGGFKTSEEWMLDTEGVNLLAVMCHEDVDPKRTTSNHLIEIIEVLGIEAVRRALLDEL 1374
Query 486 RAVISFDGSYVNYRHLAILCDTMTQKGYLMSITRHGINRVEKGPLKKCSFEETVEILMEA 545
R VISFDGSYVNYRHLAILCDTMT +G+LM+ITRHGINR + GPL +CSFEETV+IL++A
Sbjct 1375 RVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDA 1434
Query 546 AVFAETDHLRGVTENIMLGQLCPLGTGDVDLLIDEEKLKDAHRAVEPQQDLALEGLASPG 605
A +AETD LRGVTENIMLGQL P+GTGD +L +++E LK+ A+E Q ++GL
Sbjct 1435 AAYAETDCLRGVTENIMLGQLAPIGTGDCELYLNDEMLKN---AIELQLPSYMDGLEF-- 1489
Query 606 GADGMSPDG---SGTPSPHNVTSVFSPMPFSTVYSSFAQSPSNPLSPTS 651
GM+P SGTP + S ++ SP+ LSP S
Sbjct 1490 ---GMTPARSPVSGTPYHEGMMS-----------PNYLLSPNMRLSPMS 1524
> dre:553347 polr2a, im:7136071; polymerase (RNA) II (DNA directed)
polypeptide A; K03006 DNA-directed RNA polymerase II subunit
RPB1 [EC:2.7.7.6]
Length=1972
Score = 544 bits (1401), Expect = 4e-154, Method: Compositional matrix adjust.
Identities = 305/661 (46%), Positives = 412/661 (62%), Gaps = 56/661 (8%)
Query 34 LDEELRTRLSVDFAAQQVLEDEFETIKEDKLRLCKTIFPDGEVKQHIPINIMRLVEFAKA 93
L E++ + + Q LE EFE ++ED+ + + IFP G+ K +P N+ R++ A+
Sbjct 931 LQEDVVKDVMTNAHVQSSLEREFEKMREDR-EILRAIFPTGDSKVVLPCNLARMIWNAQK 989
Query 94 QFPASVEQLRKQDPVAIAKSVQELLNEKLVVVKQTCKADTISAEVQENATIFMKAHLRTV 153
F + +P + V+EL ++KLV+V D +S + QENAT+ HLR+
Sbjct 990 IFRINPRAPTDLNPARVVDGVKEL-SKKLVIVNGD---DQLSRQAQENATLLFNIHLRST 1045
Query 154 LNSRRLLEREQLGAKAVHWLLGEVERQFHRSLAHAGECVGAIAAQSIGEPATQMTLNTFH 213
L S+R+ E +L +A WLLGE+E +F++S+AH GE VGA+AAQS+GEPATQMTLNTFH
Sbjct 1046 LCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAHPGEMVGALAAQSLGEPATQMTLNTFH 1105
Query 214 FAGVGSKNVTLGVPRLKELINVAKTVKTPSLTVYLLDEGAYDQERAKDVQTHLEHTTLEK 273
+AGV +KNVTLGVPRLKELIN++K KTPSLTV+LL + A D ERAKD+ LEHTTL K
Sbjct 1106 YAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFLLGQAARDAERAKDILCRLEHTTLRK 1165
Query 274 VCTMAQVIYDPDPTKTIVPQDKQWVSDYYEFPDDEELPQSLGRWLLRVQLDSKVMIDKKL 333
V + YDP+P T+V +D++WV+ YYE PD + + WLLR++LD K M D+KL
Sbjct 1166 VTANTAIYYDPNPQNTVVTEDQEWVNVYYEMPDFDV--TRISPWLLRIELDRKHMTDRKL 1223
Query 334 PMKEIGETIYREFDNDELDCIWTDDNSDELVLRIRIKKHGQEQDPNSDDQSSEIENRFLQ 393
M++I E I F D+L+CI+ DDN+++LVLRIRI D N + E+ ++
Sbjct 1224 TMEQIAEKINAGF-GDDLNCIFNDDNAEKLVLRIRI----MNSDENKFQEDEEVVDKMDD 1278
Query 394 KLMLHC-----LVGITLRGVSRITKVYMR----EEARTLYNETTGKFERVNNWVLDTDGC 444
+ L C L +TL+G+ +I+KVYM + + + G+F+ + W+L+TDG
Sbjct 1279 DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGV 1338
Query 445 NLDEVLTCPRVDSTRTTSNDITEIFDVLGIEAVRRALLRELRAVISFDGSYVNYRHLAIL 504
+L VL+ VD RTTSNDI EIF VLGIEAVR+AL REL VISFDGSYVNYRHLA+L
Sbjct 1339 SLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALL 1398
Query 505 CDTMTQKGYLMSITRHGINRVEKGPLKKCSFEETVEILMEAAVFAETDHLRGVTENIMLG 564
CDTMT +G+LM+ITRHGINR + GPL KCSFEETV++LMEA+ E+D ++GV+ENIMLG
Sbjct 1399 CDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEASSHGESDPMKGVSENIMLG 1458
Query 565 QLCPLGTGDVDLLIDEEKLKDAHR--------------------AVEPQQDLA------- 597
QL P GTG DLL+D EK K A P ++
Sbjct 1459 QLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMFFGSAPSPMSGMSPAMTPWN 1518
Query 598 -----LEGLASPGGADGMSPDGSG-TPSPHNVTSVFSPMPFSTVYSSFAQSPSNPLSPTS 651
G SP GM+P +G +PS + S FSP +S +S SP +P P S
Sbjct 1519 TGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPG-YSPAWSPTPGSPGSP-GPAS 1576
Query 652 P 652
P
Sbjct 1577 P 1577
> hsa:5430 POLR2A, MGC75453, POLR2, POLRA, RPB1, RPBh1, RPO2,
RPOL2, RpIILS, hRPB220, hsRPB1; polymerase (RNA) II (DNA directed)
polypeptide A, 220kDa (EC:2.7.7.6 2.7.7.48); K03006 DNA-directed
RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1970
Score = 541 bits (1395), Expect = 3e-153, Method: Compositional matrix adjust.
Identities = 294/597 (49%), Positives = 396/597 (66%), Gaps = 25/597 (4%)
Query 34 LDEELRTRLSVDFAAQQVLEDEFETIKEDKLRLCKTIFPDGEVKQHIPINIMRLVEFAKA 93
L E+L + + Q LE EFE ++ED+ + + IFP G+ K +P N++R++ A+
Sbjct 934 LQEDLVKDVLSNAHIQNELEREFERMREDR-EVLRVIFPTGDSKVVLPCNLLRMIWNAQK 992
Query 94 QFPASVEQLRKQDPVAIAKSVQELLNEKLVVVKQTCKADTISAEVQENATIFMKAHLRTV 153
F + P+ + + V+EL ++KLV+V D +S + QENAT+ HLR+
Sbjct 993 IFHINPRLPSDLHPIKVVEGVKEL-SKKLVIVNGD---DPLSRQAQENATLLFNIHLRST 1048
Query 154 LNSRRLLEREQLGAKAVHWLLGEVERQFHRSLAHAGECVGAIAAQSIGEPATQMTLNTFH 213
L SRR+ E +L +A WLLGE+E +F++++AH GE VGA+AAQS+GEPATQMTLNTFH
Sbjct 1049 LCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFH 1108
Query 214 FAGVGSKNVTLGVPRLKELINVAKTVKTPSLTVYLLDEGAYDQERAKDVQTHLEHTTLEK 273
+AGV +KNVTLGVPRLKELIN++K KTPSLTV+LL + A D ERAKD+ LEHTTL K
Sbjct 1109 YAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRK 1168
Query 274 VCTMAQVIYDPDPTKTIVPQDKQWVSDYYEFPDDEELPQSLGRWLLRVQLDSKVMIDKKL 333
V + YDP+P T+V +D++WV+ YYE PD + + WLLRV+LD K M D+KL
Sbjct 1169 VTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDV--ARISPWLLRVELDRKHMTDRKL 1226
Query 334 PMKEIGETIYREFDNDELDCIWTDDNSDELVLRIRIKKHGQEQDPNSDDQSSEIENRFLQ 393
M++I E I F D+L+CI+ DDN+++LVLRIRI D N + E+ ++
Sbjct 1227 TMEQIAEKINAGF-GDDLNCIFNDDNAEKLVLRIRI----MNSDENKMQEEEEVVDKMDD 1281
Query 394 KLMLHC-----LVGITLRGVSRITKVYMR----EEARTLYNETTGKFERVNNWVLDTDGC 444
+ L C L +TL+G+ +I+KVYM + + + G+F+ + W+L+TDG
Sbjct 1282 DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGV 1341
Query 445 NLDEVLTCPRVDSTRTTSNDITEIFDVLGIEAVRRALLRELRAVISFDGSYVNYRHLAIL 504
+L VL+ VD RTTSNDI EIF VLGIEAVR+AL REL VISFDGSYVNYRHLA+L
Sbjct 1342 SLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALL 1401
Query 505 CDTMTQKGYLMSITRHGINRVEKGPLKKCSFEETVEILMEAAVFAETDHLRGVTENIMLG 564
CDTMT +G+LM+ITRHG+NR + GPL KCSFEETV++LMEAA E+D ++GV+ENIMLG
Sbjct 1402 CDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLG 1461
Query 565 QLCPLGTGDVDLLIDEEKLKDAHRAVEPQQDLALEGLASPGGA-DGMSPDGSGTPSP 620
QL P GTG DLL+D EK K +E ++ G A P G G +P G SP
Sbjct 1462 QLAPAGTGCFDLLLDAEKCK---YGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISP 1515
> cel:F36A4.7 ama-1; AMAnitin resistant family member (ama-1);
K03006 DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1852
Score = 518 bits (1335), Expect = 2e-146, Method: Compositional matrix adjust.
Identities = 285/604 (47%), Positives = 401/604 (66%), Gaps = 34/604 (5%)
Query 51 VLEDEFETIKEDKLRLCKTIFPDGEVKQHIPINIMRLVEFAKAQFPASVEQLRKQDPVAI 110
++E E+ ++ED+ RL + IFP G+ K +P N+ RL+ A+ F + + P+ +
Sbjct 941 LVESEWSQLEEDR-RLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHV 999
Query 111 AKSVQELLNEKLVVVKQTCKADTISAEVQENATIFMKAHLRTVLNSRRLLEREQLGAKAV 170
V+EL ++KL++V D IS + Q NAT+ M LR+ L ++ + + +L ++A
Sbjct 1000 ISGVREL-SKKLIIVSGN---DEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAF 1055
Query 171 HWLLGEVERQFHRSLAHAGECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLK 230
WLLGE+E +F +++A GE VGA+AAQS+GEPATQMTLNTFH+AGV +KNVTLGVPRLK
Sbjct 1056 DWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLK 1115
Query 231 ELINVAKTVKTPSLTVYLLDEGAYDQERAKDVQTHLEHTTLEKVCTMAQVIYDPDPTKTI 290
E+INV+KT+KTPSLTV+L A D E+AKDV LEHTTL+KV + YDPDP T+
Sbjct 1116 EIINVSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTV 1175
Query 291 VPQDKQWVSDYYEFPDDEELPQSLGR---WLLRVQLDSKVMIDKKLPMKEIGETIYREFD 347
+ +D++WVS +YE PD + L R WLLR++LD K M+DKKL M+ I + I+ F
Sbjct 1176 IAEDEEWVSIFYEMPDHD-----LSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFG 1230
Query 348 NDELDCIWTDDNSDELVLRIRIKKHGQEQDPNSDDQSSEIENR-FLQKLMLHCLVGITLR 406
ND + I+TDDN+++LV R+RI G+++ ++Q ++E+ FL+ + + L +TL+
Sbjct 1231 ND-VHTIYTDDNAEKLVFRLRIA--GEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQ 1287
Query 407 GVSRITKVYMRE----EARTLYNETTGKFERVNNWVLDTDGCNLDEVLTCPRVDSTRTTS 462
G+ I+KVYM + + + + G F+ V +W+L+TDG L VL+ ++D RTTS
Sbjct 1288 GIPAISKVYMNQPNTDDKKRIIITPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTS 1347
Query 463 NDITEIFDVLGIEAVRRALLRELRAVISFDGSYVNYRHLAILCDTMTQKGYLMSITRHGI 522
NDI EIF+VLGIEAVR+A+ RE+ VISFDGSYVNYRHLA+LCD MT KG+LM+ITRHGI
Sbjct 1348 NDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGI 1407
Query 523 NRVEKGPLKKCSFEETVEILMEAAVFAETDHLRGVTENIMLGQLCPLGTGDVDLLIDEEK 582
NR E G L +CSFEETV+ILMEAAV AE D ++GV+ENIMLGQL GTG DL++D EK
Sbjct 1408 NRQEVGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEK 1467
Query 583 LKDAHRAVEPQQDLALEGLASPGGADGMSPDGSGTPSPHNVTSVFSPM--PFSTVYSSFA 640
K +E Q++ + G G +G+PS + SP + Y+ A
Sbjct 1468 CK---YGMEIPQNVVMGG--------GFYGSFAGSPSNREFSPAHSPWNSGVTPTYAGAA 1516
Query 641 QSPS 644
SP+
Sbjct 1517 WSPT 1520
> sce:YDL140C RPO21, RPB1, RPB220, SUA8; B220 (EC:2.7.7.6); K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1733
Score = 450 bits (1158), Expect = 7e-126, Method: Compositional matrix adjust.
Identities = 248/545 (45%), Positives = 351/545 (64%), Gaps = 22/545 (4%)
Query 45 DFAAQQVLEDEFETIKEDKLRLCKTIFPDGEVKQHIPINIMRLVEFAKAQFPASVEQLRK 104
D Q +L++E++ + +D+ + + +F DGE +P+NI R+++ A+ F ++ +
Sbjct 922 DLKLQVLLDEEYKQLVKDR-KFLREVFVDGEANWPLPVNIRRIIQNAQQTF--HIDHTKP 978
Query 105 QDPVA--IAKSVQELLNEKLVVVKQTCKADTISAEVQENATIFMKAHLRTVLNSRRLLER 162
D I V++L E L+V++ + I Q +A LR+ L +RR+L+
Sbjct 979 SDLTIKDIVLGVKDL-QENLLVLR---GKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQE 1034
Query 163 EQLGAKAVHWLLGEVERQFHRSLAHAGECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNV 222
+L +A W+L +E QF RS+ H GE VG +AAQSIGEPATQMTLNTFHFAGV SK V
Sbjct 1035 YRLTKQAFDWVLSNIEAQFLRSVVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKV 1094
Query 223 TLGVPRLKELINVAKTVKTPSLTVYLLDEGAYDQERAKDVQTHLEHTTLEKVCTMAQVIY 282
T GVPRLKE++NVAK +KTPSLTVYL A DQE+AK +++ +EHTTL+ V +++ Y
Sbjct 1095 TSGVPRLKEILNVAKNMKTPSLTVYLEPGHAADQEQAKLIRSAIEHTTLKSVTIASEIYY 1154
Query 283 DPDPTKTIVPQDKQWVSDYYEFPDDEELPQSLGR---WLLRVQLDSKVMIDKKLPMKEIG 339
DPDP T++P+D++ + ++ DEE QS + WLLR++LD M DK L M ++G
Sbjct 1155 DPDPRSTVIPEDEEIIQLHFSLL-DEEAEQSFDQQSPWLLRLELDRAAMNDKDLTMGQVG 1213
Query 340 ETIYREFDNDELDCIWTDDNSDELVLRIRIKKHGQEQDPNSDDQSSEI-ENRFLQKLMLH 398
E I + F ND L IW++DN ++L++R R+ + P S D +E E+ L+K+
Sbjct 1214 ERIKQTFKND-LFVIWSEDNDEKLIIRCRVVR------PKSLDAETEAEEDHMLKKIENT 1266
Query 399 CLVGITLRGVSRITKVYMREEARTLYNETTGKFERVNNWVLDTDGCNLDEVLTCPRVDST 458
L ITLRGV I +V M + R + + TG++ + WVL+TDG NL EV+T P +D T
Sbjct 1267 MLENITLRGVENIERVVMMKYDRKVPS-PTGEYVKEPEWVLETDGVNLSEVMTVPGIDPT 1325
Query 459 RTTSNDITEIFDVLGIEAVRRALLRELRAVISFDGSYVNYRHLAILCDTMTQKGYLMSIT 518
R +N +I +VLGIEA R AL +E+ VI+ DGSYVNYRH+A+L D MT +G L S+T
Sbjct 1326 RIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQGGLTSVT 1385
Query 519 RHGINRVEKGPLKKCSFEETVEILMEAAVFAETDHLRGVTENIMLGQLCPLGTGDVDLLI 578
RHG NR G L +CSFEETVEIL EA AE D RGV+EN++LGQ+ P+GTG D++I
Sbjct 1386 RHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSENVILGQMAPIGTGAFDVMI 1445
Query 579 DEEKL 583
DEE L
Sbjct 1446 DEESL 1450
> pfa:PFC0805w DNA-directed RNA polymerase II, putative; K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=2457
Score = 342 bits (878), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 163/267 (61%), Positives = 202/267 (75%), Gaps = 8/267 (2%)
Query 386 EIENRFLQKLMLHCLVGITLRGVSRITKVYMREEARTLYNETTGKFERVNNWVLDTDGCN 445
+ E+ FL+KLM CL + LRG+ ITKVYMREE++ Y+ GKF R ++WVLDTDGCN
Sbjct 1861 DTEDTFLKKLMEQCLSTLKLRGIENITKVYMREESKITYDSDNGKFVRSSHWVLDTDGCN 1920
Query 446 LDEVLTCPRVDSTRTTSNDITEIFDVLGIEAVRRALLRELRAVISFDGSYVNYRHLAILC 505
L+ + P+VD +T SNDI EIF+VLGIEAVRRALL+ELR VISFD SYVNYRHL+ILC
Sbjct 1921 LENIFCAPQVDFKKTVSNDIVEIFEVLGIEAVRRALLKELRTVISFDSSYVNYRHLSILC 1980
Query 506 DTMTQKGYLMSITRHGINRVEKGPLKKCSFEETVEILMEAAVFAETDHLRGVTENIMLGQ 565
D MTQKGYLMSITRHGINRV+KGPL KCSFEETVEIL+EAA FA+ D+LRG+TENIMLGQ
Sbjct 1981 DVMTQKGYLMSITRHGINRVDKGPLIKCSFEETVEILLEAAAFAQVDNLRGITENIMLGQ 2040
Query 566 LCPLGTGDVDLLIDEEKLKDAHRAVEPQQDLALEGLASPGGADGMSPDGSGTPSPHNVTS 625
LC +GTG D++ID +KL DA++ +E QDL G +P ++PD G SP + +
Sbjct 2041 LCKIGTGSFDIIIDNQKLNDANQNLETIQDLTSAGFTTPDSLHVITPD--GLQSPVAINT 2098
Query 626 VFSPMPFSTVYSSFAQSPSNPLSPTSP 652
+ SP+PFS Y+ +N LSPT+P
Sbjct 2099 INSPLPFSPTYN------ANLLSPTAP 2119
Score = 331 bits (849), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 157/265 (59%), Positives = 205/265 (77%), Gaps = 1/265 (0%)
Query 106 DPVAIAKSVQELLNEKLVVVKQTCKADTISAEVQENATIFMKAHLRTVLNSRRLLEREQL 165
+P+ + V L EKLV++KQ DT+S E Q NATI +KAHLRT LNS+ L + ++
Sbjct 1317 NPIDVVHKVNNFL-EKLVIIKQINSNDTLSVEAQNNATILLKAHLRTYLNSKLLTQTHKV 1375
Query 166 GAKAVHWLLGEVERQFHRSLAHAGECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTLG 225
K + WLL E+E+ F++SL H GECVGA+AAQSIGEPATQMTLNTFHFAGVGSKNVTLG
Sbjct 1376 SVKGLDWLLQEIEKIFYKSLCHPGECVGALAAQSIGEPATQMTLNTFHFAGVGSKNVTLG 1435
Query 226 VPRLKELINVAKTVKTPSLTVYLLDEGAYDQERAKDVQTHLEHTTLEKVCTMAQVIYDPD 285
VPRLKELIN+ K VKTPS T+YL D + DQ++AKD+ T LE+TTL+++ + AQ+IYDP+
Sbjct 1436 VPRLKELINIVKNVKTPSTTIYLDDMVSNDQQKAKDILTKLEYTTLKQLTSHAQIIYDPN 1495
Query 286 PTKTIVPQDKQWVSDYYEFPDDEELPQSLGRWLLRVQLDSKVMIDKKLPMKEIGETIYRE 345
T TI+ +DK WV+++YEFPD+++ SLG W+LR+QL + + +KKL MKEI IY
Sbjct 1496 TTTTILEEDKSWVNEFYEFPDEDDTQYSLGEWVLRIQLTNIHVNEKKLTMKEIVYIIYSV 1555
Query 346 FDNDELDCIWTDDNSDELVLRIRIK 370
F +DELD I+TDDNS++LVLRIR+K
Sbjct 1556 FSSDELDIIYTDDNSEDLVLRIRVK 1580
Score = 98.6 bits (244), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 69/95 (72%), Gaps = 3/95 (3%)
Query 6 ELMQMDSEKIRRVYKHHFDQESYGKGWIL---DEELRTRLSVDFAAQQVLEDEFETIKED 62
+LM++D+++I ++YK++FD+E +GK + + ++ R +D+ Q +L EFE + +
Sbjct 1040 DLMKLDNKEINKLYKYNFDEEPFGKDYYIGNKNDGSRNTSYIDYNKQNILNQEFEELYKC 1099
Query 63 KLRLCKTIFPDGEVKQHIPINIMRLVEFAKAQFPA 97
K LCK IFPDG+++QH+PIN+ RL+E+AK+QFP
Sbjct 1100 KNYLCKEIFPDGDIRQHLPINMNRLIEYAKSQFPC 1134
> cel:C42D4.8 rpc-1; RNA Polymerase, Class III (C) family member
(rpc-1); K03018 DNA-directed RNA polymerase III subunit RPC1
[EC:2.7.7.6]
Length=1400
Score = 192 bits (487), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 126/395 (31%), Positives = 203/395 (51%), Gaps = 54/395 (13%)
Query 183 RSLAHAGECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINVAKTVKTP 242
R++ G VGAIAA SIGEP+TQMTL TFHFAGV S N+T GVPR+KE+IN KT+ TP
Sbjct 1037 RAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGVPRIKEIINAVKTISTP 1096
Query 243 SLTVYLLDEGAYDQERAKDVQTHLEHTTLEKVCTMAQVIYDPDPTKTIVPQDKQWVSDYY 302
+T LLD YD+ A+ V+ +E TTL ++C + +Y PD DY+
Sbjct 1097 IITAALLD--PYDESLARRVKARIEKTTLGEICDYIEEVYLPD--------------DYF 1140
Query 303 EFPDDEELPQSLGRWLLRVQLDSKVMIDKKLPMKEIGETIYREFDNDELDCIWTDDNSDE 362
L V+L+SK + + L ++ E+I ++ C
Sbjct 1141 ----------------LLVKLNSKRI--RLLQLEVCMESISYAIATSKV-CPQMRG---- 1177
Query 363 LVLRIRIKKHGQEQDPNSDDQSSEIENRFLQKLMLHCLVGITLRGVSRITKVYMREEART 422
+I HG+ +S++ +++ + L + ++G+ + + + +
Sbjct 1178 ----CKIVAHGKTMMAIRPPSTSKLSKTMTMQILKYSLANVVVKGIPSVNRCVIHAD--- 1230
Query 423 LYNETTGKFERVNNWVLDTDGCNLDEVLTCPRVDSTRTTSNDITEIFDVLGIEAVRRALL 482
E G F + L +G + VL+ VD +T N+ + DVLGIEA R ++
Sbjct 1231 ---EKKGDF-----YSLLVEGTDFRSVLSSVGVDPRKTNFNNALVVADVLGIEAARSCII 1282
Query 483 RELRAVISFDGSYVNYRHLAILCDTMTQKGYLMSITRHGINRVEKGPLKKCSFEETVEIL 542
E+ A + G ++ RH+ +L D MT +G ++ ITR+G+ +++ L SFE+T++ L
Sbjct 1283 NEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLGITRNGLVKMKDSVLLLASFEKTMDHL 1342
Query 543 MEAAVFAETDHLRGVTENIMLGQLCPLGTGDVDLL 577
EAA F++ D + GV+E I++G +GTG L+
Sbjct 1343 FEAAFFSQRDVIHGVSECIIMGTPMTVGTGTFKLM 1377
> tgo:TGME49_106290 DNA-directed RNA polymerase III largest subunit,
putative (EC:2.7.7.6); K03018 DNA-directed RNA polymerase
III subunit RPC1 [EC:2.7.7.6]
Length=1746
Score = 188 bits (477), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 133/408 (32%), Positives = 210/408 (51%), Gaps = 60/408 (14%)
Query 179 RQFHRSLAHAGECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINVAKT 238
R++ ++++ AGE VGA+ AQSIGEP TQMTL TFHFAGV S NVTLGVPR+KE+IN A+
Sbjct 1369 RKYVKAISEAGEAVGAMGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAQK 1428
Query 239 VKTPSLTVYLLDEGAYDQERAKDVQTHLEHTTLEKVCTMAQVIYDPDPTKTIVPQDKQWV 298
++TP + V L+++ Y+ A V+ +E T L + C+ + +Y PD
Sbjct 1429 IQTPIIVVPLVNDEDYNY--AVMVKNRIEKTLLSECCSYIKEVYAPD------------- 1473
Query 299 SDYYEFPDDEELPQSLGRWLLRVQLDS----KVMIDKKLPMKEIGETIYREFDNDELDCI 354
G WL+ V+LD K+ +D + + + I R+ ++ +
Sbjct 1474 ----------------GAWLV-VKLDQHTIRKLFLD--INANTVKDAILRQ---TAVNKV 1511
Query 355 WTDDNSDELV--LRIRIKKHGQEQDPNSDDQSSEIENRFLQKLMLHCLVGITLRGVSRIT 412
NS E++ ++R+ G Q LQ L L L+ I L G +
Sbjct 1512 RITKNSVEIINEWKVRVMPPGGNQIFFQ-----------LQALKLG-LLNIVLCGHKDVK 1559
Query 413 KVYMREEARTLYNETTGKFERVNNWVLDTDGCNLDEVLTCPRVDSTRTTSNDITEIFDVL 472
+ ++ E ++T + + L +G L +V+ V + + TSN + E+ +L
Sbjct 1560 RGVIKCEQVEQPDKT-----KKTVYGLAVEGYGLRDVMGTQGVKALQATSNHVMEVAQIL 1614
Query 473 GIEAVRRALLRELRAVISFDGSYVNYRHLAILCDTMTQKGYLMSITRHGINRVEKGPLKK 532
GIEA R ++ E+R + ++ RH+ +L D MT +G ++ I R GI ++ L
Sbjct 1615 GIEAARAVIISEIRKCMDAYSMDIDCRHMTLLGDVMTFRGEVLGINRFGIQKMRASTLML 1674
Query 533 CSFEETVEILMEAAVFAETDHLRGVTENIMLGQLCPLGTGDVDLLIDE 580
SFEET E L EAAV D ++GV+E I++G+ LGTG DLL+ +
Sbjct 1675 ASFEETNEHLFEAAVHHRADPVKGVSECIIMGKQVSLGTGSFDLLLSQ 1722
> sce:YOR116C RPO31, RPC1, RPC160; C160 (EC:2.7.7.6); K03018 DNA-directed
RNA polymerase III subunit RPC1 [EC:2.7.7.6]
Length=1460
Score = 183 bits (465), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 127/419 (30%), Positives = 213/419 (50%), Gaps = 53/419 (12%)
Query 164 QLGAKAVHWLLGEVERQFHRSLAHAGECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVT 223
++ K+V L ++ ++ G +GAI AQSIGEP TQMTL TFHFAGV S NVT
Sbjct 1061 RISEKSVRKFLEIALFKYRKARLEPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVT 1120
Query 224 LGVPRLKELINVAKTVKTPSLTVYLLDEGAYDQERAKDVQTHLEHTTLEKVCTMAQVIYD 283
LGVPR+KE+IN +K + TP + L+++ D+ A+ V+ +E T L V Q +Y
Sbjct 1121 LGVPRIKEIINASKVISTPIINAVLVNDN--DERAARVVKGRVEKTLLSDVAFYVQDVYK 1178
Query 284 PDPTKTIVPQDKQWVSDYYEFPDDEELPQSLGRWLLRVQLDSKVMIDKKLPMKEIGETIY 343
+L +R+ L + + +L +++I I
Sbjct 1179 ----------------------------DNLSFIQVRIDLGTIDKLQLELTIEDIAVAIT 1210
Query 344 REFDNDELDCIWTDDN---SDELVLRIRIKKHGQEQDPNSDDQSSEIENRFLQKLMLHCL 400
R +L +D N D + + + + + + S + SE + + + + L
Sbjct 1211 RA---SKLKIQASDVNIIGKDRIAINVFPEGYKAKSISTSAKEPSENDVFYRMQQLRRAL 1267
Query 401 VGITLRGVSRITK--VYMREEARTLYNETTGKFERVNNWVLDTDGCNLDEVLTCPRVDST 458
+ ++G+ I++ + +R++ GK E L +G L +V+ V +
Sbjct 1268 PDVVVKGLPDISRAVINIRDD---------GKRE------LLVEGYGLRDVMCTDGVIGS 1312
Query 459 RTTSNDITEIFDVLGIEAVRRALLRELRAVISFDGSYVNYRHLAILCDTMTQKGYLMSIT 518
RTT+N + E+F VLGIEA R +++RE+ +S G V+ RH+ +L D MT KG ++ IT
Sbjct 1313 RTTTNHVLEVFSVLGIEAARYSIIREINYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGIT 1372
Query 519 RHGINRVEKGPLKKCSFEETVEILMEAAVFAETDHLRGVTENIMLGQLCPLGTGDVDLL 577
R G++++ L+ SFE+T + L +AA + + D + GV+E I+LGQ +GTG ++
Sbjct 1373 RFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMSIGTGSFKVV 1431
> bbo:BBOV_III007400 17.m07648; RNA polymerase Rpb1, domain containing
protein; K03018 DNA-directed RNA polymerase III subunit
RPC1 [EC:2.7.7.6]
Length=1541
Score = 183 bits (464), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 132/404 (32%), Positives = 204/404 (50%), Gaps = 61/404 (15%)
Query 179 RQFHRSLAHAGECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINVAKT 238
+ + R++ GE +GA+ AQSIGEP TQMTL TFHFAGV S NVTLGVPR+KE+IN + T
Sbjct 1188 KDYQRAICVPGEAIGALGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASST 1247
Query 239 VKTPSLTVYLLDEGAYDQERAKDVQTHLEHTTLEKVCTMAQVIYDPDPTKTIVPQDKQWV 298
++TP + V L++ D E A V+ +E TTL +VC+ + I+ P +
Sbjct 1248 IQTPIIEVPLINNK--DFEYALMVKARIEKTTLGQVCSDIKEIFGPTGAQ---------- 1295
Query 299 SDYYEFPDDEELPQSLGRWLLRVQLDSKVMIDKKLPMKEIGETIYREFDNDELDCIWTDD 358
LRV L+ ++ KKL + +I RE D
Sbjct 1296 --------------------LRVTLNENLI--KKL-LLQIDAFKVREIILD--------- 1323
Query 359 NSDELVLRIRIKKHG----QEQDPNSDDQSSEIENRFLQKLMLHCLVGITLRGVSRITKV 414
+ ++ + ++ KH + N D +S+ F Q ++ L+ I + G I +
Sbjct 1324 --NSVMTKFKLGKHAISVVNKYQLNIDLATSQ-HQFFQQHALIVTLLQIMVAGGKSIKRA 1380
Query 415 YMREEARTLYNETTGKFERVNNWVLDTDGCNLDEVLTCPRVDSTRTTSNDITEIFDVLGI 474
+++E + G + L +G L EV+ V ST SN + E+ VLGI
Sbjct 1381 VIKKET-----DADGF-----RYQLAVEGYGLQEVIGAAGVKSTGVKSNHVLEVAKVLGI 1430
Query 475 EAVRRALLRELRAVISFDGSYVNYRHLAILCDTMTQKGYLMSITRHGINRVEKGPLKKCS 534
EA R ++ E++ + ++ R++ +L D MT +G ++ I R GI ++ L S
Sbjct 1431 EAARSVIISEIQKCMDAYSIDIDQRYMKLLGDVMTFRGEVIGINRFGIQKMRASTLMLAS 1490
Query 535 FEETVEILMEAAVFAETDHLRGVTENIMLGQLCPLGTGDVDLLI 578
FEET E L EAAV D ++GV+E I++G+ PLGTG D+L+
Sbjct 1491 FEETNEHLFEAAVHRLRDPIKGVSECIIMGKQVPLGTGAFDVLL 1534
> tpv:TP04_0648 DNA-directed RNA polymerase III largest subunit
(EC:2.7.7.6); K03018 DNA-directed RNA polymerase III subunit
RPC1 [EC:2.7.7.6]
Length=1617
Score = 179 bits (453), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 118/400 (29%), Positives = 200/400 (50%), Gaps = 53/400 (13%)
Query 179 RQFHRSLAHAGECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINVAKT 238
+ + +SL GE +GA+ +QSIGEPATQMTL TFHFAGV S NVTLGVPR++E+IN
Sbjct 1269 KDYQKSLCEPGEAIGALGSQSIGEPATQMTLKTFHFAGVASMNVTLGVPRIQEIINATSL 1328
Query 239 VKTPSLTVYLLDEGAYDQERAKDVQTHLEHTTLEKVCTMAQVIYDPDPTKTIVPQDKQWV 298
+ TP + V L D YD A V++ +E TTL ++C + +Y P +K + ++ +
Sbjct 1329 IATPIIEVPLEDNTDYD--FALKVKSKIEKTTLGQICLNIKQLYTPQMSKLLFTLNRDLI 1386
Query 299 SDYYEFPDDEELPQSLGRWLLRVQLDSKVMIDKKLPMKEIGETIYREFDNDELDCIWTDD 358
L +Q+++ + D + +G+ + C+++
Sbjct 1387 EQ------------------LHIQVNADKVRDIIIDSGCLGKVKIHK------SCVYSIG 1422
Query 359 NSDELVLRIRIKKHGQEQDPNSDDQSSEIENRFLQKLMLHCLVGITLRGVSRITKVYMRE 418
+I I+ +Q + F Q ++ L + + G + + ++
Sbjct 1423 K-----WQICIELPSNQQ------------HFFQQNSLISGLTQLVVAGSKSVKRAVIKR 1465
Query 419 EARTLYNETTGKFERVNNWVLDTDGCNLDEVLTCPRVDSTRTTSNDITEIFDVLGIEAVR 478
E+ + N+ + +G L EV+ C V S+ SN + E+ VLGIEA R
Sbjct 1466 EST----------PQGPNYQIAVEGYGLQEVMGCYGVMSSAVKSNHVAEVAKVLGIEAAR 1515
Query 479 RALLRELRAVISFDGSYVNYRHLAILCDTMTQKGYLMSITRHGINRVEKGPLKKCSFEET 538
++ E++ + ++ R++ +L D MT +G ++ I R GI ++ L SFEET
Sbjct 1516 SVIISEIQRCMDAYSIDIDCRYMKLLGDVMTFRGEVVGINRFGIQKMRSSALMLASFEET 1575
Query 539 VEILMEAAVFAETDHLRGVTENIMLGQLCPLGTGDVDLLI 578
+ L+EAA+ D ++GV+E I++G+ LGTG D+L+
Sbjct 1576 NDHLLEAALHHRRDPIKGVSECIIMGKPISLGTGSFDILM 1615
> ath:AT5G60040 NRPC1; NRPC1; DNA binding / DNA-directed RNA polymerase/
ribonucleoside binding / zinc ion binding; K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]
Length=1376
Score = 173 bits (438), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 119/390 (30%), Positives = 189/390 (48%), Gaps = 51/390 (13%)
Query 188 AGECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINVAKTVKTPSLTVY 247
AG +G I AQSIGEP TQMTL TFHFAGV S N+T GVPR+ E+IN +K + TP ++
Sbjct 1020 AGTAIGTIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRINEIINASKNISTPVISAE 1079
Query 248 LLDEGAYDQERAKDVQTHLEHTTLEKVCTMAQVIYDPDPTKTIVPQDKQWVSDYYEFPDD 307
L E + A+ V+ +E TTL +V +V+ + D + +
Sbjct 1080 L--ENPLELTSARWVKGRIEKTTLGQVAESIEVLMTSTSASVRIILDNKII--------- 1128
Query 308 EELPQSLGRWLLRVQLDSKVMIDKKLPMKEIGETIYREFDNDELDCIWTDDNSDELVLRI 367
EE S+ W ++ + K P ++ DND I
Sbjct 1129 EEACLSITPWSVKNSI-------LKTPRIKLN-------DND-----------------I 1157
Query 368 RIKKHGQEQDPNSDDQSSEIENRFLQKLMLHCLVGITLRGVSRITKVYMREEARTLYNET 427
R+ G + P D + L+ + L I + G+ + +V + E+ +
Sbjct 1158 RVLDTGLDITPVVDKSRAHFNLHNLKNV----LPNIIVNGIKTVERVVVAEDM-----DK 1208
Query 428 TGKFERVNNWVLDTDGCNLDEVLTCPRVDSTRTTSNDITEIFDVLGIEAVRRALLRELRA 487
+ + + W L +G NL V+ P ++ TTSN++ E+ LGIEA R ++ E+
Sbjct 1209 SKQIDGKTKWKLFVEGTNLLAVMGTPGINGRTTTSNNVVEVSKTLGIEAARTTIIDEIGT 1268
Query 488 VISFDGSYVNYRHLAILCDTMTQKGYLMSITRHGINRVEKGPLKKCSFEETVEILMEAAV 547
V+ G ++ RH+ +L D MT +G ++ I R GI +++K L + SFE T + L AA
Sbjct 1269 VMGNHGMSIDIRHMMLLADVMTYRGEVLGIQRTGIQKMDKSVLMQASFERTGDHLFSAAA 1328
Query 548 FAETDHLRGVTENIMLGQLCPLGTGDVDLL 577
+ D++ GVTE +++G LGTG + +L
Sbjct 1329 SGKVDNIEGVTECVIMGIPMKLGTGILKVL 1358
> mmu:218832 Polr3a, 9330175N20Rik, BC053071, MGC62420, RPC1,
RPC155; polymerase (RNA) III (DNA directed) polypeptide A (EC:2.7.7.6);
K03018 DNA-directed RNA polymerase III subunit RPC1
[EC:2.7.7.6]
Length=1390
Score = 171 bits (434), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 139/512 (27%), Positives = 239/512 (46%), Gaps = 81/512 (15%)
Query 81 PINIMRLVEFAKAQFPASVE-QLRKQDPVAIAKSVQELLNEKLVVVKQTCKADTISAEVQ 139
P+ R+++ KA +P E L K D A+++ + NE L C D+ E++
Sbjct 918 PLEFKRVLDNIKAVYPCQTEPALSKNDLTLTAEAIMKK-NEFL------CCQDSFLQEIK 970
Query 140 ENATIFMKAHLRTVLNSRR--------------LLEREQLGAKAVHWLLGEVERQFHRSL 185
F+K + +R L + +++ + L ++ R+
Sbjct 971 ----TFIKGVSEKIKKTRDKYGINDNGTTEPRVLYQLDRITPTQIEKFLETCRDKYMRAQ 1026
Query 186 AHAGECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINVAKTVKTPSLT 245
G VGA+ AQSIGEP TQMTL TFHFAGV S N+TLGVPR+KE+IN +K + TP +T
Sbjct 1027 MEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKAISTPIIT 1086
Query 246 VYLLDEGAYDQERAKDVQTHLEHTTLEKVCTMAQVIYDPDPTKTIVPQDKQWVSDYYEFP 305
L + D + A+ V+ +E T L ++ + ++ PD +V + +
Sbjct 1087 AQLDKDD--DADYARLVKGRIEKTLLGEISEYIEEVFLPDDCFILVKLSLERIR------ 1138
Query 306 DDEELPQSLGRWLLRVQLDSKVMIDKKLPMKEIGETIYREFDNDELDCIWTDDNSDELVL 365
LLR+++++ ET+ +L D
Sbjct 1139 ------------LLRLEVNA--------------ETVRYSICTSKLRVKPGD-------- 1164
Query 366 RIRIKKHGQEQDPNSDDQSSEIENRFLQKLMLHCLVGITLRGVSRITKVYMREEARTLYN 425
+ HG+ + ++S+ ++ + + L + ++G+ +++ + +
Sbjct 1165 ---VAVHGEAVVCVTPRENSKSSMYYVLQFLKEDLPKVVVQGIPEVSRAVIH------ID 1215
Query 426 ETTGKFERVNNWVLDTDGCNLDEVLTCPRVDSTRTTSNDITEIFDVLGIEAVRRALLREL 485
E +GK + L +G NL V+ V TRTTSN+ E+ LGIEA R ++ E+
Sbjct 1216 EQSGK----EKFKLLVEGDNLRAVMATHGVKGTRTTSNNTYEVEKTLGIEAARTTIINEI 1271
Query 486 RAVISFDGSYVNYRHLAILCDTMTQKGYLMSITRHGINRVEKGPLKKCSFEETVEILMEA 545
+ + G ++ RH+ +L D MT KG ++ ITR G+ ++++ L SFE+T + L +A
Sbjct 1272 QYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDA 1331
Query 546 AVFAETDHLRGVTENIMLGQLCPLGTGDVDLL 577
A F + D + GV+E I++G +GTG LL
Sbjct 1332 AYFGQKDSVCGVSECIIMGIPMNIGTGLFKLL 1363
> hsa:11128 POLR3A, RPC1, RPC155, hRPC155; polymerase (RNA) III
(DNA directed) polypeptide A, 155kDa (EC:2.7.7.6); K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]
Length=1390
Score = 171 bits (433), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 139/514 (27%), Positives = 239/514 (46%), Gaps = 85/514 (16%)
Query 81 PINIMRLVEFAKAQFPASVEQLRKQDPVAIAKSVQELLNEKLVVVKQT---CKADTISAE 137
P+ R+++ KA FP P A S EL+ ++K++ C D+ E
Sbjct 918 PLEFKRVLDNIKAVFPC---------PSEPALSKNELILTTESIMKKSEFLCCQDSFLQE 968
Query 138 VQENATIFMKAHLRTVLNSRR--------------LLEREQLGAKAVHWLLGEVERQFHR 183
+++ F+K + +R L + +++ V L ++ R
Sbjct 969 IKK----FIKGVSEKIKKTRDKYGINDNGTTEPRVLYQLDRITPTQVEKFLETCRDKYMR 1024
Query 184 SLAHAGECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINVAKTVKTPS 243
+ G VGA+ AQSIGEP TQMTL TFHFAGV S N+TLGVPR+KE+IN +K + TP
Sbjct 1025 AQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKAISTPI 1084
Query 244 LTVYLLDEGAYDQERAKDVQTHLEHTTLEKVCTMAQVIYDPDPTKTIVPQDKQWVSDYYE 303
+T L + D + A+ V+ +E T L ++ + ++ PD +V + +
Sbjct 1085 ITAQLDKDD--DADYARLVKGRIEKTLLGEISEYIEEVFLPDDCFILVKLSLERIR---- 1138
Query 304 FPDDEELPQSLGRWLLRVQLDSKVMIDKKLPMKEIGETIYREFDNDELDCIWTDDNSDEL 363
LLR+++++ ET+ +L D
Sbjct 1139 --------------LLRLEVNA--------------ETVRYSICTSKLRVKPGD------ 1164
Query 364 VLRIRIKKHGQEQDPNSDDQSSEIENRFLQKLMLHCLVGITLRGVSRITKVYMREEARTL 423
+ HG+ + ++S+ ++ + + L + ++G+ +++ +
Sbjct 1165 -----VAVHGEAVVCVTPRENSKSSMYYVLQFLKEDLPKVVVQGIPEVSRAVIH------ 1213
Query 424 YNETTGKFERVNNWVLDTDGCNLDEVLTCPRVDSTRTTSNDITEIFDVLGIEAVRRALLR 483
+E +GK + L +G NL V+ V TRTTSN+ E+ LGIEA R ++
Sbjct 1214 IDEQSGK----EKYKLLVEGDNLRAVMATHGVKGTRTTSNNTYEVEKTLGIEAARTTIIN 1269
Query 484 ELRAVISFDGSYVNYRHLAILCDTMTQKGYLMSITRHGINRVEKGPLKKCSFEETVEILM 543
E++ + G ++ RH+ +L D MT KG ++ ITR G+ ++++ L SFE+T + L
Sbjct 1270 EIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLF 1329
Query 544 EAAVFAETDHLRGVTENIMLGQLCPLGTGDVDLL 577
+AA F + D + GV+E I++G +GTG LL
Sbjct 1330 DAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLL 1363
> cpv:cgd6_3290 DNA-directed RNA polymerase III C1 subunit ; K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]
Length=1871
Score = 169 bits (429), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 123/401 (30%), Positives = 207/401 (51%), Gaps = 22/401 (5%)
Query 180 QFHRSLAHAGECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINVAKTV 239
++ +++ GE VGAIAAQSIGEP TQMTL TFHFAGV S NVTLGVPR+KE+IN A +
Sbjct 1452 KYMKAITEPGEAVGAIAAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAATKI 1511
Query 240 KTPSLTVYLLDEGAYDQERAKDVQTHLEHTTLEKVCTMAQVIYDPDPTKTIVPQDKQWVS 299
TP + L E D A+ V+ + T L +V + + +Y P+ + +++ +
Sbjct 1512 LTPIIEAKL--ENDSDFNYAQIVKGSIVKTLLNEVVSDIEELYSPNGVFININLNEETIK 1569
Query 300 DYYEFPDDEELPQSLGRWLLRVQLDSKVMIDK-KLPMKEIGETIYREFDNDELDCIWTDD 358
+Y + + +R + S I K KL +++I + D +L +
Sbjct 1570 GHY---------LDINAYTVRDSIVSHGPISKIKLKLEDI-----QVLDLWKLSILIGGG 1615
Query 359 NSDELVLRIRIKKHGQEQDPNSDDQSSEIENRFLQKLMLHCLVGITLRGVSRITKVYMRE 418
S I G N+ ++ + F +L+ L + + G+ I + +R+
Sbjct 1616 ISQIGSSSNNINGTGNVNTLNTGIGNT-MNVYFQTQLLKKGLQNVVVSGIPGIKRSVIRQ 1674
Query 419 EARTLYNETTGKFERVNNWVLDTDGCNLDEVLTCPRVDSTRTTSNDITEIFDVLGIEAVR 478
+ + + TG E+ + L +G L +++ + T T SN + E+ +VLGIEA R
Sbjct 1675 DDKE--DPITG--EKRKCYSLAVEGYGLLKLMGINGIIGTTTVSNHVMEVREVLGIEAAR 1730
Query 479 RALLRELRAVISFDGSYVNYRHLAILCDTMTQKGYLMSITRHGINRVEKGPLKKCSFEET 538
+ +++E++ + ++ RH+ +L D MT +G ++ I+R GI ++ L SFEET
Sbjct 1731 KVIIQEVQKCMDAYSMDIDLRHIQLLADIMTFRGDVLGISRFGIQKMRTSTLMLASFEET 1790
Query 539 VEILMEAAVFAETDHLRGVTENIMLGQLCPLGTGDVDLLID 579
E L EAA D + GV+E +++G+ +GTG D+L +
Sbjct 1791 NEHLFEAAFQNRVDPVFGVSECVIMGKPIKIGTGSFDILYN 1831
> pfa:PF13_0150 DNA-directed RNA polymerase 3 largest subunit
(EC:2.7.7.6); K03018 DNA-directed RNA polymerase III subunit
RPC1 [EC:2.7.7.6]
Length=2356
Score = 97.1 bits (240), Expect = 2e-19, Method: Composition-based stats.
Identities = 47/96 (48%), Positives = 68/96 (70%), Gaps = 2/96 (2%)
Query 180 QFHRSLAHAGECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINVAKTV 239
++ + ++ G+ VG+I+AQSIGEP TQMTL TFHFAGV S NVTLGVPR+KE+IN + ++
Sbjct 1782 KYFKYISTPGDAVGSISAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASNSI 1841
Query 240 KTPSLTVYLLDEGAYDQERAKDVQTHLEHTTLEKVC 275
+TP L + L Y+ A +++ LE TT+ +C
Sbjct 1842 QTPILNIPLEVNDNYN--FALMMKSKLEKTTIRDIC 1875
Score = 88.6 bits (218), Expect = 8e-17, Method: Composition-based stats.
Identities = 47/138 (34%), Positives = 75/138 (54%), Gaps = 0/138 (0%)
Query 442 DGCNLDEVLTCPRVDSTRTTSNDITEIFDVLGIEAVRRALLRELRAVISFDGSYVNYRHL 501
+G +L+ VL VD SN + +F VLGIEA R ++ E++ + ++ RH+
Sbjct 2195 EGNSLNYVLGLEGVDFKHIISNHVINVFQVLGIEAARITIINEIKKCVEAYSIDIDIRHI 2254
Query 502 AILCDTMTQKGYLMSITRHGINRVEKGPLKKCSFEETVEILMEAAVFAETDHLRGVTENI 561
+L D M G ++ I R GI + + L SFEET E L ++ F D + ++E+I
Sbjct 2255 MLLADIMAFTGDILGINRFGIQKARQSTLMLASFEETNEHLFVSSFFKNVDEINNISESI 2314
Query 562 MLGQLCPLGTGDVDLLID 579
++G+ P+GTG LL D
Sbjct 2315 IVGKNIPIGTGAFQLLYD 2332
> ath:AT3G57660 NRPA1; NRPA1; DNA binding / DNA-directed RNA polymerase/
zinc ion binding; K02999 DNA-directed RNA polymerase
I subunit RPA1 [EC:2.7.7.6]
Length=1670
Score = 95.9 bits (237), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 93/170 (54%), Gaps = 11/170 (6%)
Query 110 IAKSVQELLNEKLVVVKQTCKADTISAEVQ--ENATIFMKAHLRTVLNSRRLLEREQLGA 167
I K + +N+ +V+ Q C D +S + I +K + + + ER + +
Sbjct 1076 IEKFKELTINQDMVL--QKCSEDMLSGASSYISDLPISLKKGAEKFVEAMPMNER--IAS 1131
Query 168 KAVHW--LLGEVERQFHRSLAHAGECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTLG 225
K V LL V+ +F SLA GE VG +AAQS+GEP+TQMTLNTFH AG G NVTLG
Sbjct 1132 KFVRQEELLKLVKSKFFASLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLG 1191
Query 226 VPRLKE-LINVAKTVKTPSLTVYLLDEGAYDQERAKDVQTHLEHTTLEKV 274
+PRL+E L+ A +KTP +T LL +E A D+ L T+ +
Sbjct 1192 IPRLQEILMTAAANIKTPIMTCPLLK--GKTKEDANDITDRLRKITVADI 1239
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 62/124 (50%), Gaps = 0/124 (0%)
Query 454 RVDSTRTTSNDITEIFDVLGIEAVRRALLRELRAVISFDGSYVNYRHLAILCDTMTQKGY 513
++D SN I ++ ++ G+EA R ++RE+ V G V+ RHL ++ D MT G
Sbjct 1542 KLDVRYLYSNSIHDMLNIFGVEAARETIIREINHVFKSYGISVSIRHLNLIADYMTFSGG 1601
Query 514 LMSITRHGINRVEKGPLKKCSFEETVEILMEAAVFAETDHLRGVTENIMLGQLCPLGTGD 573
++R G P + +FE + +++AA + E D L + I LG GTG
Sbjct 1602 YRPMSRMGGIAESTSPFCRMTFETATKFIVQAATYGEKDTLETPSARICLGLPALSGTGC 1661
Query 574 VDLL 577
DL+
Sbjct 1662 FDLM 1665
> hsa:25885 POLR1A, A190, DKFZp586M0122, FLJ21915, MGC87965, RPA1,
RPA194, RPO1-4, RPO14; polymerase (RNA) I polypeptide A,
194kDa (EC:2.7.7.6); K02999 DNA-directed RNA polymerase I
subunit RPA1 [EC:2.7.7.6]
Length=1720
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 81/129 (62%), Gaps = 8/129 (6%)
Query 177 VERQFHRSLAHAGECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINVA 236
++ ++ RSL GE VG +AAQSIGEP+TQMTLNTFHFAG G NVTLG+PRL+E++ VA
Sbjct 1196 LQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVA 1255
Query 237 K-TVKTPSLTVYLLDEGAYDQERAKDVQTHLEHTTLEKVCTMAQVIYDPDPTKTIVPQDK 295
+KTP ++V +L+ +R K ++ L +VC + +V+ D ++ ++K
Sbjct 1256 SANIKTPMMSVPVLNTKK-ALKRVKSLKKQ-----LTRVC-LGEVLQKIDVQESFCMEEK 1308
Query 296 QWVSDYYEF 304
Q Y+
Sbjct 1309 QNKFQVYQL 1317
Score = 85.5 bits (210), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 84/157 (53%), Gaps = 3/157 (1%)
Query 421 RTLYNETTGKFERVNNWVLDTDGCNLDEVLTCPRV-DSTRTTSNDITEIFDVLGIEAVRR 479
R L NETT + VL+T+G NL E+ V D R SNDI I + GIEA R
Sbjct 1561 RCLLNETTNN-KNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIHAIANTYGIEAALR 1619
Query 480 ALLRELRAVISFDGSYVNYRHLAILCDTMTQKGYLMSITRHGINRVEKGPLKKCSFEETV 539
+ +E++ V + G V+ RHL+++ D M +G + R GI R PL++ +FE +
Sbjct 1620 VIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-RSNSSPLQQMTFETSF 1678
Query 540 EILMEAAVFAETDHLRGVTENIMLGQLCPLGTGDVDL 576
+ L +A + D LR + +++G++ GTG +L
Sbjct 1679 QFLKQATMLGSHDELRSPSACLVVGKVVRGGTGLFEL 1715
> dre:100334143 polymerase (RNA) III (DNA directed) polypeptide
A, 155kDa-like; K03018 DNA-directed RNA polymerase III subunit
RPC1 [EC:2.7.7.6]
Length=673
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 62/92 (67%), Gaps = 2/92 (2%)
Query 180 QFHRSLAHAGECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINVAKTV 239
++ R+ G VGA+ AQSIGEP TQMTL TFHFAGV S N+TLGVPR+KE+IN +K +
Sbjct 408 KYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKNI 467
Query 240 KTPSLTVYLLDEGAYDQERAKDVQTHLEHTTL 271
TP ++ L + D + A+ V+ +E T L
Sbjct 468 STPIISANL--DTNDDPDFARLVKGRIEKTLL 497
> mmu:20019 Polr1a, 194kDa, 3010014K16Rik, RPA194, Rpo1-4, mRPA1;
polymerase (RNA) I polypeptide A (EC:2.7.7.6); K02999 DNA-directed
RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Length=1717
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/75 (58%), Positives = 58/75 (77%), Gaps = 1/75 (1%)
Query 177 VERQFHRSLAHAGECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINVA 236
++ ++ RSL GE VG +AAQSIGEP+TQMTLNTFHFAG G NVTLG+PRL+E++ VA
Sbjct 1203 LQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVA 1262
Query 237 K-TVKTPSLTVYLLD 250
+KTP ++V + D
Sbjct 1263 SANIKTPMMSVPVFD 1277
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 84/157 (53%), Gaps = 3/157 (1%)
Query 421 RTLYNETTGKFERVNNWVLDTDGCNLDEVLTCPRV-DSTRTTSNDITEIFDVLGIEAVRR 479
R L NETT + VL+T+G NL E+ + D R SNDI + + GIEA R
Sbjct 1558 RCLLNETTNS-KNEKELVLNTEGINLPELFKYSEILDLRRLYSNDIHAMANTYGIEAALR 1616
Query 480 ALLRELRAVISFDGSYVNYRHLAILCDTMTQKGYLMSITRHGINRVEKGPLKKCSFEETV 539
+ +E++ V + G V+ RHL+++ D M +G + R GI + PL++ +FE +
Sbjct 1617 VIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-QSSSSPLQQMTFETSF 1675
Query 540 EILMEAAVFAETDHLRGVTENIMLGQLCPLGTGDVDL 576
+ L +A + D L+ + +++G++ GTG +L
Sbjct 1676 QFLKQATMMGSHDELKSPSACLVVGKVVKGGTGLFEL 1712
> cel:Y48E1A.1 hypothetical protein; K02999 DNA-directed RNA polymerase
I subunit RPA1 [EC:2.7.7.6]
Length=1737
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 102/184 (55%), Gaps = 23/184 (12%)
Query 95 FPASVEQLRKQDPVAIAKSVQELLNEKLVVVKQTCKADTISAEVQENATIFMKAHLRTVL 154
F S+E+ R+Q I K E ++E+ TCK + ++ + F ++ V
Sbjct 1152 FELSLEE-REQYARGIPKKCPEAVDERF---NPTCKLGALPEKMLDEIEGFCTRRVKKVD 1207
Query 155 NS---RRLLEREQLGAKAVHWLLGEVERQFHRSLAHAGECVGAIAAQSIGEPATQMTLNT 211
+ + +L+R ++W + RSLA GE VG +AAQSIGEP+TQMTLNT
Sbjct 1208 DEEPPKEVLKR------TLYW-------KGMRSLADPGENVGLLAAQSIGEPSTQMTLNT 1254
Query 212 FHFAGVGSKNVTLGVPRLKE-LINVAKTVKTPSLTVYLLDEGAYDQERAKDVQTHLEHTT 270
FHFAG G NVTLG+PRL+E L+ +K++ TPS ++ ++ ++R ++ L+
Sbjct 1255 FHFAGRGEMNVTLGIPRLREILMTASKSIATPSASIAVI--AGTSRDRIDSIKRELDRVY 1312
Query 271 LEKV 274
L+++
Sbjct 1313 LKQL 1316
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 71/143 (49%), Gaps = 2/143 (1%)
Query 438 VLDTDGCNLDEVLTCPRV-DSTRTTSNDITEIFDVLGIEAVRRALLRELRAVISFDGSYV 496
+L T G NL V D SND+ I + G+EA +A+ E+ V + G V
Sbjct 1572 ILQTQGVNLAAFFKHADVLDVNSVYSNDLNLILENYGVEACSKAITTEMNNVFAVYGIEV 1631
Query 497 NYRHLAILCDTMTQKGYLMSITRHGINRVEKGPLKKCSFEETVEILMEAAVFAETDHLRG 556
+ RHL++ D MT G + R G PL+K +FE T+ L EA + E D++
Sbjct 1632 SKRHLSLTADYMTFTGQIQPFNR-GAMSSSSSPLQKMTFETTMAFLREALLHGEEDNVNS 1690
Query 557 VTENIMLGQLCPLGTGDVDLLID 579
+ +++G L GTG DLL+D
Sbjct 1691 PSARLVMGALPRGGTGSFDLLLD 1713
> xla:398274 polr1a; polymerase (RNA) I polypeptide A, 194kDa;
K02999 DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Length=1730
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 68/96 (70%), Gaps = 2/96 (2%)
Query 180 QFHRSLAHAGECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINVAKT- 238
++ R+L G+ VG +AAQSIGEP+TQMTLNTFHFAG G NVTLG+PRL+E++ VA +
Sbjct 1204 KWQRALCDPGDAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSN 1263
Query 239 VKTPSLTVYLLDEGAYDQERAKDVQTHLEHTTLEKV 274
+KTP ++V +L+ +RAK ++ L L +V
Sbjct 1264 IKTPMMSVPVLNTKK-AVKRAKQLKKRLTRVRLAEV 1298
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 85/157 (54%), Gaps = 3/157 (1%)
Query 421 RTLYNETTGKFERVNNWVLDTDGCNLDEVLTCPRV-DSTRTTSNDITEIFDVLGIEAVRR 479
R L NETT K + +L+T+G NL E+ + D TR SNDI I + GIEA R
Sbjct 1571 RCLLNETTNK-QGDKELILNTEGINLYELFKYSSILDITRLYSNDIHAIANTFGIEAALR 1629
Query 480 ALLRELRAVISFDGSYVNYRHLAILCDTMTQKGYLMSITRHGINRVEKGPLKKCSFEETV 539
+ +E++ V + G V+ RHL+++ D M +G + R G+ + P ++ +FE +
Sbjct 1630 VVEKEIKDVFAVYGIEVDPRHLSLVADYMCFEGTYRPLNRIGM-QSSSSPFQQMTFETSY 1688
Query 540 EILMEAAVFAETDHLRGVTENIMLGQLCPLGTGDVDL 576
+ L +A + D L+ + +++G++ GTG DL
Sbjct 1689 KFLKDATMNGARDDLQSPSACLVVGKVVKGGTGLFDL 1725
> sce:YOR341W RPA190, RRN1; A190 (EC:2.7.7.6); K02999 DNA-directed
RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Length=1664
Score = 92.0 bits (227), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 63/81 (77%), Gaps = 1/81 (1%)
Query 177 VERQFHRSLAHAGECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINVA 236
++ ++ RSL + GE VG IA+QS+GEP+TQMTLNTFHFAG G+ NVTLG+PRL+E++ A
Sbjct 1170 MQLKYMRSLINPGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTA 1229
Query 237 K-TVKTPSLTVYLLDEGAYDQ 256
+KTP +T+ + ++ + +Q
Sbjct 1230 SAAIKTPQMTLPIWNDVSDEQ 1250
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 72/141 (51%), Gaps = 2/141 (1%)
Query 438 VLDTDGCNLDEVLTCPR-VDSTRTTSNDITEIFDVLGIEAVRRALLRELRAVISFDGSYV 496
VL T+G N + +D TSND+ + G+EA R ++ E+ V S V
Sbjct 1518 VLVTEGVNFQAMWDQEAFIDVDGITSNDVAAVLKTYGVEAARNTIVNEINNVFSRYAISV 1577
Query 497 NYRHLAILCDTMTQKGYLMSITRHGINRVEKGPLKKCSFEETVEILMEAAVFAETDHLRG 556
++RHL ++ D MT++G ++ R G+ K S+E T + L +A + E + L
Sbjct 1578 SFRHLDLIADMMTRQGTYLAFNRQGM-ETSTSSFMKMSYETTCQFLTKAVLDNEREQLDS 1636
Query 557 VTENIMLGQLCPLGTGDVDLL 577
+ I++G+L +GTG D+L
Sbjct 1637 PSARIVVGKLNNVGTGSFDVL 1657
> dre:327078 polr1a, cb934, fa26a03, sb:cb935, wu:fa26a03; polymerase
(RNA) I polypeptide A; K02999 DNA-directed RNA polymerase
I subunit RPA1 [EC:2.7.7.6]
Length=1693
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 72/107 (67%), Gaps = 4/107 (3%)
Query 177 VERQFHRSLAHAGECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINVA 236
++ ++ R+L GE VG +AAQSIGEP+TQMTLNTFHFAG G NVTLG+PRL+E++ VA
Sbjct 1189 LQLKWQRALCDPGEAVGLVAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILLVA 1248
Query 237 KT-VKTPSLTV-YLLDEGAYDQERAKDVQTHLEHTTLEKVCTMAQVI 281
+ +KTP +++ ++++ A Q K ++ + L +V VI
Sbjct 1249 SSNIKTPMMSIPVVMNKKALKQ--VKTLRKKITRVCLSEVLHKVNVI 1293
Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 3/157 (1%)
Query 421 RTLYNETTGKFERVNNWVLDTDGCNLDEVLTCPRV-DSTRTTSNDITEIFDVLGIEAVRR 479
R L NE T K + +L+T+G N+ E+ + D R SN++ + GIE R
Sbjct 1534 RCLLNEVTRK-DGSKEIMLNTEGINIHEMFKYADILDLKRLYSNEVHAMASTYGIEVALR 1592
Query 480 ALLRELRAVISFDGSYVNYRHLAILCDTMTQKGYLMSITRHGINRVEKGPLKKCSFEETV 539
+ +E++ V + G V+ RHL+++ D M +G + R GI + PL++ +FE +
Sbjct 1593 VIEKEIKDVFAVYGIEVDPRHLSLVADYMCFEGVYKPLNRFGI-QSNSSPLQQMTFETSF 1651
Query 540 EILMEAAVFAETDHLRGVTENIMLGQLCPLGTGDVDL 576
+ L +A + D L + +++G++ GTG DL
Sbjct 1652 KFLKQATMLGSYDKLSSPSACLVVGKVVKGGTGIFDL 1688
> bbo:BBOV_IV009600 23.m06317; DNA directed RNA polymerase (EC:2.7.7.6);
K02999 DNA-directed RNA polymerase I subunit RPA1
[EC:2.7.7.6]
Length=2016
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Query 179 RQFHRSLAHAGECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINVAKT 238
R + RS GE VG IA QSIGEPATQMTLNTFH AG G+ NVTLG+PRL EL+ +
Sbjct 1387 RHYKRSQCEPGEAVGCIAGQSIGEPATQMTLNTFHLAGHGATNVTLGIPRLVELMQTTGS 1446
Query 239 VKTPSLTVYLLDEGAYDQERAKDVQ 263
TP + LL G D A + Q
Sbjct 1447 ASTPYFSAPLL--GDSDDNIAHNAQ 1469
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 3/138 (2%)
Query 437 WVLDTDGCNLDEV--LTCPRVDSTRTTSNDITEIFDVLGIEAVRRALLRELRAVISFDGS 494
+ L DG NL + L VD R NDI ++ GIEA R +++ EL+ V S G
Sbjct 1836 YKLHCDGTNLQRLFLLRDGLVDFNRLHVNDIATVYRYYGIEAARASIVSELQNVFSVYGI 1895
Query 495 YVNYRHLAILCDTMTQKGYLMSITRHGINRVEKGPLKKCSFEETVEILMEAAVFAETDHL 554
V+YRHL+++ D MT KG + + R+G+ R PL + SFE T++ +M+A D L
Sbjct 1896 NVDYRHLSLIADFMTNKGDIRTFNRYGMAR-HASPLLQMSFESTLKFIMDACERGGYDDL 1954
Query 555 RGVTENIMLGQLCPLGTG 572
I+ G+ LG G
Sbjct 1955 GSPAGAIVAGRPIRLGGG 1972
> cpv:cgd5_730 DNA-directed RNA polymerase I ; K02999 DNA-directed
RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Length=1805
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 81/162 (50%), Gaps = 24/162 (14%)
Query 180 QFHRSLAHAGECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINVAKTV 239
++ ++ GE VG +AAQSIGEPATQMTLNTFH AG G+ NVTLG+PRLKEL+
Sbjct 1569 KYMKTQISPGEAVGCLAAQSIGEPATQMTLNTFHLAGHGAANVTLGIPRLKELLQTGGDS 1628
Query 240 KTPSLTVYLLDEGAYDQERA----------KDVQTHLEHT-----------TLEKVCTMA 278
KTP + + LL + ++++ KD + E +E V +
Sbjct 1629 KTPYIFIPLLKDINSKKDKSSKFADEENDNKDFINYAEKVLDCFKSIPLSDIIENVGVES 1688
Query 279 QVIYDPDPTKTIVPQDKQWVSDY---YEFPDDEELPQSLGRW 317
++YD D + + +Y +F D E QSL +
Sbjct 1689 SIVYDEDGKFKSSHKKSAYCWNYEISIQFSDLEVFCQSLPHY 1730
> tgo:TGME49_044880 DNA-directed RNA polymerase I largest subunit,
putative (EC:2.7.7.49 2.7.7.6); K02999 DNA-directed RNA
polymerase I subunit RPA1 [EC:2.7.7.6]
Length=2768
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 49/68 (72%), Gaps = 0/68 (0%)
Query 181 FHRSLAHAGECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINVAKTVK 240
+H+ GE VG +AAQSIGEPATQMTLNTFH AG G+ NVT+G+PRL+EL+ K
Sbjct 1927 YHKCCMPPGEAVGCVAAQSIGEPATQMTLNTFHLAGHGAANVTMGIPRLRELLQQGAVTK 1986
Query 241 TPSLTVYL 248
TP L + L
Sbjct 1987 TPILYIPL 1994
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query 455 VDSTRTTSNDITEIFDVLGIEAVRRALLRELRAVISFDGSYVNYRHLAILCDTMTQKGYL 514
+D +ND+ + GIEA R L REL V S G V+YRHLA++ D MT G L
Sbjct 2523 IDHNGILTNDVRAVLKYYGIEAARVCLARELERVFSAYGIKVDYRHLALIADFMTHGGTL 2582
Query 515 MSITRHGINRVEKGPLKKCSFEETVEILMEAAVFAETDHLRGVTENIMLGQLCPLGT 571
R G+ P + S+E + + L EA A D L + ++++G +G+
Sbjct 2583 RPFNRLGMA-ASNAPFLQMSYETSFKFLTEACERAAVDSLSTPSGSLVVGAPSVIGS 2638
> tpv:TP01_0809 RNA polymerase large subunit; K02999 DNA-directed
RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Length=1996
Score = 85.5 bits (210), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 73/137 (53%), Gaps = 3/137 (2%)
Query 437 WVLDTDGCNLDEVLTCPR--VDSTRTTSNDITEIFDVLGIEAVRRALLRELRAVISFDGS 494
+ L DG NL + VD ND+ + GIEA R ++ EL+ V S G
Sbjct 1833 YTLHCDGTNLKRLFMLKDGIVDFNLIKMNDVATVLKYYGIEAARSCIVSELQKVFSVYGI 1892
Query 495 YVNYRHLAILCDTMTQKGYLMSITRHGINRVEKGPLKKCSFEETVEILMEAAVFAETDHL 554
VNYRHL ++ D MTQKG + + TR+G+ + PL + SFE T++ LM+A+ D+L
Sbjct 1893 KVNYRHLTLIADFMTQKGDVRTFTRYGMAK-HTSPLLQMSFESTMKFLMQASQRGAYDNL 1951
Query 555 RGVTENIMLGQLCPLGT 571
+ +M G+ +G+
Sbjct 1952 KSPAGGLMAGKPVHVGS 1968
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 52/83 (62%), Gaps = 4/83 (4%)
Query 181 FHRSLAHAGECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINVAKTVK 240
+ + GE VG IA QSIGEPATQMTLNTFH AG G+ NVTLG+PRL E++
Sbjct 1387 YEKCKCEPGEAVGCIAGQSIGEPATQMTLNTFHLAGHGAANVTLGIPRLIEILQNTSHCS 1446
Query 241 TPSLTVYLL----DEGAYDQERA 259
TP +V +L DE A + E A
Sbjct 1447 TPYFSVPILGKNEDEIAENAENA 1469
> pfa:PFE0465c RNA polymerase I; K02999 DNA-directed RNA polymerase
I subunit RPA1 [EC:2.7.7.6]
Length=2914
Score = 79.0 bits (193), Expect = 6e-14, Method: Composition-based stats.
Identities = 46/125 (36%), Positives = 71/125 (56%), Gaps = 7/125 (5%)
Query 177 VERQFHRSLAHAGECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINVA 236
++ +++ SL + GE +G + AQS GEPATQMTLNTFH A G++NVT+G+PRLKE+ +
Sbjct 2047 LKSKYYNSLCNPGESIGILVAQSFGEPATQMTLNTFHLA--GTENVTMGIPRLKEIFLTS 2104
Query 237 KTVKTPSLTVYL---LDEGAYDQERAKDVQTHLEHTTLE--KVCTMAQVIYDPDPTKTIV 291
K P + V + +D D + K+ T + L K + VIY + I+
Sbjct 2105 KLTSKPMIYVPIKLQVDNLKNDANKMKNYITSIADKILSSYKSIFLTDVIYGIGVDRKII 2164
Query 292 PQDKQ 296
++ Q
Sbjct 2165 LKENQ 2169
Score = 69.7 bits (169), Expect = 4e-11, Method: Composition-based stats.
Identities = 40/131 (30%), Positives = 66/131 (50%), Gaps = 3/131 (2%)
Query 455 VDSTRTTSNDITEIFDVLGIEAVRRALLRELRAVISFDGSYVNYRHLAILCDTMTQKGYL 514
+D T+ NDI I GIEA R + +EL+ V G +++RHL+ + D MT G L
Sbjct 2785 IDKTKLYCNDIYAIVKTYGIEAGRLCITKELKKVFDAYGIQIDFRHLSFISDFMTHTGDL 2844
Query 515 MSITRHGINRVEKGPLKKCSFEETVEILMEAAVFAETDHLRGVTENIMLGQLCPLGTGDV 574
+ RHG+ + K SFE L++ + D+L + ++ G+ +GT
Sbjct 2845 KAFNRHGLGYF-RNVFHKMSFECATNFLIQGCIHNSIDYLSTASSSLFFGKHIKVGTNLA 2903
Query 575 DLL--IDEEKL 583
D++ ID++ L
Sbjct 2904 DIVTCIDKQNL 2914
> eco:b3988 rpoC, ECK3979, JW3951, tabB; RNA polymerase, beta
prime subunit (EC:2.7.7.6); K03046 DNA-directed RNA polymerase
subunit beta' [EC:2.7.7.6]
Length=1407
Score = 55.5 bits (132), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 18/133 (13%)
Query 458 TRTTSNDITEIFDVLG-------IEAVRRALLRELRAVIS-----FDGSYVNYRHLAILC 505
TR N++ +++ + G IE + R +LR+ V + +G V Y + I
Sbjct 1230 TRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIAN 1289
Query 506 DTMTQKGYLMSITRHGINRVEKGPL------KKCSFEETVEILMEAAVFAETDHLRGVTE 559
+ G + + + + K L SF+ET +L EAAV + D LRG+ E
Sbjct 1290 RELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKE 1349
Query 560 NIMLGQLCPLGTG 572
N+++G+L P GTG
Sbjct 1350 NVIVGRLIPAGTG 1362
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 26/41 (63%), Gaps = 5/41 (12%)
Query 181 FHRSLAHA-----GECVGAIAAQSIGEPATQMTLNTFHFAG 216
+ R LA GE +G IAAQSIGEP TQ+T+ TFH G
Sbjct 899 YGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGG 939
> ath:ArthCp012 rpoC2; RNA polymerase beta'' chain; K03046 DNA-directed
RNA polymerase subunit beta' [EC:2.7.7.6]
Length=1376
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 24/36 (66%), Gaps = 0/36 (0%)
Query 182 HRSLAHAGECVGAIAAQSIGEPATQMTLNTFHFAGV 217
H L GE VG IA QSIGEP TQ+TL TFH GV
Sbjct 310 HGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGV 345
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query 504 LCDTMTQKGYLMSITRHGINRVEKGPLKKCSFEETVEILMEAAVFAETDHLRGVTENIML 563
L + + + L+ ITR +N + + + SF+ET +L +AA+ D L+G+ EN++L
Sbjct 1256 LEEAICYRAVLLGITRASLN--TQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVL 1313
Query 564 GQLCPLGTG 572
G + P GTG
Sbjct 1314 GGVIPAGTG 1322
> ath:AT1G63020 NRPD1A; NRPD1A (NUCLEAR RNA POLYMERASE D 1A);
DNA binding / DNA-directed RNA polymerase
Length=1453
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 82/429 (19%), Positives = 165/429 (38%), Gaps = 86/429 (20%)
Query 189 GECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINV-----AKTVKTPS 243
GE +G+++A ++ E A ++ + L L L NV K + +
Sbjct 874 GEALGSLSACALSEAA---------YSALDQPISLLETSPLLNLKNVLECGSKKGQREQT 924
Query 244 LTVYL---LDEGAYDQERAK-DVQTHLEHTTLEKVCTMAQVIYDPDPTKTIVPQDKQWVS 299
+++YL L + + E +++ HLE + ++ + + +I+ P + T VP
Sbjct 925 MSLYLSEYLSKKKHGFEYGSLEIKNHLEKLSFSEIVSTSMIIFSPS-SNTKVP------- 976
Query 300 DYYEFPDDEELPQSLGRWLLRVQLDSKVMIDKKLPMKEIGETIYREFD--NDELDCIWTD 357
L W+ + KV+ K+L + + ++ ++ N EL D
Sbjct 977 --------------LSPWVCHFHISEKVLKRKQLSAESVVSSLNEQYKSRNRELKLDIVD 1022
Query 358 DNSDELVLRIRIKKHGQEQDPNSDD-------------QSSEIENRFLQKLMLHCLVGIT 404
L I+ H D D + S +E ++ +++ L+
Sbjct 1023 -------LDIQNTNHCSSDDQAMKDDNVCITVTVVEASKHSVLELDAIRLVLIPFLLDSP 1075
Query 405 LRGVSRITKVYM-------------REEARTLYNETT--GKFERVNNWVLDTDGCNLDEV 449
++G I KV + A LY + T G + N W + C +
Sbjct 1076 VKGDQGIKKVNILWTDRPKAPKRNGNHLAGELYLKVTMYGDRGKRNCWTALLETC----L 1131
Query 450 LTCPRVDSTRTTSNDITEIFDVLGIEAVRRALLRELRAVISFDGSYVNYRHLAILCDTMT 509
+D R+ ++I + V GI+A R + L + +S G + HL ++ D+++
Sbjct 1132 PIMDMIDWGRSHPDNIRQCCSVYGIDAGRSIFVANLESAVSDTGKEILREHLLLVADSLS 1191
Query 510 QKGYLMSITRHGINRVEK-----GPLKKCSFEETVEILMEAAVFAETDHLRGVTENIMLG 564
G +++ G ++ + P + F + ++AA D L+G + + G
Sbjct 1192 VTGEFVALNAKGWSKQRQVESTPAPFTQACFSSPSQCFLKAAKEGVRDDLQGSIDALAWG 1251
Query 565 QLCPLGTGD 573
++ GTGD
Sbjct 1252 KVPGFGTGD 1260
> bbo:BBOV_V000110 rpoC2-N-terminal; K03046 DNA-directed RNA polymerase
subunit beta' [EC:2.7.7.6]
Length=355
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 25/32 (78%), Gaps = 0/32 (0%)
Query 182 HRSLAHAGECVGAIAAQSIGEPATQMTLNTFH 213
++ ++ +G C G I+AQ++GEP+TQM L TFH
Sbjct 208 YKDISLSGYCKGTISAQALGEPSTQMLLRTFH 239
> tgo:TGME49_100690 RNA polymerase Rpb1, domain 5 family protein
(EC:2.7.7.6)
Length=357
Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 0/30 (0%)
Query 190 ECVGAIAAQSIGEPATQMTLNTFHFAGVGS 219
+ +G + +SIGEP TQMTL TFH G+ S
Sbjct 169 QSMGVLIGESIGEPVTQMTLRTFHTGGISS 198
> tpv:TP05_0042 DNA-directed RNA polymerase subunit beta'' (EC:2.7.7.6);
K03046 DNA-directed RNA polymerase subunit beta'
[EC:2.7.7.6]
Length=363
Score = 40.8 bits (94), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 0/32 (0%)
Query 189 GECVGAIAAQSIGEPATQMTLNTFHFAGVGSK 220
G G I+ Q++GEP+TQM L TFH G G K
Sbjct 217 GYNKGIISGQALGEPSTQMLLRTFHLGGGGLK 248
> dre:260407 tp63, DNp63, MGC192897, id:ibd3516, p63, tp73l, wu:fc89f04,
wu:fk85h07, wu:fk88b02; tumor protein p63; K10149
tumor protein p73-like
Length=576
Score = 35.0 bits (79), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query 572 GDVDLLIDEEKLKDAHRAVEPQQDLALEGLASPGGADGMSPDGSGTPSPHNVTSVFSPMP 631
G + + KL + + PQQ AL PGG M+P G P P N T + S P
Sbjct 357 GSSSPTLGKNKLPSVSQLINPQQRNALTPSGMPGGLTDMTPPMMGGPVPMN-TDLSSLSP 415
Query 632 FSTVYSSFAQSPSNPLSPTSP 652
+ + S PS+ +P P
Sbjct 416 NNPLQSQLQMVPSSHCTPPPP 436
> cel:Y54E10A.9 vbh-1; Vasa- and Belle-like Helicase family member
(vbh-1); K11594 ATP-dependent RNA helicase [EC:3.6.4.13]
Length=641
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 16/151 (10%)
Query 76 VKQHIPINIMRLVEFAKAQFPASVEQLRK---QD-----PVAIAKSVQELLNEKLVVV-- 125
V Q +P R A FP ++ L K +D V S E + ++L+ V
Sbjct 303 VGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGSTSENIEQRLLWVNE 362
Query 126 --KQTCKADTISAEVQENATIFMKAHLRTVLNSRRLLEREQLGAKAVHWLLGEVERQFHR 183
K++ + + E EN + R L R+Q+ + ++H L ++ER+ +
Sbjct 363 MEKRSNLMEILMNEHSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERNL 422
Query 184 SLAHAGEC----VGAIAAQSIGEPATQMTLN 210
L +G+C A+AA+ + P + +N
Sbjct 423 ELFRSGQCPILVATAVAARGLDIPNVRHVIN 453
> xla:397920 numa; nuclear/mitotic apparatus protein
Length=2253
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
Query 90 FAKAQFPASVEQLRKQDPVAIAKSVQELLNEKLVVVKQTCKADTISAEVQENATIFMKAH 149
+ KA+F A V+ L++Q+ IA EL N VV ++ C+++ +S EV+ H
Sbjct 948 YKKAEFEAMVKVLKEQNSERIASLESELKNSLAVVKERKCESEKLSGEVE---------H 998
Query 150 LRTVLNSRRLLEREQLGAKAV 170
L+ L+ +E L K +
Sbjct 999 LKRQLDDSSQKHKEALAQKNI 1019
> cpv:cgd6_3640 protein disulfide isomerase ; secreted protein
with thioredoxin, signal peptide plus ER retention motif
Length=575
Score = 33.1 bits (74), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query 8 MQMDSEKIRRVYKHHFDQESYGKGWILDEELRTRLSVDFAAQQVLEDEFETIKEDKLRLC 67
+ M EKI VY F ++ K ++ DEE+ ++ F +VLE + ED +
Sbjct 508 IDMQIEKIPLVYYFPFGEDKVSKMFLYDEEITSKTVTTFITDRVLE-----VSEDNDQAE 562
Query 68 KTIFPDGEVKQHI 80
+ I PD +++ +
Sbjct 563 QNISPDSQIRDEL 575
Lambda K H
0.317 0.134 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 33435554740
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
Posted date: Sep 17, 2011 2:57 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40