bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
164,496 sequences; 82,071,388 total letters
Query= Eten_0155_orf3
Length=372
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_044880 DNA-directed RNA polymerase I largest subuni... 310 5e-84
bbo:BBOV_IV009600 23.m06317; DNA directed RNA polymerase (EC:2... 191 3e-48
tpv:TP01_0809 RNA polymerase large subunit; K02999 DNA-directe... 177 5e-44
pfa:PFE0465c RNA polymerase I; K02999 DNA-directed RNA polymer... 135 2e-31
xla:398274 polr1a; polymerase (RNA) I polypeptide A, 194kDa; K... 117 6e-26
mmu:20019 Polr1a, 194kDa, 3010014K16Rik, RPA194, Rpo1-4, mRPA1... 116 1e-25
hsa:25885 POLR1A, A190, DKFZp586M0122, FLJ21915, MGC87965, RPA... 109 2e-23
dre:327078 polr1a, cb934, fa26a03, sb:cb935, wu:fa26a03; polym... 108 3e-23
sce:YOR341W RPA190, RRN1; A190 (EC:2.7.7.6); K02999 DNA-direct... 106 1e-22
ath:AT3G57660 NRPA1; NRPA1; DNA binding / DNA-directed RNA pol... 102 3e-21
cel:Y48E1A.1 hypothetical protein; K02999 DNA-directed RNA pol... 97.1 1e-19
tpv:TP03_0185 DNA-directed RNA polymerase II largest subunit (... 68.9 3e-11
tpv:TP04_0648 DNA-directed RNA polymerase III largest subunit ... 67.4 9e-11
tgo:TGME49_106290 DNA-directed RNA polymerase III largest subu... 66.2 2e-10
cel:C42D4.8 rpc-1; RNA Polymerase, Class III (C) family member... 65.5 4e-10
sce:YDL140C RPO21, RPB1, RPB220, SUA8; B220 (EC:2.7.7.6); K030... 64.3 7e-10
pfa:PF13_0150 DNA-directed RNA polymerase 3 largest subunit (E... 64.3 7e-10
ath:AT5G60040 NRPC1; NRPC1; DNA binding / DNA-directed RNA pol... 64.3 7e-10
pfa:PFC0805w DNA-directed RNA polymerase II, putative; K03006 ... 63.9 8e-10
tgo:TGME49_025260 DNA-directed RNA polymerase II largest subun... 63.5 1e-09
cpv:cgd6_3290 DNA-directed RNA polymerase III C1 subunit ; K03... 62.8 2e-09
bbo:BBOV_III007400 17.m07648; RNA polymerase Rpb1, domain cont... 62.4 2e-09
ath:AT4G35800 NRPB1; NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); ... 62.4 3e-09
bbo:BBOV_I003360 19.m02399; DNA-directed RNA polymerase II lar... 62.0 3e-09
dre:553347 polr2a, im:7136071; polymerase (RNA) II (DNA direct... 61.6 5e-09
mmu:20020 Polr2a, 220kDa, Rpb1, Rpo2-1; polymerase (RNA) II (D... 61.2 7e-09
hsa:5430 POLR2A, MGC75453, POLR2, POLRA, RPB1, RPBh1, RPO2, RP... 60.8 8e-09
cpv:cgd3_2620 DNA-directed RNA polymerase,possible RNA polymer... 57.8 7e-08
sce:YOR116C RPO31, RPC1, RPC160; C160 (EC:2.7.7.6); K03018 DNA... 57.4 8e-08
cel:F36A4.7 ama-1; AMAnitin resistant family member (ama-1); K... 56.6 1e-07
hsa:11128 POLR3A, RPC1, RPC155, hRPC155; polymerase (RNA) III ... 55.1 4e-07
mmu:218832 Polr3a, 9330175N20Rik, BC053071, MGC62420, RPC1, RP... 55.1 4e-07
pfa:PF13_0198 PfRh2a; reticulocyte binding protein 2 homolog A... 45.4 4e-04
> tgo:TGME49_044880 DNA-directed RNA polymerase I largest subunit,
putative (EC:2.7.7.49 2.7.7.6); K02999 DNA-directed RNA
polymerase I subunit RPA1 [EC:2.7.7.6]
Length=2768
Score = 310 bits (795), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 162/368 (44%), Positives = 232/368 (63%), Gaps = 8/368 (2%)
Query 1 GTREDEEQQQQQQQQQQQQQESESDSSSEEEEANVKQEKGEAAKVKREI--KEEEFEANK 58
G R D + + +Q E ES +S E+EEA E + + EE +++
Sbjct 2286 GQRADSARGDATHIKVEQTSEDESSASCEDEEATSSDEDDDDPEDDGHTGKAEESTVSSE 2345
Query 59 QPIKKIKKEQQQQQQQQQQQPQQQQLLDLADVLRGKRFDRTLGLFVDAKPSKANPETLNP 118
+P K K ++ + LL A +++G+ FD LF + + + P
Sbjct 2346 KPAKGEVKRDRRTLDAAFESMFSPLLLSFARLVKGETFDMNTHLFFPQDKKQCSRASKTP 2405
Query 119 KPLSSEYPPPAPFEADAVWSSGASFKKLAQLDMESATILKDIKVCRKTWRIVVKFGWPFD 178
+ PAP E+D +W+ G +K + E A+IL ++ VC +TWRI++KFGWPF+
Sbjct 2406 LAV------PAPVESDGLWADGRKYKGFVLITREVASILHEVFVCPRTWRIILKFGWPFE 2459
Query 179 KCPYRLELLPIVKGLVEKVTLQEPQGVSNPRIVQGSGCSTGSPMELHCSGSNLQWLHRLK 238
+CPYRLELLP++ GL++K +QEP+GV+ PRIVQG GC T +E+ C GSN W+HR+K
Sbjct 2460 RCPYRLELLPLLMGLLKKSKMQEPEGVAAPRIVQGEGCVTKQKVEIQCEGSNFGWIHRMK 2519
Query 239 ETAVDHSKLETNDVLAMLQHYGIEAARALYLKEFSRVFAAYGIKVHSSHLGLIADFVTRD 298
+ A+DH+ + TNDV A+L++YGIEAAR +E RVF+AYGIKV HL LIADF+T
Sbjct 2520 DEAIDHNGILTNDVRAVLKYYGIEAARVCLARELERVFSAYGIKVDYRHLALIADFMTHG 2579
Query 299 GAIIPFNRLGIQHCDSPFLQMAFETSFRFLTEACERSAVDNLKTPSAALIVGSPAVIGSH 358
G + PFNRLG+ ++PFLQM++ETSF+FLTEACER+AVD+L TPS +L+VG+P+VIGS
Sbjct 2580 GTLRPFNRLGMAASNAPFLQMSYETSFKFLTEACERAAVDSLSTPSGSLVVGAPSVIGSQ 2639
Query 359 QSQLLAVL 366
Q Q+ L
Sbjct 2640 QHQVFTQL 2647
> bbo:BBOV_IV009600 23.m06317; DNA directed RNA polymerase (EC:2.7.7.6);
K02999 DNA-directed RNA polymerase I subunit RPA1
[EC:2.7.7.6]
Length=2016
Score = 191 bits (486), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 93/213 (43%), Positives = 128/213 (60%), Gaps = 10/213 (4%)
Query 158 KDIKVCRKTWRIVVKFGWPFDKCPYRLELLPIVKGLVEKVTLQEPQGVSNPRIVQGSGCS 217
K ++ C T R+V+KFGWPF KCPY L LL +++ L+ GV PR+V C
Sbjct 1773 KSLRYCETTGRMVLKFGWPFTKCPYHLNLLQLLRQETSSQILRNSPGVKQPRVV----CH 1828
Query 218 T---GSPMELHCSGSNLQWLHRLKETAVDHSKLETNDVLAMLQHYGIEAARALYLKEFSR 274
T G +LHC G+NLQ L L++ VD ++L ND+ + ++YGIEAARA + E
Sbjct 1829 TDNNGEVYKLHCDGTNLQRLFLLRDGLVDFNRLHVNDIATVYRYYGIEAARASIVSELQN 1888
Query 275 VFAAYGIKVHSSHLGLIADFVTRDGAIIPFNRLGIQHCDSPFLQMAFETSFRFLTEACER 334
VF+ YGI V HL LIADF+T G I FNR G+ SP LQM+FE++ +F+ +ACER
Sbjct 1889 VFSVYGINVDYRHLSLIADFMTNKGDIRTFNRYGMARHASPLLQMSFESTLKFIMDACER 1948
Query 335 SAVDNLKTPSAALIVGSPAVIGSHQSQLLAVLP 367
D+L +P+ A++ G P +G L VLP
Sbjct 1949 GGYDDLGSPAGAIVAGRPIRLG---GGLCKVLP 1978
> tpv:TP01_0809 RNA polymerase large subunit; K02999 DNA-directed
RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Length=1996
Score = 177 bits (450), Expect = 5e-44, Method: Composition-based stats.
Identities = 95/248 (38%), Positives = 150/248 (60%), Gaps = 6/248 (2%)
Query 121 LSSEYPPPAPFEADAVWSSG--ASFKKLAQLDMESATILKDIKVCRKTWRIVVKFGWPFD 178
LSS P ++ SSG + ++L ++ + +K ++ +T +V+KFGWP
Sbjct 1734 LSSPSASPTRIRSE---SSGIKSGNQRLFSINRKVFQFVKSLEFSEETSTMVLKFGWPVL 1790
Query 179 KCPYRLELLPIVKGLVEKVTLQEPQGVSNPRIVQGSGCSTGSPMELHCSGSNLQWLHRLK 238
KCPY L+LLP++K + ++ L++ G+ RI + LHC G+NL+ L LK
Sbjct 1791 KCPYFLDLLPLLKQEISQLVLRDSYGIRQSRI-EFQTVDDKEEYTLHCDGTNLKRLFMLK 1849
Query 239 ETAVDHSKLETNDVLAMLQHYGIEAARALYLKEFSRVFAAYGIKVHSSHLGLIADFVTRD 298
+ VD + ++ NDV +L++YGIEAAR+ + E +VF+ YGIKV+ HL LIADF+T+
Sbjct 1850 DGIVDFNLIKMNDVATVLKYYGIEAARSCIVSELQKVFSVYGIKVNYRHLTLIADFMTQK 1909
Query 299 GAIIPFNRLGIQHCDSPFLQMAFETSFRFLTEACERSAVDNLKTPSAALIVGSPAVIGSH 358
G + F R G+ SP LQM+FE++ +FL +A +R A DNLK+P+ L+ G P +GS
Sbjct 1910 GDVRTFTRYGMAKHTSPLLQMSFESTMKFLMQASQRGAYDNLKSPAGGLMAGKPVHVGSS 1969
Query 359 QSQLLAVL 366
+L+ V+
Sbjct 1970 LCRLMHVV 1977
> pfa:PFE0465c RNA polymerase I; K02999 DNA-directed RNA polymerase
I subunit RPA1 [EC:2.7.7.6]
Length=2914
Score = 135 bits (341), Expect = 2e-31, Method: Composition-based stats.
Identities = 68/211 (32%), Positives = 122/211 (57%), Gaps = 1/211 (0%)
Query 157 LKDIKVCRKTWRIVVKFGWPFDKCPYRLELLPIVKGLVEKVTLQEPQGVSNPRIVQGSGC 216
+K+I TW + + GW + PY ++ L +K + K L + + ++NP+I++G
Sbjct 2699 IKNIHFSPVTWILKLNIGWDINFFPYPIDFLNHIKSEINKEVLFKVKDLNNPKILKGKDI 2758
Query 217 S-TGSPMELHCSGSNLQWLHRLKETAVDHSKLETNDVLAMLQHYGIEAARALYLKEFSRV 275
+ +G+ EL G N+ L+ +K+ +D +KL ND+ A+++ YGIEA R KE +V
Sbjct 2759 THSGAEYELQIEGKNIYKLYNIKDKYIDKTKLYCNDIYAIVKTYGIEAGRLCITKELKKV 2818
Query 276 FAAYGIKVHSSHLGLIADFVTRDGAIIPFNRLGIQHCDSPFLQMAFETSFRFLTEACERS 335
F AYGI++ HL I+DF+T G + FNR G+ + + F +M+FE + FL + C +
Sbjct 2819 FDAYGIQIDFRHLSFISDFMTHTGDLKAFNRHGLGYFRNVFHKMSFECATNFLIQGCIHN 2878
Query 336 AVDNLKTPSAALIVGSPAVIGSHQSQLLAVL 366
++D L T S++L G +G++ + ++ +
Sbjct 2879 SIDYLSTASSSLFFGKHIKVGTNLADIVTCI 2909
> xla:398274 polr1a; polymerase (RNA) I polypeptide A, 194kDa;
K02999 DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Length=1730
Score = 117 bits (294), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 96/167 (57%), Gaps = 1/167 (0%)
Query 184 LELLPIVKGLVEKVTLQEPQGVSNPRIVQGSGCSTGSPMELHCSGSNLQWLHRLKETAVD 243
++ +V L V + E G++ + + + + L+ G NL L + + +D
Sbjct 1548 FDICSLVSSLAHNVIVHETSGITRCLLNETTNKQGDKELILNTEGINLYELFKY-SSILD 1606
Query 244 HSKLETNDVLAMLQHYGIEAARALYLKEFSRVFAAYGIKVHSSHLGLIADFVTRDGAIIP 303
++L +ND+ A+ +GIEAA + KE VFA YGI+V HL L+AD++ +G P
Sbjct 1607 ITRLYSNDIHAIANTFGIEAALRVVEKEIKDVFAVYGIEVDPRHLSLVADYMCFEGTYRP 1666
Query 304 FNRLGIQHCDSPFLQMAFETSFRFLTEACERSAVDNLKTPSAALIVG 350
NR+G+Q SPF QM FETS++FL +A A D+L++PSA L+VG
Sbjct 1667 LNRIGMQSSSSPFQQMTFETSYKFLKDATMNGARDDLQSPSACLVVG 1713
> mmu:20019 Polr1a, 194kDa, 3010014K16Rik, RPA194, Rpo1-4, mRPA1;
polymerase (RNA) I polypeptide A (EC:2.7.7.6); K02999 DNA-directed
RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Length=1717
Score = 116 bits (291), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 91/167 (54%), Gaps = 1/167 (0%)
Query 184 LELLPIVKGLVEKVTLQEPQGVSNPRIVQGSGCSTGSPMELHCSGSNLQWLHRLKETAVD 243
++ +V L K + +G++ + + + + L+ G NL L + E +D
Sbjct 1535 FDMSSLVVSLAHKAIVYTTKGITRCLLNETTNSKNEKELVLNTEGINLPELFKYSEI-LD 1593
Query 244 HSKLETNDVLAMLQHYGIEAARALYLKEFSRVFAAYGIKVHSSHLGLIADFVTRDGAIIP 303
+L +ND+ AM YGIEAA + KE VFA YGI V HL L+AD++ +G P
Sbjct 1594 LRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKP 1653
Query 304 FNRLGIQHCDSPFLQMAFETSFRFLTEACERSAVDNLKTPSAALIVG 350
NR GIQ SP QM FETSF+FL +A + D LK+PSA L+VG
Sbjct 1654 LNRFGIQSSSSPLQQMTFETSFQFLKQATMMGSHDELKSPSACLVVG 1700
> hsa:25885 POLR1A, A190, DKFZp586M0122, FLJ21915, MGC87965, RPA1,
RPA194, RPO1-4, RPO14; polymerase (RNA) I polypeptide A,
194kDa (EC:2.7.7.6); K02999 DNA-directed RNA polymerase I
subunit RPA1 [EC:2.7.7.6]
Length=1720
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 88/162 (54%), Gaps = 1/162 (0%)
Query 189 IVKGLVEKVTLQEPQGVSNPRIVQGSGCSTGSPMELHCSGSNLQWLHRLKETAVDHSKLE 248
+V L + +G++ + + + + L+ G NL L + E +D +L
Sbjct 1543 LVVSLAHGAVIYATKGITRCLLNETTNNKNEKELVLNTEGINLPELFKYAEV-LDLRRLY 1601
Query 249 TNDVLAMLQHYGIEAARALYLKEFSRVFAAYGIKVHSSHLGLIADFVTRDGAIIPFNRLG 308
+ND+ A+ YGIEAA + KE VFA YGI V HL L+AD++ +G P NR G
Sbjct 1602 SNDIHAIANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFG 1661
Query 309 IQHCDSPFLQMAFETSFRFLTEACERSAVDNLKTPSAALIVG 350
I+ SP QM FETSF+FL +A + D L++PSA L+VG
Sbjct 1662 IRSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVG 1703
> dre:327078 polr1a, cb934, fa26a03, sb:cb935, wu:fa26a03; polymerase
(RNA) I polypeptide A; K02999 DNA-directed RNA polymerase
I subunit RPA1 [EC:2.7.7.6]
Length=1693
Score = 108 bits (271), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 90/167 (53%), Gaps = 1/167 (0%)
Query 184 LELLPIVKGLVEKVTLQEPQGVSNPRIVQGSGCSTGSPMELHCSGSNLQWLHRLKETAVD 243
+L +V + + E +G++ + + + + L+ G N+ + + + +D
Sbjct 1511 FDLTSVVVKQAQNAVIMETKGITRCLLNEVTRKDGSKEIMLNTEGINIHEMFKYADI-LD 1569
Query 244 HSKLETNDVLAMLQHYGIEAARALYLKEFSRVFAAYGIKVHSSHLGLIADFVTRDGAIIP 303
+L +N+V AM YGIE A + KE VFA YGI+V HL L+AD++ +G P
Sbjct 1570 LKRLYSNEVHAMASTYGIEVALRVIEKEIKDVFAVYGIEVDPRHLSLVADYMCFEGVYKP 1629
Query 304 FNRLGIQHCDSPFLQMAFETSFRFLTEACERSAVDNLKTPSAALIVG 350
NR GIQ SP QM FETSF+FL +A + D L +PSA L+VG
Sbjct 1630 LNRFGIQSNSSPLQQMTFETSFKFLKQATMLGSYDKLSSPSACLVVG 1676
> sce:YOR341W RPA190, RRN1; A190 (EC:2.7.7.6); K02999 DNA-directed
RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Length=1664
Score = 106 bits (265), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 87/145 (60%), Gaps = 1/145 (0%)
Query 224 LHCSGSNLQWLHRLKETAVDHSKLETNDVLAMLQHYGIEAARALYLKEFSRVFAAYGIKV 283
L G N Q + +E +D + +NDV A+L+ YG+EAAR + E + VF+ Y I V
Sbjct 1519 LVTEGVNFQAMWD-QEAFIDVDGITSNDVAAVLKTYGVEAARNTIVNEINNVFSRYAISV 1577
Query 284 HSSHLGLIADFVTRDGAIIPFNRLGIQHCDSPFLQMAFETSFRFLTEACERSAVDNLKTP 343
HL LIAD +TR G + FNR G++ S F++M++ET+ +FLT+A + + L +P
Sbjct 1578 SFRHLDLIADMMTRQGTYLAFNRQGMETSTSSFMKMSYETTCQFLTKAVLDNEREQLDSP 1637
Query 344 SAALIVGSPAVIGSHQSQLLAVLPD 368
SA ++VG +G+ +LA +P+
Sbjct 1638 SARIVVGKLNNVGTGSFDVLAKVPN 1662
> ath:AT3G57660 NRPA1; NRPA1; DNA binding / DNA-directed RNA polymerase/
zinc ion binding; K02999 DNA-directed RNA polymerase
I subunit RPA1 [EC:2.7.7.6]
Length=1670
Score = 102 bits (253), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 79/135 (58%), Gaps = 2/135 (1%)
Query 224 LHCSGSNLQWLHRLKETAVDHSKLETNDVLAMLQHYGIEAARALYLKEFSRVFAAYGIKV 283
LH SG + L ++ +D L +N + ML +G+EAAR ++E + VF +YGI V
Sbjct 1526 LHASGVDFPALWEFQD-KLDVRYLYSNSIHDMLNIFGVEAARETIIREINHVFKSYGISV 1584
Query 284 HSSHLGLIADFVTRDGAIIPFNRL-GIQHCDSPFLQMAFETSFRFLTEACERSAVDNLKT 342
HL LIAD++T G P +R+ GI SPF +M FET+ +F+ +A D L+T
Sbjct 1585 SIRHLNLIADYMTFSGGYRPMSRMGGIAESTSPFCRMTFETATKFIVQAATYGEKDTLET 1644
Query 343 PSAALIVGSPAVIGS 357
PSA + +G PA+ G+
Sbjct 1645 PSARICLGLPALSGT 1659
> cel:Y48E1A.1 hypothetical protein; K02999 DNA-directed RNA polymerase
I subunit RPA1 [EC:2.7.7.6]
Length=1737
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 95/182 (52%), Gaps = 4/182 (2%)
Query 183 RLELLPIVKGLVEKVTLQEPQGVSNPRIVQGSGCSTGSPME-LHCSGSNLQWLHRLKETA 241
++++ IV+ VE + + G+ R V+ + G M L G NL + +
Sbjct 1533 KMDVSSIVEKEVELFIVHQTPGIE--RCVETTEQKNGKEMTILQTQGVNLAAFFKHADV- 1589
Query 242 VDHSKLETNDVLAMLQHYGIEAARALYLKEFSRVFAAYGIKVHSSHLGLIADFVTRDGAI 301
+D + + +ND+ +L++YG+EA E + VFA YGI+V HL L AD++T G I
Sbjct 1590 LDVNSVYSNDLNLILENYGVEACSKAITTEMNNVFAVYGIEVSKRHLSLTADYMTFTGQI 1649
Query 302 IPFNRLGIQHCDSPFLQMAFETSFRFLTEACERSAVDNLKTPSAALIVGSPAVIGSHQSQ 361
PFNR + SP +M FET+ FL EA DN+ +PSA L++G+ G+
Sbjct 1650 QPFNRGAMSSSSSPLQKMTFETTMAFLREALLHGEEDNVNSPSARLVMGALPRGGTGSFD 1709
Query 362 LL 363
LL
Sbjct 1710 LL 1711
> tpv:TP03_0185 DNA-directed RNA polymerase II largest subunit
(EC:2.7.7.6); K03006 DNA-directed RNA polymerase II subunit
RPB1 [EC:2.7.7.6]
Length=1681
Score = 68.9 bits (167), Expect = 3e-11, Method: Composition-based stats.
Identities = 46/135 (34%), Positives = 70/135 (51%), Gaps = 3/135 (2%)
Query 224 LHCSGSNLQWLHRLKETAVDHSKLETNDVLAMLQHYGIEAARALYLKEFSRVFAAYGIKV 283
L G NL+ + L T VD++K +NDV + +GIEAAR L+E V + G V
Sbjct 1320 LDTDGCNLESV--LPITCVDYTKTFSNDVSEIFHVFGIEAARRALLREIRAVISFDGAYV 1377
Query 284 HSSHLGLIADFVTRDGAIIPFNRLGIQHCD-SPFLQMAFETSFRFLTEACERSAVDNLKT 342
+ HL L+ D +T+ G ++ R GI D P ++ +FE + L A VD+LK
Sbjct 1378 NYRHLSLLCDIMTQKGYLMSITRHGINRADRGPLIKCSFEETLETLLTAAVFGEVDHLKG 1437
Query 343 PSAALIVGSPAVIGS 357
+ +IVG + G+
Sbjct 1438 VTENVIVGQLSPYGT 1452
> tpv:TP04_0648 DNA-directed RNA polymerase III largest subunit
(EC:2.7.7.6); K03018 DNA-directed RNA polymerase III subunit
RPC1 [EC:2.7.7.6]
Length=1617
Score = 67.4 bits (163), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 1/124 (0%)
Query 241 AVDHSKLETNDVLAMLQHYGIEAARALYLKEFSRVFAAYGIKVHSSHLGLIADFVTRDGA 300
V S +++N V + + GIEAAR++ + E R AY I + ++ L+ D +T G
Sbjct 1491 GVMSSAVKSNHVAEVAKVLGIEAARSVIISEIQRCMDAYSIDIDCRYMKLLGDVMTFRGE 1550
Query 301 IIPFNRLGIQHCDSPFLQMA-FETSFRFLTEACERSAVDNLKTPSAALIVGSPAVIGSHQ 359
++ NR GIQ S L +A FE + L EA D +K S +I+G P +G+
Sbjct 1551 VVGINRFGIQKMRSSALMLASFEETNDHLLEAALHHRRDPIKGVSECIIMGKPISLGTGS 1610
Query 360 SQLL 363
+L
Sbjct 1611 FDIL 1614
> tgo:TGME49_106290 DNA-directed RNA polymerase III largest subunit,
putative (EC:2.7.7.6); K03018 DNA-directed RNA polymerase
III subunit RPC1 [EC:2.7.7.6]
Length=1746
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Query 249 TNDVLAMLQHYGIEAARALYLKEFSRVFAAYGIKVHSSHLGLIADFVTRDGAIIPFNRLG 308
+N V+ + Q GIEAARA+ + E + AY + + H+ L+ D +T G ++ NR G
Sbjct 1604 SNHVMEVAQILGIEAARAVIISEIRKCMDAYSMDIDCRHMTLLGDVMTFRGEVLGINRFG 1663
Query 309 IQHCDSPFLQMA-FETSFRFLTEACERSAVDNLKTPSAALIVGSPAVIGSHQSQLL 363
IQ + L +A FE + L EA D +K S +I+G +G+ LL
Sbjct 1664 IQKMRASTLMLASFEETNEHLFEAAVHHRADPVKGVSECIIMGKQVSLGTGSFDLL 1719
> cel:C42D4.8 rpc-1; RNA Polymerase, Class III (C) family member
(rpc-1); K03018 DNA-directed RNA polymerase III subunit RPC1
[EC:2.7.7.6]
Length=1400
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 1/128 (0%)
Query 237 LKETAVDHSKLETNDVLAMLQHYGIEAARALYLKEFSRVFAAYGIKVHSSHLGLIADFVT 296
L VD K N+ L + GIEAAR+ + E A+GI + H+ L+AD +T
Sbjct 1250 LSSVGVDPRKTNFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLLADVMT 1309
Query 297 RDGAIIPFNRLG-IQHCDSPFLQMAFETSFRFLTEACERSAVDNLKTPSAALIVGSPAVI 355
G ++ R G ++ DS L +FE + L EA S D + S +I+G+P +
Sbjct 1310 YRGEVLGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTV 1369
Query 356 GSHQSQLL 363
G+ +L+
Sbjct 1370 GTGTFKLM 1377
> sce:YDL140C RPO21, RPB1, RPB220, SUA8; B220 (EC:2.7.7.6); K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1733
Score = 64.3 bits (155), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 67/135 (49%), Gaps = 3/135 (2%)
Query 224 LHCSGSNLQWLHRLKETAVDHSKLETNDVLAMLQHYGIEAARALYLKEFSRVFAAYGIKV 283
L G NL + + +D +++ TN + +++ GIEA RA KE V A+ G V
Sbjct 1306 LETDGVNLSEV--MTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYV 1363
Query 284 HSSHLGLIADFVTRDGAIIPFNRLGIQHCDS-PFLQMAFETSFRFLTEACERSAVDNLKT 342
+ H+ L+ D +T G + R G ++ ++ +FE + L EA + +D+ +
Sbjct 1364 NYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRG 1423
Query 343 PSAALIVGSPAVIGS 357
S +I+G A IG+
Sbjct 1424 VSENVILGQMAPIGT 1438
> pfa:PF13_0150 DNA-directed RNA polymerase 3 largest subunit
(EC:2.7.7.6); K03018 DNA-directed RNA polymerase III subunit
RPC1 [EC:2.7.7.6]
Length=2356
Score = 64.3 bits (155), Expect = 7e-10, Method: Composition-based stats.
Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Query 228 GSNLQWLHRLKETAVDHSKLETNDVLAMLQHYGIEAARALYLKEFSRVFAAYGIKVHSSH 287
G++L ++ L+ VD + +N V+ + Q GIEAAR + E + AY I + H
Sbjct 2196 GNSLNYVLGLE--GVDFKHIISNHVINVFQVLGIEAARITIINEIKKCVEAYSIDIDIRH 2253
Query 288 LGLIADFVTRDGAIIPFNRLGIQHCDSPFLQMA-FETSFRFLTEACERSAVDNLKTPSAA 346
+ L+AD + G I+ NR GIQ L +A FE + L + VD + S +
Sbjct 2254 IMLLADIMAFTGDILGINRFGIQKARQSTLMLASFEETNEHLFVSSFFKNVDEINNISES 2313
Query 347 LIVGSPAVIGSHQSQLL 363
+IVG IG+ QLL
Sbjct 2314 IIVGKNIPIGTGAFQLL 2330
> ath:AT5G60040 NRPC1; NRPC1; DNA binding / DNA-directed RNA polymerase/
ribonucleoside binding / zinc ion binding; K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]
Length=1376
Score = 64.3 bits (155), Expect = 7e-10, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 69/136 (50%), Gaps = 3/136 (2%)
Query 223 ELHCSGSNLQWLHRLKETAVDHSKLETNDVLAMLQHYGIEAARALYLKEFSRVFAAYGIK 282
+L G+NL L + ++ +N+V+ + + GIEAAR + E V +G+
Sbjct 1219 KLFVEGTNL--LAVMGTPGINGRTTTSNNVVEVSKTLGIEAARTTIIDEIGTVMGNHGMS 1276
Query 283 VHSSHLGLIADFVTRDGAIIPFNRLGIQHCD-SPFLQMAFETSFRFLTEACERSAVDNLK 341
+ H+ L+AD +T G ++ R GIQ D S +Q +FE + L A VDN++
Sbjct 1277 IDIRHMMLLADVMTYRGEVLGIQRTGIQKMDKSVLMQASFERTGDHLFSAAASGKVDNIE 1336
Query 342 TPSAALIVGSPAVIGS 357
+ +I+G P +G+
Sbjct 1337 GVTECVIMGIPMKLGT 1352
> pfa:PFC0805w DNA-directed RNA polymerase II, putative; K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=2457
Score = 63.9 bits (154), Expect = 8e-10, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 1/117 (0%)
Query 242 VDHSKLETNDVLAMLQHYGIEAARALYLKEFSRVFAAYGIKVHSSHLGLIADFVTRDGAI 301
VD K +ND++ + + GIEA R LKE V + V+ HL ++ D +T+ G +
Sbjct 1930 VDFKKTVSNDIVEIFEVLGIEAVRRALLKELRTVISFDSSYVNYRHLSILCDVMTQKGYL 1989
Query 302 IPFNRLGIQHCDS-PFLQMAFETSFRFLTEACERSAVDNLKTPSAALIVGSPAVIGS 357
+ R GI D P ++ +FE + L EA + VDNL+ + +++G IG+
Sbjct 1990 MSITRHGINRVDKGPLIKCSFEETVEILLEAAAFAQVDNLRGITENIMLGQLCKIGT 2046
> tgo:TGME49_025260 DNA-directed RNA polymerase II largest subunit,
putative (EC:2.7.7.6 3.5.1.16); K03006 DNA-directed RNA
polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1892
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 3/141 (2%)
Query 224 LHCSGSNLQWLHRLKETAVDHSKLETNDVLAMLQHYGIEAARALYLKEFSRVFAAYGIKV 283
L G NL+ + L VD ++ +ND+ + GIEA R L+E V + G V
Sbjct 1343 LDTDGCNLEDV--LPIPMVDDTRTTSNDMTEIFHVLGIEAVRRALLRELRAVISFDGSYV 1400
Query 284 HSSHLGLIADFVTRDGAIIPFNRLGIQHCD-SPFLQMAFETSFRFLTEACERSAVDNLKT 342
+ HL ++ D +T+ G ++ R GI D P ++ +FE + L EA + D+L+
Sbjct 1401 NYRHLAILCDTMTQKGYLMSITRHGINRIDKGPLMKCSFEETVEILMEAAVFAEADHLRG 1460
Query 343 PSAALIVGSPAVIGSHQSQLL 363
+ +++G +G+ +L
Sbjct 1461 VTENIMMGQLCPLGTGYFDVL 1481
> cpv:cgd6_3290 DNA-directed RNA polymerase III C1 subunit ; K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]
Length=1871
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 64/120 (53%), Gaps = 1/120 (0%)
Query 249 TNDVLAMLQHYGIEAARALYLKEFSRVFAAYGIKVHSSHLGLIADFVTRDGAIIPFNRLG 308
+N V+ + + GIEAAR + ++E + AY + + H+ L+AD +T G ++ +R G
Sbjct 1714 SNHVMEVREVLGIEAARKVIIQEVQKCMDAYSMDIDLRHIQLLADIMTFRGDVLGISRFG 1773
Query 309 IQHCDSPFLQMA-FETSFRFLTEACERSAVDNLKTPSAALIVGSPAVIGSHQSQLLAVLP 367
IQ + L +A FE + L EA ++ VD + S +I+G P IG+ +L P
Sbjct 1774 IQKMRTSTLMLASFEETNEHLFEAAFQNRVDPVFGVSECVIMGKPIKIGTGSFDILYNSP 1833
> bbo:BBOV_III007400 17.m07648; RNA polymerase Rpb1, domain containing
protein; K03018 DNA-directed RNA polymerase III subunit
RPC1 [EC:2.7.7.6]
Length=1541
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 71/146 (48%), Gaps = 3/146 (2%)
Query 219 GSPMELHCSGSNLQWLHRLKETAVDHSKLETNDVLAMLQHYGIEAARALYLKEFSRVFAA 278
G +L G LQ + + V + +++N VL + + GIEAAR++ + E + A
Sbjct 1390 GFRYQLAVEGYGLQEV--IGAAGVKSTGVKSNHVLEVAKVLGIEAARSVIISEIQKCMDA 1447
Query 279 YGIKVHSSHLGLIADFVTRDGAIIPFNRLGIQHCDSPFLQMA-FETSFRFLTEACERSAV 337
Y I + ++ L+ D +T G +I NR GIQ + L +A FE + L EA
Sbjct 1448 YSIDIDQRYMKLLGDVMTFRGEVIGINRFGIQKMRASTLMLASFEETNEHLFEAAVHRLR 1507
Query 338 DNLKTPSAALIVGSPAVIGSHQSQLL 363
D +K S +I+G +G+ +L
Sbjct 1508 DPIKGVSECIIMGKQVPLGTGAFDVL 1533
> ath:AT4G35800 NRPB1; NRPB1 (RNA POLYMERASE II LARGE SUBUNIT);
DNA binding / DNA-directed RNA polymerase; K03006 DNA-directed
RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1840
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 79/170 (46%), Gaps = 6/170 (3%)
Query 194 VEKVTLQEPQGVSNPRIVQGSGCSTGSPMELHCSGSNLQWLHRLKETAVDHSKLETNDVL 253
+ KV +++ V R + G T L G NL L + VD + +N ++
Sbjct 1301 INKVFIKQ---VRKSRFDEEGGFKTSEEWMLDTEGVNL--LAVMCHEDVDPKRTTSNHLI 1355
Query 254 AMLQHYGIEAARALYLKEFSRVFAAYGIKVHSSHLGLIADFVTRDGAIIPFNRLGIQHCD 313
+++ GIEA R L E V + G V+ HL ++ D +T G ++ R GI D
Sbjct 1356 EIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRND 1415
Query 314 S-PFLQMAFETSFRFLTEACERSAVDNLKTPSAALIVGSPAVIGSHQSQL 362
+ P ++ +FE + L +A + D L+ + +++G A IG+ +L
Sbjct 1416 TGPLMRCSFEETVDILLDAAAYAETDCLRGVTENIMLGQLAPIGTGDCEL 1465
> bbo:BBOV_I003360 19.m02399; DNA-directed RNA polymerase II largest
subunit (EC:2.7.7.6); K03006 DNA-directed RNA polymerase
II subunit RPB1 [EC:2.7.7.6]
Length=1746
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 3/135 (2%)
Query 224 LHCSGSNLQWLHRLKETAVDHSKLETNDVLAMLQHYGIEAARALYLKEFSRVFAAYGIKV 283
L G NL+ + L VD K +ND+ + GIEAAR L+E V + G V
Sbjct 1324 LDTDGCNLEDV--LSIPCVDAQKSISNDISEIFHVLGIEAARMALLRELRAVISFDGSYV 1381
Query 284 HSSHLGLIADFVTRDGAIIPFNRLGIQHCD-SPFLQMAFETSFRFLTEACERSAVDNLKT 342
+ HL L+ D +T+ G I+ R G+ D P ++ +FE + L +A + +D LK
Sbjct 1382 NYRHLSLLCDVMTQKGHIMSITRHGLNRADRGPLVKCSFEETLEALVDAAVFAELDLLKG 1441
Query 343 PSAALIVGSPAVIGS 357
+ +++G +G+
Sbjct 1442 VTENVMLGQLCPMGT 1456
> dre:553347 polr2a, im:7136071; polymerase (RNA) II (DNA directed)
polypeptide A; K03006 DNA-directed RNA polymerase II subunit
RPB1 [EC:2.7.7.6]
Length=1972
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 75/171 (43%), Gaps = 1/171 (0%)
Query 194 VEKVTLQEPQGVSNPRIVQGSGCSTGSPMELHCSGSNLQWLHRLKETAVDHSKLETNDVL 253
+ KV + PQ + +I+ + E + + L E VD + +ND++
Sbjct 1301 ISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIV 1360
Query 254 AMLQHYGIEAARALYLKEFSRVFAAYGIKVHSSHLGLIADFVTRDGAIIPFNRLGIQHCD 313
+ GIEA R +E V + G V+ HL L+ D +T G ++ R GI D
Sbjct 1361 EIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQD 1420
Query 314 S-PFLQMAFETSFRFLTEACERSAVDNLKTPSAALIVGSPAVIGSHQSQLL 363
+ P ++ +FE + L EA D +K S +++G A G+ LL
Sbjct 1421 TGPLMKCSFEETVDVLMEASSHGESDPMKGVSENIMLGQLAPAGTGCFDLL 1471
> mmu:20020 Polr2a, 220kDa, Rpb1, Rpo2-1; polymerase (RNA) II
(DNA directed) polypeptide A (EC:2.7.7.6); K03006 DNA-directed
RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1932
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 1/171 (0%)
Query 194 VEKVTLQEPQGVSNPRIVQGSGCSTGSPMELHCSGSNLQWLHRLKETAVDHSKLETNDVL 253
+ KV + PQ + +I+ + E + + L E VD + +ND++
Sbjct 1304 ISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIV 1363
Query 254 AMLQHYGIEAARALYLKEFSRVFAAYGIKVHSSHLGLIADFVTRDGAIIPFNRLGIQHCD 313
+ GIEA R +E V + G V+ HL L+ D +T G ++ R G+ D
Sbjct 1364 EIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQD 1423
Query 314 S-PFLQMAFETSFRFLTEACERSAVDNLKTPSAALIVGSPAVIGSHQSQLL 363
+ P ++ +FE + L EA D +K S +++G A G+ LL
Sbjct 1424 TGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLL 1474
> hsa:5430 POLR2A, MGC75453, POLR2, POLRA, RPB1, RPBh1, RPO2,
RPOL2, RpIILS, hRPB220, hsRPB1; polymerase (RNA) II (DNA directed)
polypeptide A, 220kDa (EC:2.7.7.6 2.7.7.48); K03006 DNA-directed
RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1970
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 1/171 (0%)
Query 194 VEKVTLQEPQGVSNPRIVQGSGCSTGSPMELHCSGSNLQWLHRLKETAVDHSKLETNDVL 253
+ KV + PQ + +I+ + E + + L E VD + +ND++
Sbjct 1304 ISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIV 1363
Query 254 AMLQHYGIEAARALYLKEFSRVFAAYGIKVHSSHLGLIADFVTRDGAIIPFNRLGIQHCD 313
+ GIEA R +E V + G V+ HL L+ D +T G ++ R G+ D
Sbjct 1364 EIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQD 1423
Query 314 S-PFLQMAFETSFRFLTEACERSAVDNLKTPSAALIVGSPAVIGSHQSQLL 363
+ P ++ +FE + L EA D +K S +++G A G+ LL
Sbjct 1424 TGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLL 1474
> cpv:cgd3_2620 DNA-directed RNA polymerase,possible RNA polymerase
A/beta'/A'' subunit, long PHYSPTS repeat ; K03006 DNA-directed
RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1902
Score = 57.8 bits (138), Expect = 7e-08, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 3/135 (2%)
Query 224 LHCSGSNLQWLHRLKETAVDHSKLETNDVLAMLQHYGIEAARALYLKEFSRVFAAYGIKV 283
L G NL+ + L TA+D ++ +ND+ + GIEA R L+E V + G V
Sbjct 1379 LDTDGCNLEAV--LCHTAIDSTRTISNDITEVFSVLGIEAVRRALLRELRTVISFDGSYV 1436
Query 284 HSSHLGLIADFVTRDGAIIPFNRLGIQHCDS-PFLQMAFETSFRFLTEACERSAVDNLKT 342
+ HL L+ D +T+ G ++ R GI D P + +FE + L +A D L
Sbjct 1437 NYRHLALLCDNMTQKGHLMSITRHGINRVDKGPLQKCSFEETVEVLMDAAMFGETDYLNG 1496
Query 343 PSAALIVGSPAVIGS 357
S +++G A G+
Sbjct 1497 VSENVMLGQLAPYGT 1511
> sce:YOR116C RPO31, RPC1, RPC160; C160 (EC:2.7.7.6); K03018 DNA-directed
RNA polymerase III subunit RPC1 [EC:2.7.7.6]
Length=1460
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query 241 AVDHSKLETNDVLAMLQHYGIEAARALYLKEFSRVFAAYGIKVHSSHLGLIADFVTRDGA 300
V S+ TN VL + GIEAAR ++E + + +G+ V H+ L+ D +T G
Sbjct 1308 GVIGSRTTTNHVLEVFSVLGIEAARYSIIREINYTMSNHGMSVDPRHIQLLGDVMTYKGE 1367
Query 301 IIPFNRLGIQHCDSPFLQMA-FETSFRFLTEACERSAVDNLKTPSAALIVGSPAVIGS 357
++ R G+ LQ+A FE + L +A D ++ S +I+G IG+
Sbjct 1368 VLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMSIGT 1425
> cel:F36A4.7 ama-1; AMAnitin resistant family member (ama-1);
K03006 DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1852
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 5/167 (2%)
Query 194 VEKVTLQEPQGVSNPRIVQG--SGCSTGSPMELHCSGSNLQWLHRLKETAVDHSKLETND 251
+ KV + +P RI+ G + + L G+ L L L E +D + +ND
Sbjct 1292 ISKVYMNQPNTDDKKRIIITPEGGFKSVADWILETDGTAL--LRVLSERQIDPVRTTSND 1349
Query 252 VLAMLQHYGIEAARALYLKEFSRVFAAYGIKVHSSHLGLIADFVTRDGAIIPFNRLGIQH 311
+ + + GIEA R +E V + G V+ HL L+ D +T G ++ R GI
Sbjct 1350 ICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 1409
Query 312 CD-SPFLQMAFETSFRFLTEACERSAVDNLKTPSAALIVGSPAVIGS 357
+ ++ +FE + L EA + D +K S +++G A G+
Sbjct 1410 QEVGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGT 1456
> hsa:11128 POLR3A, RPC1, RPC155, hRPC155; polymerase (RNA) III
(DNA directed) polypeptide A, 155kDa (EC:2.7.7.6); K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]
Length=1390
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 3/142 (2%)
Query 223 ELHCSGSNLQWLHRLKETAVDHSKLETNDVLAMLQHYGIEAARALYLKEFSRVFAAYGIK 282
+L G NL+ + + V ++ +N+ + + GIEAAR + E +G+
Sbjct 1224 KLLVEGDNLRAV--MATHGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMS 1281
Query 283 VHSSHLGLIADFVTRDGAIIPFNRLGIQHCDSPFLQMA-FETSFRFLTEACERSAVDNLK 341
+ H+ L++D +T G ++ R G+ L +A FE + L +A D++
Sbjct 1282 IDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVC 1341
Query 342 TPSAALIVGSPAVIGSHQSQLL 363
S +I+G P IG+ +LL
Sbjct 1342 GVSECIIMGIPMNIGTGLFKLL 1363
> mmu:218832 Polr3a, 9330175N20Rik, BC053071, MGC62420, RPC1,
RPC155; polymerase (RNA) III (DNA directed) polypeptide A (EC:2.7.7.6);
K03018 DNA-directed RNA polymerase III subunit RPC1
[EC:2.7.7.6]
Length=1390
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 66/143 (46%), Gaps = 3/143 (2%)
Query 222 MELHCSGSNLQWLHRLKETAVDHSKLETNDVLAMLQHYGIEAARALYLKEFSRVFAAYGI 281
+L G NL+ + + V ++ +N+ + + GIEAAR + E +G+
Sbjct 1223 FKLLVEGDNLRAV--MATHGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGM 1280
Query 282 KVHSSHLGLIADFVTRDGAIIPFNRLGIQHCDSPFLQMA-FETSFRFLTEACERSAVDNL 340
+ H+ L++D +T G ++ R G+ L +A FE + L +A D++
Sbjct 1281 SIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSV 1340
Query 341 KTPSAALIVGSPAVIGSHQSQLL 363
S +I+G P IG+ +LL
Sbjct 1341 CGVSECIIMGIPMNIGTGLFKLL 1363
> pfa:PF13_0198 PfRh2a; reticulocyte binding protein 2 homolog
A; K13849 reticulocyte-binding protein
Length=3130
Score = 45.4 bits (106), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 56/84 (66%), Gaps = 5/84 (5%)
Query 3 REDEEQQQQQQQ---QQQQQQESESDSSSEEEEANVKQEKGEAAKVKREIKEEEFEANKQ 59
+E+E ++Q+Q++ ++Q+Q + E + +E+E K+E + + +R KEEE + +Q
Sbjct 2749 KEEELKRQEQERLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQKEEELKRQEQ 2808
Query 60 PIKKIKKEQQQQQQQQQQQPQQQQ 83
+++++E+Q+Q Q++++ +Q+Q
Sbjct 2809 --ERLEREKQEQLQKEEELKRQEQ 2830
Score = 43.5 bits (101), Expect = 0.001, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 55/92 (59%), Gaps = 11/92 (11%)
Query 3 REDEEQQQQQQQQQQQQQE----------SESDSSSEEEEANVKQEKGEAAKVKREIKEE 52
RE +EQ Q++++ ++Q+QE E + +EEE +QE+ + K+E ++
Sbjct 2763 REKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQKEEELK-RQEQERLEREKQEQLQK 2821
Query 53 EFEANKQPIKKIKKEQQQQQQQQQQQPQQQQL 84
E E +Q ++++KE+ ++Q+Q++ ++++L
Sbjct 2822 EEELKRQEQERLQKEEALKRQEQERLQKEEEL 2853
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
Query 3 REDEEQQQQQQQQQQQQQE--SESDSSSEEEEANVKQEKGEAAKVKREIKEEEFEANKQP 60
R+++E+ Q+++ ++Q+QE + + +E+ +++EK E + + E+K +E E ++
Sbjct 2777 RQEQERLQKEEALKRQEQERLQKEEELKRQEQERLEREKQEQLQKEEELKRQEQERLQKE 2836
Query 61 IKKIKKEQQQQQQQQQQQPQQQQLLDLADVLRGKR 95
++EQ++ Q++++ + Q+Q+ L+ + +R
Sbjct 2837 EALKRQEQERLQKEEELKRQEQERLERKKIELAER 2871
Score = 37.4 bits (85), Expect = 0.083, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 50/78 (64%), Gaps = 0/78 (0%)
Query 7 EQQQQQQQQQQQQQESESDSSSEEEEANVKQEKGEAAKVKREIKEEEFEANKQPIKKIKK 66
++Q++ Q++++ +++ + E++E K+E+ + + +R KEE + +Q + ++
Sbjct 2742 QEQERLQKEEELKRQEQERLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQKEE 2801
Query 67 EQQQQQQQQQQQPQQQQL 84
E ++Q+Q++ ++ +Q+QL
Sbjct 2802 ELKRQEQERLEREKQEQL 2819
Score = 37.4 bits (85), Expect = 0.085, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
Query 11 QQQQQQQQQQESESDSSSEEEEANVKQEKGEAAKVKREIKEEEFEANKQPIKKIKKEQQQ 70
++Q+Q++ Q+E E +E+ +++EK E + + E+K +E E ++ ++EQ++
Sbjct 2740 KRQEQERLQKEEEL---KRQEQERLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQER 2796
Query 71 QQQQQQQQPQQQQLLD 86
Q++++ + Q+Q+ L+
Sbjct 2797 LQKEEELKRQEQERLE 2812
Score = 34.7 bits (78), Expect = 0.65, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query 3 REDEEQQQQQQQ---QQQQQQESESDSSSEEEEANVKQEKGEAAKVKREIKEEEFEANKQ 59
+E+E ++Q+Q++ ++Q+Q + E + +E+E K+E + + +R KEEE + +Q
Sbjct 2799 KEEELKRQEQERLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQKEEELKRQEQ 2858
Query 60 PIKKIKKEQQQQQQQQQQQPQQQQLLDL 87
+ KK + +++Q + + ++ +
Sbjct 2859 ERLERKKIELAEREQHIKSKLESDMVKI 2886
Score = 33.1 bits (74), Expect = 1.7, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 51/78 (65%), Gaps = 0/78 (0%)
Query 6 EEQQQQQQQQQQQQQESESDSSSEEEEANVKQEKGEAAKVKREIKEEEFEANKQPIKKIK 65
+E+++ ++++Q+Q ++ E E+E +Q++ + ++E ++E E +Q ++++
Sbjct 2703 QEKERLEREKQEQLKKEEELRKKEQERQEQQQKEEALKRQEQERLQKEEELKRQEQERLE 2762
Query 66 KEQQQQQQQQQQQPQQQQ 83
+E+Q+Q Q++++ +Q+Q
Sbjct 2763 REKQEQLQKEEELKRQEQ 2780
Lambda K H
0.314 0.130 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 16336261752
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
Posted date: Sep 17, 2011 2:57 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40