bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_7209_orf2
Length=65
Score E
Sequences producing significant alignments: (Bits) Value
CE10130 49.3 2e-06
SPAC21E11.07 41.6 4e-04
7299068 40.4 9e-04
At4g12130 35.4 0.025
Hs20479074 32.0 0.25
Hs17436229 28.1 4.6
> CE10130
Length=305
Score = 49.3 bits (116), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 0/63 (0%)
Query 1 KMLIRQQMQLACQSLLLVHGAGAKQFLQGLITKDMESLNSVPLVYSFLLNVRGRILADFF 60
+M ++ ++L + LL +HG+ FLQGLIT D+ L + + +FLLN +GRI+ D
Sbjct 25 QMSTQRLIKLPHRVLLKLHGSDTNAFLQGLITNDVTKLQTQNGLAAFLLNTKGRIVEDVL 84
Query 61 IYR 63
++R
Sbjct 85 LWR 87
> SPAC21E11.07
Length=325
Score = 41.6 bits (96), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query 11 ACQSLLLVHGAGAKQFLQGLITKDMESLNSVPLVYSFLLNVRGRILADFFIY 62
+ +SL+ V G A +FLQGL T + N V Y+ LN +GR+L D FIY
Sbjct 27 SSKSLIRVEGVDAVKFLQGLTTNKITLDNPV---YTGFLNTQGRVLFDSFIY 75
> 7299068
Length=348
Score = 40.4 bits (93), Expect = 9e-04, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query 10 LACQSLLLVHGAGAKQFLQGLITKDMESLNS---VPLVYSFLLNVRGRILADFFIYRLD 65
L + L+ VHGA FLQGL T D+ + S +Y+ LN GR+L D +YR +
Sbjct 43 LGNRELIRVHGAEVVPFLQGLATNDVARIQSPGGPASMYAHFLNKAGRLLYDTILYRTN 101
> At4g12130
Length=363
Score = 35.4 bits (80), Expect = 0.025, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 20/73 (27%)
Query 9 QLACQSLLLVHGAGAKQFLQGLITKD-------------------MESLNSVPLVYSFLL 49
+L +S++ G +FLQGL+T D M S+ + P+ Y+ LL
Sbjct 34 RLKSRSVVRFSGPDTVKFLQGLLTNDVRRFGESSGEKNSAVPTPNMASVTNPPM-YAALL 92
Query 50 NVRGRILADFFIY 62
+GR L DFF+Y
Sbjct 93 TPQGRFLYDFFLY 105
> Hs20479074
Length=356
Score = 32.0 bits (71), Expect = 0.25, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query 9 QLACQSLLLVHGAGAKQFLQGLITKDMESLNSVPLV--------YSFLLNVRGRILADFF 60
+L ++LL V G A FL GL+T ++ + Y+ LNV+GR L D
Sbjct 52 RLDGRTLLRVRGPDAAPFLLGLLTNELPLPSPAAAGAPPAARAGYAHFLNVQGRTLYDVI 111
Query 61 IYRL 64
+Y L
Sbjct 112 LYGL 115
> Hs17436229
Length=230
Score = 28.1 bits (61), Expect = 4.6, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 0/36 (0%)
Query 26 FLQGLITKDMESLNSVPLVYSFLLNVRGRILADFFI 61
FL+ L KD+ L+S P V +F V G D F+
Sbjct 6 FLRALANKDIRELSSQPTVPAFPEGVAGEWQQDMFV 41
Lambda K H
0.332 0.144 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1166657202
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40