bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eten_6709_orf2 Length=51 Score E Sequences producing significant alignments: (Bits) Value At4g03430 54.7 4e-08 Hs6912732 46.6 1e-05 7293846 42.7 2e-04 CE28858 34.3 0.058 SPBC6B1.07 31.6 0.35 > At4g03430 Length=1029 Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 27/47 (57%), Positives = 31/47 (65%), Gaps = 0/47 (0%) Query 4 TAQAIIRAAIKEGVENINAKRVWSEDAEECLSRGSITVARALYTHAL 50 T QAII+ I GVE + KR W DA+EC RGSI ARA+Y HAL Sbjct 606 TCQAIIKNTIGIGVEEEDRKRTWVADADECKKRGSIETARAIYAHAL 652 > Hs6912732 Length=941 Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 0/48 (0%) Query 4 TAQAIIRAAIKEGVENINAKRVWSEDAEECLSRGSITVARALYTHALE 51 T QA++RA I G+E + K W EDA+ C++ ++ ARA+Y +AL+ Sbjct 521 TCQAVMRAVIGIGIEEEDRKHTWMEDADSCVAHNALECARAIYAYALQ 568 > 7293846 Length=913 Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 0/46 (0%) Query 6 QAIIRAAIKEGVENINAKRVWSEDAEECLSRGSITVARALYTHALE 51 Q+I++A I GVE + K+ W +DAE C + ARA+Y HAL+ Sbjct 495 QSIVKAVIGIGVEEEDRKQTWIDDAEFCAKENAFECARAVYAHALQ 540 > CE28858 Length=968 Score = 34.3 bits (77), Expect = 0.058, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 0/48 (0%) Query 4 TAQAIIRAAIKEGVENINAKRVWSEDAEECLSRGSITVARALYTHALE 51 T QAIIR I GVE+ + + W DAE + T R +Y AL+ Sbjct 547 TCQAIIRNVIGLGVEDEDKRTTWLADAENFEKEEAFTCVRTVYAIALK 594 > SPBC6B1.07 Length=906 Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust. Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 0/47 (0%) Query 4 TAQAIIRAAIKEGVENINAKRVWSEDAEECLSRGSITVARALYTHAL 50 TAQAII + G++ + W +DA+ ++R I ARA++ +L Sbjct 491 TAQAIINTCLGVGLDEEDQFDTWLDDAQSFIARKCIDCARAVFAFSL 537 Lambda K H 0.319 0.128 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1161614636 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40