bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_6392_orf3
Length=61
Score E
Sequences producing significant alignments: (Bits) Value
SPAC19G12.08 45.4 2e-05
YMR272c_2 38.9 0.002
7304220 33.1 0.12
At4g20870 31.6 0.42
At2g34770 31.2 0.53
Hs13236538 29.3 1.7
CE08370_2 28.5 3.3
> SPAC19G12.08
Length=347
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 36/58 (62%), Gaps = 8/58 (13%)
Query 8 LEPLTKTRWWQVLLLWGP--VCGYLAYCSFKTHPLPWSVGMLFF--GLFVWTFVEYCM 61
LEPLTKT W+ + L+W P G+L C+ +P+SV + FF GLF WT VEY M
Sbjct 150 LEPLTKTPWYMIPLIWVPCVTYGFLYACT----GIPFSVAITFFIIGLFTWTLVEYTM 203
> YMR272c_2
Length=237
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 0/54 (0%)
Query 8 LEPLTKTRWWQVLLLWGPVCGYLAYCSFKTHPLPWSVGMLFFGLFVWTFVEYCM 61
LEPLTKT WW V + W PV Y + K ++ + G+FVWT +EY +
Sbjct 43 LEPLTKTAWWVVPVAWLPVVVYHMGVALKNMNQLFACFLFCVGVFVWTLIEYGL 96
> 7304220
Length=230
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query 4 PWPQLEPLTKTRWWQVLLLWGPVCGYLAYCSFKT-----HPLPWSVGMLFFGLFVWTFVE 58
PW LE TKT WW V L W PV A F T + L G FG+ +W+F+E
Sbjct 29 PW-YLEMCTKTPWWLVPLFWIPVIVKCAVEEFTTAWQDSNQLAVFSGYFLFGVLLWSFLE 87
Query 59 YCM 61
Y +
Sbjct 88 YTL 90
> At4g20870
Length=237
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query 9 EPLTKTRWWQVLLLWGP-VCGYLAYCSFKTHPLPWSVGMLFFGLFVWTFVEYCM 61
E LT+T WW + +W P VC L+ + K P ++ FG+ WT +EY +
Sbjct 48 EFLTRTVWWAIPTIWLPVVCYVLSISASKGLTFPQIGLIVAFGVLTWTLLEYTL 101
> At2g34770
Length=237
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query 9 EPLTKTRWWQVLLLWGPVCGYLAYCSFKTH-PLPWSVGMLFFGLFVWTFVEYCM 61
E LT T WW V ++W PV + S LP V ++ G+F+WTF EY +
Sbjct 48 EFLTLTVWWAVPVIWLPVVVWCISRSVSMGCSLPEIVPIVVMGIFIWTFFEYVL 101
> Hs13236538
Length=280
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 19/73 (26%)
Query 8 LEPLTKTRWWQVLLLWGPVCGYLA--------------YCSFKTH---PLPWSV--GMLF 48
+E L+KT W+ V ++W P+ YL+ + SF T +P S+ G+
Sbjct 69 IEGLSKTVWYSVPIIWVPLVLYLSWSYYRTFAQGNVRLFTSFTTEYTVAVPKSMFPGLFM 128
Query 49 FGLFVWTFVEYCM 61
G F+W+ +EY +
Sbjct 129 LGTFLWSLIEYLI 141
> CE08370_2
Length=227
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query 8 LEPLTKTRWWQVLLLWGPVC---GYLAYCSFKTHPLPWSVGML-----FFGLFVWTFVEY 59
LE +T+T WW V +W P+ L+ SF T ++ +L G+ WT EY
Sbjct 32 LESMTRTAWWVVPAVWMPIVITFSILSVLSFSTSTDVYNSILLWSAWFVIGVLTWTLTEY 91
Query 60 CM 61
+
Sbjct 92 SL 93
Lambda K H
0.332 0.147 0.600
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1178852562
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40