bitscore colors: <40, 40-50 , 50-80, 80-200, >200

BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_5418_orf4
Length=60
Score E
Sequences producing significant alignments: (Bits) Value
7296005 35.8 0.021
CE27691 35.0 0.032
Hs22055158 32.7 0.15
At1g24706 32.7 0.19
> 7296005
Length=1638
Score = 35.8 bits (81), Expect = 0.021, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 24/34 (70%), Gaps = 0/34 (0%)
Query 23 DGMSVKFVLLFWRLSLEDILVPTEQYEASISKLQ 56
+ +S +F++ FW LS+ D+ VP E Y+ ++KL+
Sbjct 939 EDISPQFLVTFWSLSMYDLHVPNESYQREVAKLK 972
> CE27691
Length=1437
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query 2 ENWGECMLPLLKPSGIDPQKLDGMSVKFVLLFWRLSLEDILVPTEQYEASISKLQN 57
E+ E ++ LK S +P + + VKF +FW L++ DI VPT YE ++ L+
Sbjct 844 ESQVEMLMDELKAS--EPGMEENIPVKFFAVFWMLTMYDIEVPTAAYERTLDALKK 897
> Hs22055158
Length=1514
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 0/34 (0%)
Query 23 DGMSVKFVLLFWRLSLEDILVPTEQYEASISKLQ 56
D +S +F FW L++ D+ VP YE ++KL+
Sbjct 795 DDISPQFYATFWSLTMYDLAVPHTSYEREVNKLK 828
> At1g24706
Length=1705
Score = 32.7 bits (73), Expect = 0.19, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 0/37 (0%)
Query 23 DGMSVKFVLLFWRLSLEDILVPTEQYEASISKLQNAL 59
+ +S FW L+L D+ VP +YE+ ISK AL
Sbjct 817 NSLSPDLYATFWGLTLYDLHVPRNRYESEISKQHTAL 853
Lambda K H
0.318 0.136 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1181901402
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40