bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_5288_orf1
Length=187
Score E
Sequences producing significant alignments: (Bits) Value
At4g00690 39.7 0.003
At3g06910 38.1 0.011
At1g10570 34.3 0.14
SPBC19G7.09 34.3 0.17
At5g60190 33.1 0.31
CE01521 31.6 0.87
SPBP19A11.07c 31.2 1.2
CE20145 30.4 1.9
At1g09730 30.4 1.9
YPL020c 30.4 2.3
CE17156 30.0 2.7
Hs22045248 30.0 3.1
Hs11055994_2 29.6 3.5
7293560 29.6 3.9
SPBC17D11.01 29.6 4.1
Hs20534876 29.3 4.4
Hs7657550 28.9 5.9
At3g26240 28.1 9.4
> At4g00690
Length=233
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 24/33 (72%), Gaps = 0/33 (0%)
Query 34 GVSCTLHTPRQQNGYDCGVFVVEYVYFLTRNLN 66
G+ P+QQNGYDCG+F+++Y+ F +R L+
Sbjct 169 GMEYVEERPQQQNGYDCGMFMLKYIDFYSRGLS 201
> At3g06910
Length=478
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 21/25 (84%), Gaps = 0/25 (0%)
Query 42 PRQQNGYDCGVFVVEYVYFLTRNLN 66
P Q+NG+DCG+F+V+Y+ F +R L+
Sbjct 429 PMQRNGFDCGMFMVKYIDFYSRGLD 453
> At1g10570
Length=566
Score = 34.3 bits (77), Expect = 0.14, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 47/94 (50%), Gaps = 16/94 (17%)
Query 1 KRFLRHEFEHRCGGEMNCGQEVELCTESCCWHD--GVSCTLHTPRQQNGYDCGVFVVEYV 58
KRFLR E+ + +N ++L + W D + P+Q+N +DCG+F+ +
Sbjct 461 KRFLREEWNY-----LNQDAPLDLPISAKVWRDLPNMINEAEVPQQKNDFDCGLFL---L 512
Query 59 YFLTRNLN------AIETLLLGPSRDFQPQQRSS 86
+F+ R + ++ L + + F+P++ S+
Sbjct 513 FFIRRFIEEAPQRLTLQDLKMIHKKWFKPEEASA 546
> SPBC19G7.09
Length=568
Score = 34.3 bits (77), Expect = 0.17, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 20/26 (76%), Gaps = 0/26 (0%)
Query 40 HTPRQQNGYDCGVFVVEYVYFLTRNL 65
++PRQ+NG+DCGVF + ++RN+
Sbjct 517 NSPRQRNGHDCGVFACKTAECVSRNV 542
> At5g60190
Length=226
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 17/19 (89%), Gaps = 1/19 (5%)
Query 37 CTLHTPRQQNGYDCGVFVV 55
CT TP+Q+NGYDCGVF++
Sbjct 154 CT-DTPQQKNGYDCGVFLL 171
> CE01521
Length=342
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 27/80 (33%)
Query 1 KRFLRHEFEHRCGGEMNCGQEVELCTESCCWHDGVSCTL--HTPRQQNGYDCGVFVVEYV 58
+ F+++ +E R G M + C L P+Q N +DCG+F+ E+
Sbjct 273 ESFMKYSYEKRTGNAMPFP---------------LPCILPQRMPQQTNNFDCGIFIAEFA 317
Query 59 YFLTRNLNAIETLLLGPSRD 78
LL P +D
Sbjct 318 ----------RRFLLSPPKD 327
> SPBP19A11.07c
Length=676
Score = 31.2 bits (69), Expect = 1.2, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query 44 QQNGYDCGVFVVEYVYFLTRNLN---AIETLLLGPSRDFQP 81
QQN DC + ++YFL N N I LL R F+P
Sbjct 490 QQNASDCKKLLSSFLYFLINNFNDNLHIIELLQKDKRKFEP 530
> CE20145
Length=1297
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
Query 41 TPRQQN----GYDCGVFVVEYVYFLTRNLNAIETLLLGPSRDF-----QPQQRSSRDQTP 91
TP QN G+ C + +YF R++ I+ L G + +P+ S Q P
Sbjct 742 TPNSQNSCPLGFQCTYSSIRMLYFCCRDIVRIDKCLQGSRPEIWQSTAEPRACSRDAQCP 801
Query 92 DSTASFVP 99
+T+ + P
Sbjct 802 STTSCYAP 809
> At1g09730
Length=865
Score = 30.4 bits (67), Expect = 1.9, Method: Composition-based stats.
Identities = 9/21 (42%), Positives = 17/21 (80%), Gaps = 0/21 (0%)
Query 38 TLHTPRQQNGYDCGVFVVEYV 58
+L P+Q+N +DCG+F++ Y+
Sbjct 499 SLELPQQENSFDCGLFLLHYL 519
> YPL020c
Length=621
Score = 30.4 bits (67), Expect = 2.3, Method: Composition-based stats.
Identities = 10/16 (62%), Positives = 13/16 (81%), Gaps = 0/16 (0%)
Query 39 LHTPRQQNGYDCGVFV 54
L P+Q NGYDCG++V
Sbjct 569 LDCPQQPNGYDCGIYV 584
> CE17156
Length=311
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 20/30 (66%), Gaps = 0/30 (0%)
Query 42 PRQQNGYDCGVFVVEYVYFLTRNLNAIETL 71
P+Q+N DCG+F++ + + T+ A ++L
Sbjct 246 PQQKNSVDCGIFMMAFAEYFTKYNTAWQSL 275
> Hs22045248
Length=144
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query 31 WHDGVSCTLHTPRQQNGYDCGVFVVEY 57
W V T P+Q+N DCGVFV++Y
Sbjct 85 WQTAV--TKCIPQQKNDSDCGVFVLQY 109
> Hs11055994_2
Length=247
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%), Gaps = 0/23 (0%)
Query 42 PRQQNGYDCGVFVVEYVYFLTRN 64
P+Q NG DCG+F +Y +++R+
Sbjct 198 PQQLNGSDCGMFTCKYADYISRD 220
> 7293560
Length=1513
Score = 29.6 bits (65), Expect = 3.9, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 0/24 (0%)
Query 42 PRQQNGYDCGVFVVEYVYFLTRNL 65
PRQ N DCGVF + ++TR++
Sbjct 1463 PRQGNSSDCGVFSCMFAEYITRDV 1486
> SPBC17D11.01
Length=281
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query 43 RQQNGYDCGVFVVEYVYFLTRNL--NAIETLLLGPSRDFQPQQRSSRDQ 89
+Q+NGYDCG V + L R L + + T + FQP + R+Q
Sbjct 160 QQRNGYDCGAHVCAFTLELVRRLLHSPMPTSSMWNLSTFQPDVTAIREQ 208
> Hs20534876
Length=170
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 0/24 (0%)
Query 41 TPRQQNGYDCGVFVVEYVYFLTRN 64
P+Q NG DCG+F +Y +++R+
Sbjct 120 IPQQLNGSDCGMFTCKYADYISRD 143
> Hs7657550
Length=643
Score = 28.9 bits (63), Expect = 5.9, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 0/23 (0%)
Query 42 PRQQNGYDCGVFVVEYVYFLTRN 64
P+Q NG DCG+F +Y +T++
Sbjct 594 PQQMNGSDCGMFACKYADCITKD 616
> At3g26240
Length=922
Score = 28.1 bits (61), Expect = 9.4, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query 12 CGGEMNCGQEVELCTESCCWHDGVSCTLH-----TPRQQNGYDCGVFVV 55
C G++N + C E CC H ++C L PR CG ++
Sbjct 808 CEGKINPEEGFYRCDEYCCVHLHITCLLGKDLYLKPRSSWSLSCGALLI 856
Lambda K H
0.321 0.134 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 3058524910
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40