bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eten_4472_orf2 Length=57 Score E Sequences producing significant alignments: (Bits) Value Hs6912676 57.8 5e-09 CE06519 53.9 7e-08 SPCC188.11 51.6 3e-07 7291006 50.8 6e-07 At1g77180 50.1 1e-06 Hs20475567_2 41.2 5e-04 > Hs6912676 Length=536 Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 28/50 (56%), Positives = 35/50 (70%), Gaps = 0/50 (0%) Query 8 AQSRLQKSQKAPAREIPPYLHRQGFIPRCEEDFGGGGAYPEIFVAQFPLG 57 +Q Q S + RE PPY +R+G+IPR EDFG GGA+PEI VAQ+PL Sbjct 26 SQRSRQTSLVSSRREPPPYGYRKGWIPRLLEDFGDGGAFPEIHVAQYPLD 75 > CE06519 Length=535 Score = 53.9 bits (128), Expect = 7e-08, Method: Composition-based stats. Identities = 25/38 (65%), Positives = 28/38 (73%), Gaps = 0/38 (0%) Query 20 AREIPPYLHRQGFIPRCEEDFGGGGAYPEIFVAQFPLG 57 ++E PPY R F PR EDFG GGA+PEI VAQFPLG Sbjct 41 SKEPPPYGKRTSFRPRGPEDFGDGGAFPEIHVAQFPLG 78 > SPCC188.11 Length=557 Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 22/34 (64%), Positives = 26/34 (76%), Gaps = 0/34 (0%) Query 23 IPPYLHRQGFIPRCEEDFGGGGAYPEIFVAQFPL 56 IPPY R+G+ P EDFG GGA+PEI VAQ+PL Sbjct 43 IPPYGQRKGWFPSSPEDFGDGGAFPEIHVAQYPL 76 > 7291006 Length=360 Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 20/34 (58%), Positives = 26/34 (76%), Gaps = 0/34 (0%) Query 24 PPYLHRQGFIPRCEEDFGGGGAYPEIFVAQFPLG 57 PPY R+ ++P + DFG GGA+PEI VAQ+PLG Sbjct 42 PPYGQRKDWVPHTDADFGDGGAFPEIHVAQYPLG 75 > At1g77180 Length=613 Score = 50.1 bits (118), Expect = 1e-06, Method: Composition-based stats. Identities = 23/48 (47%), Positives = 31/48 (64%), Gaps = 0/48 (0%) Query 9 QSRLQKSQKAPAREIPPYLHRQGFIPRCEEDFGGGGAYPEIFVAQFPL 56 +S KS + +P YL+RQG P+ EDFG GGA+PEI + Q+PL Sbjct 32 ESETVKSSSIKFKVVPAYLNRQGLRPKNPEDFGDGGAFPEIHLPQYPL 79 > Hs20475567_2 Length=320 Score = 41.2 bits (95), Expect = 5e-04, Method: Composition-based stats. Identities = 18/29 (62%), Positives = 23/29 (79%), Gaps = 0/29 (0%) Query 28 HRQGFIPRCEEDFGGGGAYPEIFVAQFPL 56 +R+G+ R EDFG GGA+PEI VAQ+PL Sbjct 3 YRKGWTLRLLEDFGDGGAFPEIHVAQYPL 31 Lambda K H 0.321 0.141 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1191047922 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40