bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_4060_orf2
Length=129
Score E
Sequences producing significant alignments: (Bits) Value
At5g62410 49.7 1e-06
At3g47460 47.8 5e-06
7303132 46.6 1e-05
YFR031c 43.5 1e-04
SPBP4H10.06c 42.0 3e-04
CE29497 40.8 6e-04
Hs5453591 39.3 0.002
SPBC29A10.04 38.9 0.003
Hs5453642 37.0 0.008
Hs14764231 37.0 0.008
7293243 31.6 0.38
Hs18594408 30.4 0.76
Hs4885399 30.0 1.1
Hs22061534 28.9 2.8
ECU04g0690 27.3 6.7
> At5g62410
Length=1175
Score = 49.7 bits (117), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query 28 EYAFGGGLICRSAAIAQKITYQKNCRLAFPTATAEGDVFQTGGIMAGGS 76
EY FG +C++ +A+++ + ++ R P+ T EGD+FQ G++ GGS
Sbjct 619 EYVFGSTFVCKTTDVAKEVAFNRDIRT--PSVTLEGDIFQPSGLLTGGS 665
> At3g47460
Length=1171
Score = 47.8 bits (112), Expect = 5e-06, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query 28 EYAFGGGLICRSAAIAQKITYQKNCRLAFPTATAEGDVFQTGGIMAGGS 76
EY FG +C++ A+++ + + R P+ T EGDVFQ G++ GGS
Sbjct 616 EYVFGSTFVCKTTDAAKEVAFNREIRT--PSVTLEGDVFQPSGLLTGGS 662
> 7303132
Length=1179
Score = 46.6 bits (109), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 7/67 (10%)
Query 13 WALRRYDVRRHSK-VAEYAFGGGLICRSAAIAQKITYQK--NCRLAFPTATAEGDVFQTG 69
WA+ D R+ + V ++ FGG LIC+ +A++I+Y NCR + T EGDV
Sbjct 603 WAMSLIDYDRYYEPVMKFCFGGTLICKDLIVAKQISYDPRINCR----SVTLEGDVVDPH 658
Query 70 GIMAGGS 76
G ++GG+
Sbjct 659 GTVSGGA 665
> YFR031c
Length=1170
Score = 43.5 bits (101), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query 24 SKVAEYAFGGGLICRSAAIAQKITYQKNCRLAFPTATAEGDVFQTGGIMAGGSVRDVRQT 83
+K E+ FG LIC A+KIT+ R + T +GDV+ G ++GGS R+ ++
Sbjct 619 TKAMEFIFGNSLICEDPETAKKITFHPKIRAR--SITLQGDVYDPEGTLSGGS-RNTSES 675
Query 84 ML 85
+L
Sbjct 676 LL 677
> SPBP4H10.06c
Length=1172
Score = 42.0 bits (97), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query 28 EYAFGGGLICRSAAIAQKITYQKNCRLAFPTATAEGDVFQTGGIMAGGSV 77
+Y FG L+C + A+K+T+ + +L + T +GDV+ G + GGSV
Sbjct 622 QYVFGSTLVCDTPESAKKVTFHPSVKLK--SVTLDGDVYDPSGTLTGGSV 669
> CE29497
Length=1281
Score = 40.8 bits (94), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query 25 KVAEYAFGGGLICRSAAIAQKITYQK-NCRLAFPTATAEGDVFQTGGIMAGGSVRDVRQT 83
K ++ G L+C S A+++ Y + F + +G +FQ G+M+GGS D+RQ
Sbjct 620 KALQFVCGNALVCESQEDAKQLAYGGGELKDRFKAVSMDGTLFQQSGVMSGGSA-DLRQK 678
Query 84 MLTWKVRQTARVIRIESNSLFPK 106
W + + +R + N L K
Sbjct 679 SKKWD-EKVVKQLREKRNQLNEK 700
> Hs5453591
Length=1197
Score = 39.3 bits (90), Expect = 0.002, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query 25 KVAEYAFGGGLICRSAAIAQKITYQKNCRLAFPTATAEGDVFQTGGIMAGGSVRDVRQTM 84
K E+ FG +C + A+K+ + K R+ T T GDVF G ++GG+ R ++
Sbjct 618 KAMEFVFGTTFVCDNMDNAKKVAFDK--RIMTRTVTLGGDVFDPHGTLSGGA-RSQAASI 674
Query 85 LT--WKVRQTARVIRIESNSL 103
LT +++ +RI+ N L
Sbjct 675 LTKFQELKDVQDELRIKENEL 695
> SPBC29A10.04
Length=1233
Score = 38.9 bits (89), Expect = 0.003, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query 23 HSKVAEYAFGGGLICRSAAIAQKITYQKNCRLAFPTATAEGDVFQTGGIMAGGS 76
+ +V A G LIC S +A+ ++Y K RL T T EG V G++ GGS
Sbjct 612 YERVMISAVGNTLICDSMTVARDLSYNK--RLNAKTVTLEGTVIHKTGLITGGS 663
> Hs5453642
Length=1233
Score = 37.0 bits (84), Expect = 0.008, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query 17 RYDVRRHSKVAEYAFGGGLICRSAAIAQKITYQKNCRLAFPTATAEGDVFQTGGIMAGGS 76
RY+ K +YA G L+C + A++I + + R T +G +FQ G+++GG+
Sbjct 599 RYEPPHIKKALQYACGNALVCDNVEDARRIAFGGHQR--HKTVALDGTLFQKSGVISGGA 656
Query 77 VRDVRQTMLTW 87
D++ W
Sbjct 657 -SDLKAKARRW 666
> Hs14764231
Length=1233
Score = 37.0 bits (84), Expect = 0.008, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query 17 RYDVRRHSKVAEYAFGGGLICRSAAIAQKITYQKNCRLAFPTATAEGDVFQTGGIMAGGS 76
RY+ K +YA G L+C + A++I + + R T +G +FQ G+++GG+
Sbjct 599 RYEPPHIKKALQYACGNALVCDNVEDARRIAFGGHQR--HKTVALDGTLFQKSGVISGGA 656
Query 77 VRDVRQTMLTW 87
D++ W
Sbjct 657 -SDLKAKARRW 666
> 7293243
Length=1211
Score = 31.6 bits (70), Expect = 0.38, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query 17 RYDVRRHSKVAEYAFGGGLICRSAAIAQKITYQKNCRLAFPTATAEGDVFQTGGIMAGGS 76
+YD +H K Y FG LICR+ A ++ T +GD + G + GG
Sbjct 626 KYD-EQHDKALRYIFGKTLICRNLERATELAKST----GLDCVTLDGDQVSSKGSLTGGY 680
Query 77 VRDVRQTMLTWKVR 90
R + K R
Sbjct 681 FNTSRSRLEMQKKR 694
> Hs18594408
Length=1202
Score = 30.4 bits (67), Expect = 0.76, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query 25 KVAEYAFGGGLICRSAAIAQKITYQKNCRLAFPTATAEGDVFQTGGIMAGGSVRDVRQTM 84
KV ++ G GL+C + A+ I R T +G +F G+++GGS D++
Sbjct 606 KVIQFVCGNGLVCETMEEARHIALSGPERQK--TVALDGTLFLKSGVISGGS-SDLKYKA 662
Query 85 LTWKVRQ 91
W ++
Sbjct 663 RCWDEKE 669
> Hs4885399
Length=1217
Score = 30.0 bits (66), Expect = 1.1, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Query 17 RYDVRRHSKVAEYAFGGGLICRSAAIAQKI--TYQKNCRLAFPTATAEGDVFQTGGIMAG 74
RY+ R K ++ FG LICRS ++ ++ + +C T EGD G + G
Sbjct 614 RYN-PRFDKAFKHVFGKTLICRSMEVSTQLARAFTMDC------ITLEGDQVSHRGALTG 666
Query 75 GSVRDVRQTML 85
G D R++ L
Sbjct 667 G-YYDTRKSRL 676
> Hs22061534
Length=195
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query 27 AEYAFGGGLICRSAAIAQKITYQKNCRLAFPTATAEGDVF 66
++ + GG +I + QK Y K C+L P T E VF
Sbjct 47 SDMSLGGHIILHT----QKFLYSKACKLLIPEVTIEPGVF 82
> ECU04g0690
Length=2371
Score = 27.3 bits (59), Expect = 6.7, Method: Composition-based stats.
Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 8/98 (8%)
Query 26 VAEYAFGGGLICRSAAIAQKITYQKNCRLAFPTATAEGDVFQTGGIMAG-----GSVRDV 80
V EY G ++ R ++ +KN R T EG V+ I G G+ D
Sbjct 1574 VGEYGADGSVVIRKKSVRVVTLVRKNYRAHRARVTHEGMVWTNEAIFGGLGPRAGAYPDY 1633
Query 81 RQTMLTWKVRQTARVIRIESNSLF---PKFRLYGAAEE 115
+L +K + R++ + RL +E+
Sbjct 1634 IHFLLEFKGDSSTRIVEFRYTHFIRNQTRMRLLAVSEQ 1671
Lambda K H
0.325 0.136 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1209785478
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40