bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_4008_orf1
Length=147
Score E
Sequences producing significant alignments: (Bits) Value
At4g04950 50.4 1e-06
SPAPB2B4.02 44.7 6e-05
YDR098c 44.7 7e-05
YER174c 44.3 7e-05
> At4g04950
Length=488
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query 21 QQQQQEERGTQQNSKTSASPMSDEELEAKLLQLVEKTPVVLFMKGRPEAPLCGFSARALL 80
++ Q+E G + + +S E L A+L LV PV+LFMKGRPE P CGFS + +
Sbjct 259 SKESQDEAGKGGGVSSGNTGLS-ETLRARLEGLVNSKPVMLFMKGRPEEPKCGFSGKVVE 317
Query 81 LL 82
+L
Sbjct 318 IL 319
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 5/68 (7%)
Query 30 TQQNSKTS----ASPMSDEE-LEAKLLQLVEKTPVVLFMKGRPEAPLCGFSARALLLLEA 84
++N+K S A P+S + L+++L +L PV+LFMKG PE P CGFS + + +L+
Sbjct 132 VKENAKASLQDRAQPVSTADALKSRLEKLTNSHPVMLFMKGIPEEPRCGFSRKVVDILKE 191
Query 85 AGVREYTF 92
V +F
Sbjct 192 VNVDFGSF 199
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 0/47 (0%)
Query 46 LEAKLLQLVEKTPVVLFMKGRPEAPLCGFSARALLLLEAAGVREYTF 92
LE +L L+ + V+LFMKG P+ P CGFS++ + L V +F
Sbjct 390 LEDRLKALINSSEVMLFMKGSPDEPKCGFSSKVVKALRGENVSFGSF 436
> SPAPB2B4.02
Length=146
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 0/36 (0%)
Query 52 QLVEKTPVVLFMKGRPEAPLCGFSARALLLLEAAGV 87
Q V++ P+VLFMKG P P+CGFS +A+ +L V
Sbjct 31 QAVKEDPIVLFMKGTPTRPMCGFSLKAIQILSLENV 66
> YDR098c
Length=285
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 7/102 (6%)
Query 46 LEAKLLQLVEKTPVVLFMKGRPEAPLCGFSARALLLLEAAGVREYTFVDC----SIPQHL 101
+ A+L +LV PV+LFMKG P P CGFS + + +L VR + F D S+ Q+L
Sbjct 185 INARLTKLVNAAPVMLFMKGSPSEPKCGFSRQLVGILREHQVR-FGFFDILRDESVRQNL 243
Query 102 PQQQQQQQ--QQQRQGQQRQGQERKKQQGGEGEDSEQQQLQQ 141
+ + Q G+ + G + K+ E D Q LQ
Sbjct 244 KKFSEWPTFPQLYINGEFQGGLDIIKESLEEDPDFLQHALQS 285
> YER174c
Length=244
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 23/30 (76%), Gaps = 0/30 (0%)
Query 46 LEAKLLQLVEKTPVVLFMKGRPEAPLCGFS 75
+ A+L++LV+ PV+LFMKG P P CGFS
Sbjct 145 INARLVKLVQAAPVMLFMKGSPSEPKCGFS 174
Lambda K H
0.307 0.121 0.320
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1785281974
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40