bitscore colors: <40, 40-50 , 50-80, 80-200, >200

BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_3275_orf1
Length=130
Score E
Sequences producing significant alignments: (Bits) Value
At5g18790 41.2 5e-04
At3g06320 41.2 5e-04
SPBC4F6.08c 35.4 0.028
Hs4759048 29.6 1.4
Hs18585714 28.1 3.9
> At5g18790
Length=58
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 0/47 (0%)
Query 20 LLVQLKSAALSNFFYMTHKSPTKKNTRIALRKHDPRAGKHVMFYETR 66
+ ++L SAA + FFY+ KS ++ RK+DPR +HV+F E +
Sbjct 10 MFIRLVSAAGTGFFYVKRKSTKGLLEKLEFRKYDPRVNRHVLFTEQK 56
> At3g06320
Length=58
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 0/47 (0%)
Query 20 LLVQLKSAALSNFFYMTHKSPTKKNTRIALRKHDPRAGKHVMFYETR 66
+ ++L SAA + FFY+ KS ++ RK+DPR +HV+F E +
Sbjct 10 MFIRLVSAAGTGFFYVKRKSTKGLLEKLEFRKYDPRVNRHVLFTEQK 56
> SPBC4F6.08c
Length=55
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query 19 RLLVQLKSAALSNFFYMTHKSPTKKNTRIALRKHDPRAGKHVMFYETR 66
RLLV+L S A + FFY+ +S K ++A K+DP+ K V+F E++
Sbjct 8 RLLVKLLSTAGTGFFYV--RSRPKAAPKLAFIKYDPKIHKRVLFEESK 53
> Hs4759048
Length=65
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query 5 MFFLSPCLLRSRSKRLLVQLKSAALSNFFYMTHKSPTKKNTRIALRKHDPRAGKHVMFYE 64
MF + +S+SK +LV++ S A + F + T ++ ++ ++ L +DP + V+F E
Sbjct 1 MFLSAVFFAKSKSKNILVRMVSEAGTGFCFNTKRNRLRE--KLTLLHYDPVVKQRVLFVE 58
Query 65 TRQ 67
++
Sbjct 59 KKK 61
> Hs18585714
Length=458
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 0/42 (0%)
Query 15 SRSKRLLVQLKSAALSNFFYMTHKSPTKKNTRIALRKHDPRA 56
++ R ++++K +S F ++ P KK R+ RK PRA
Sbjct 17 AKQDRTILRIKHCGISIFKRCNNEEPVKKRERMIKRKRSPRA 58
Lambda K H
0.323 0.133 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1246445644
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40