bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eten_3256_orf1 Length=98 Score E Sequences producing significant alignments: (Bits) Value Hs14249592 45.1 3e-05 7295869 45.1 3e-05 At5g20520 39.7 0.001 YNL320w 35.8 0.018 SPBC32H8.03 28.9 2.2 CE18544 27.7 5.4 CE15463 26.9 9.4 > Hs14249592 Length=201 Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%) Query 1 STKLVPPSHMDVLYSSCGARLKLREDVENGGHNDTWEVGGQSYYNRLREFVQVALSASTS 60 S +L+PP M LY +R K +G HNDTW+ Q Y+ L +F++ + + + Sbjct 131 SDQLIPPVMMKQLYELSPSRTKRLAIFPDGTHNDTWQC--QGYFTALEQFIKEVVKSHSP 188 Query 61 SEVSRASGAHSTI 73 E+++ S + I Sbjct 189 EEMAKTSSNVTII 201 > 7295869 Length=338 Score = 45.1 bits (105), Expect = 3e-05, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 2/48 (4%) Query 4 LVPPSHMDVLYSSCGARLKLREDVENGGHNDTWEVGGQSYYNRLREFV 51 LVPP M LY+ CG+ +K + G HNDTW V G YY + F+ Sbjct 265 LVPPRMMRALYTKCGSEIKRLLEFPGGSHNDTWIVDG--YYQAIGGFL 310 > At5g20520 Length=340 Score = 39.7 bits (91), Expect = 0.001, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%) Query 3 KLVPPSHMDVLYSSCGARLKLREDVE--NGGHNDTWEVGGQSYYNRLREFVQ 52 ++VPP HM +LY+ AR VE +G H DTW GG+ Y+ +F++ Sbjct 271 EMVPPFHMKMLYAKAAARNPQCTFVEFPSGMHMDTWLSGGEVYWKTNLQFLE 322 > YNL320w Length=284 Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%) Query 3 KLVPPSHMDVLYSSCGARLKLREDVENGGHNDTWEVGGQSYYNRLREFV 51 ++VPP HM LY +C + K + G HNDT + Y++ +R+F+ Sbjct 232 EIVPPFHMRKLYETCPSSNKKIFEFPLGSHNDT--IIQDGYWDIIRDFL 278 > SPBC32H8.03 Length=299 Score = 28.9 bits (63), Expect = 2.2, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%) Query 3 KLVPPSHMDVLYSSCGARLKLREDVENGGHNDTWEVGGQSYYNRLREFV 51 ++VPP M +L+ CG+ K HNDT G Y+ + +F+ Sbjct 243 EIVPPPQMVLLFGLCGSAKKKFHSFPKCTHNDT--CLGDGYFQVIADFL 289 > CE18544 Length=195 Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust. Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 3/50 (6%) Query 1 STKLVPPSHMDVLYSSCGARLKLREDVENGGHNDTWEVGGQSYYNRLREF 50 +T P ++ ++ + A++ L +V N G W+ GQ Y+RLR Sbjct 28 TTDSFPVQYVPTVFDNYSAQMSLDGNVVNLG---LWDTAGQEDYDRLRPL 74 > CE15463 Length=1112 Score = 26.9 bits (58), Expect = 9.4, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 0/47 (0%) Query 27 VENGGHNDTWEVGGQSYYNRLREFVQVALSASTSSEVSRASGAHSTI 73 V N N+ + GQ +NR+R + + +SSE ++ +GA T+ Sbjct 366 VLNETDNEAYVTNGQFIWNRMRRMKFEGVVSRSSSEENKDAGAIGTV 412 Lambda K H 0.310 0.122 0.346 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1194657780 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40