bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_3256_orf1
Length=98
Score E
Sequences producing significant alignments: (Bits) Value
Hs14249592 45.1 3e-05
7295869 45.1 3e-05
At5g20520 39.7 0.001
YNL320w 35.8 0.018
SPBC32H8.03 28.9 2.2
CE18544 27.7 5.4
CE15463 26.9 9.4
> Hs14249592
Length=201
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query 1 STKLVPPSHMDVLYSSCGARLKLREDVENGGHNDTWEVGGQSYYNRLREFVQVALSASTS 60
S +L+PP M LY +R K +G HNDTW+ Q Y+ L +F++ + + +
Sbjct 131 SDQLIPPVMMKQLYELSPSRTKRLAIFPDGTHNDTWQC--QGYFTALEQFIKEVVKSHSP 188
Query 61 SEVSRASGAHSTI 73
E+++ S + I
Sbjct 189 EEMAKTSSNVTII 201
> 7295869
Length=338
Score = 45.1 bits (105), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query 4 LVPPSHMDVLYSSCGARLKLREDVENGGHNDTWEVGGQSYYNRLREFV 51
LVPP M LY+ CG+ +K + G HNDTW V G YY + F+
Sbjct 265 LVPPRMMRALYTKCGSEIKRLLEFPGGSHNDTWIVDG--YYQAIGGFL 310
> At5g20520
Length=340
Score = 39.7 bits (91), Expect = 0.001, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query 3 KLVPPSHMDVLYSSCGARLKLREDVE--NGGHNDTWEVGGQSYYNRLREFVQ 52
++VPP HM +LY+ AR VE +G H DTW GG+ Y+ +F++
Sbjct 271 EMVPPFHMKMLYAKAAARNPQCTFVEFPSGMHMDTWLSGGEVYWKTNLQFLE 322
> YNL320w
Length=284
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query 3 KLVPPSHMDVLYSSCGARLKLREDVENGGHNDTWEVGGQSYYNRLREFV 51
++VPP HM LY +C + K + G HNDT + Y++ +R+F+
Sbjct 232 EIVPPFHMRKLYETCPSSNKKIFEFPLGSHNDT--IIQDGYWDIIRDFL 278
> SPBC32H8.03
Length=299
Score = 28.9 bits (63), Expect = 2.2, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query 3 KLVPPSHMDVLYSSCGARLKLREDVENGGHNDTWEVGGQSYYNRLREFV 51
++VPP M +L+ CG+ K HNDT G Y+ + +F+
Sbjct 243 EIVPPPQMVLLFGLCGSAKKKFHSFPKCTHNDT--CLGDGYFQVIADFL 289
> CE18544
Length=195
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query 1 STKLVPPSHMDVLYSSCGARLKLREDVENGGHNDTWEVGGQSYYNRLREF 50
+T P ++ ++ + A++ L +V N G W+ GQ Y+RLR
Sbjct 28 TTDSFPVQYVPTVFDNYSAQMSLDGNVVNLG---LWDTAGQEDYDRLRPL 74
> CE15463
Length=1112
Score = 26.9 bits (58), Expect = 9.4, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 0/47 (0%)
Query 27 VENGGHNDTWEVGGQSYYNRLREFVQVALSASTSSEVSRASGAHSTI 73
V N N+ + GQ +NR+R + + +SSE ++ +GA T+
Sbjct 366 VLNETDNEAYVTNGQFIWNRMRRMKFEGVVSRSSSEENKDAGAIGTV 412
Lambda K H
0.310 0.122 0.346
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1194657780
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40