bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eten_3062_orf1 Length=148 Score E Sequences producing significant alignments: (Bits) Value Hs20536216 126 1e-29 SPBC13E7.01 121 5e-28 At1g80930 115 3e-26 CE17753 96.3 2e-20 YGR278w 71.2 7e-13 > Hs20536216 Length=908 Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 58/106 (54%), Positives = 75/106 (70%), Gaps = 4/106 (3%) Query 2 NKYRSIAAAAA----ADAIPWSVLEVFELSEEQTTSSGRIFLKVLLQEISEGLGIKTLNE 57 NK R++A A D++PWSVLE +LSEE TTSS RIF+K+ QE+ E +G+ LN Sbjct 542 NKLRNVAKMFAHLLYTDSLPWSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNA 601 Query 58 RLRHPDLKPYVKGLFPDDHPRNVRFCINFFTAIGLGGLTDHQRQLL 103 RL+ L+P+ +GL P D+PRN RF INFFT+IGLGGLTD R+ L Sbjct 602 RLKDETLQPFFEGLLPRDNPRNTRFAINFFTSIGLGGLTDELREHL 647 > SPBC13E7.01 Length=628 Score = 121 bits (303), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 63/138 (45%), Positives = 85/138 (61%), Gaps = 12/138 (8%) Query 2 NKYRSIAAAAA----ADAIPWSVLEVFELSEEQTTSSGRIFLKVLLQEISEGLGIKTLNE 57 N+ R+IA A D+I W V + L+E+ TT+S RIFLK++ QEI E LG+K+L E Sbjct 499 NRLRNIALFFANLLSTDSIGWEVYDCVRLTEDDTTASSRIFLKIMFQEIVEALGLKSLVE 558 Query 58 RLRHPDLKPYVKGLFPDDHPRNVRFCINFFTAIGLGGLTDHQRQLLAEMQQQAHLQQQQQ 117 RL P+L PY+ GLFP D RNVRF IN+FT+IGLG LT+ R+ L M + Sbjct 559 RLHDPNLVPYLHGLFPVDEARNVRFSINYFTSIGLGALTEEMREYLLTM--------PKS 610 Query 118 QLQQQSSSSSSSSSSSSS 135 + ++Q S SS S + S Sbjct 611 EPKEQDSEGYSSGSETGS 628 > At1g80930 Length=900 Score = 115 bits (289), Expect = 3e-26, Method: Composition-based stats. Identities = 59/119 (49%), Positives = 82/119 (68%), Gaps = 4/119 (3%) Query 2 NKYRSIAAAAA----ADAIPWSVLEVFELSEEQTTSSGRIFLKVLLQEISEGLGIKTLNE 57 NK R++A A DA+PW VL L+EE TTSS RIF+K+L QE+SE LGI+ LNE Sbjct 737 NKLRNVAKFFAHLLGTDALPWHVLAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNE 796 Query 58 RLRHPDLKPYVKGLFPDDHPRNVRFCINFFTAIGLGGLTDHQRQLLAEMQQQAHLQQQQ 116 RL+ P ++ ++ +FP D+P+N RF INFFT+IGLGG+T++ R+ L M +Q+Q Sbjct 797 RLQDPTMQESLESIFPKDNPKNTRFAINFFTSIGLGGITENLREYLKNMPSLIMQRQKQ 855 > CE17753 Length=897 Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 45/95 (47%), Positives = 60/95 (63%), Gaps = 0/95 (0%) Query 2 NKYRSIAAAAAADAIPWSVLEVFELSEEQTTSSGRIFLKVLLQEISEGLGIKTLNERLRH 61 N R IA + DAI W +L +++EE TTSSGRI++K + E+ E +G+ L+ R+ Sbjct 577 NLARLIAHLLSTDAIDWKILADMKMTEEDTTSSGRIYIKYIFNELVEAMGMVKLHSRVTD 636 Query 62 PDLKPYVKGLFPDDHPRNVRFCINFFTAIGLGGLT 96 P L GLFP +P + RF INFFT IGLGGLT Sbjct 637 PTLAHCFVGLFPRTNPNSARFSINFFTMIGLGGLT 671 > YGR278w Length=577 Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 38/93 (40%), Positives = 55/93 (59%), Gaps = 5/93 (5%) Query 16 IPWSVLEVFELSEEQTTSSGRIFLKVLLQEISEGLGIKTLNERLRHPDLKPYVKGLFP-D 74 +P L++ +L+EE++ GRIF+K L QE+ LG+ L RL L G+FP + Sbjct 397 LPMDCLKIIKLTEEESCPQGRIFIKFLFQELVNELGLDELQLRLNSSKLD----GMFPLE 452 Query 75 DHPRNVRFCINFFTAIGLGGLTDHQRQLLAEMQ 107 ++R+ INFFTAIGLG LT+ R L +Q Sbjct 453 GDAEHIRYSINFFTAIGLGLLTEDMRSRLTIIQ 485 Lambda K H 0.310 0.122 0.325 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1821716300 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40