bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_2999_orf1
Length=105
Score E
Sequences producing significant alignments: (Bits) Value
SPBC4F6.17c 40.8 7e-04
SPBC16D10.08c 39.3 0.002
At2g25140 36.2 0.017
At1g74310 35.0 0.031
At5g15450 34.7 0.045
At2g25030 32.3 0.20
At5g17970 30.0 1.2
At5g51070 29.3 2.0
YDR258c 28.5 2.7
7302710 28.5 2.9
YOR288c 27.3 6.5
> SPBC4F6.17c
Length=803
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 30/47 (63%), Gaps = 0/47 (0%)
Query 2 PAFGARPLKRYLEKHIVSDLSVMLLNGDLGPDHEAIADWSTTEKKWK 48
PA+GARPL R ++K I++ +++ ++ G++ D + D E ++K
Sbjct 744 PAYGARPLNRLIQKRILNTMAMKIIQGEIKSDENVVIDVLDGELEFK 790
> SPBC16D10.08c
Length=905
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 17/57 (29%)
Query 2 PAFGARPLKRYLEKHIVSDLSVMLLNGDL-----------------GPDHEAIADWS 41
PA+GARPL R ++ +++ ++V++LNG L P+HEA A+ S
Sbjct 831 PAYGARPLNRVIQNQVLNPMAVLILNGQLRDKETAHVVVQNGKIFVKPNHEANANGS 887
> At2g25140
Length=874
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 0/54 (0%)
Query 2 PAFGARPLKRYLEKHIVSDLSVMLLNGDLGPDHEAIADWSTTEKKWKWRVTRLH 55
P +GARP+KR +++ + ++++V +L GD + + D K + +L
Sbjct 811 PNYGARPVKRVIQQMVENEIAVGILKGDFAEEDTVLVDVDHLASDNKLVIKKLE 864
> At1g74310
Length=911
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 24/29 (82%), Gaps = 0/29 (0%)
Query 2 PAFGARPLKRYLEKHIVSDLSVMLLNGDL 30
P +GARP++R++EK +V++LS M++ ++
Sbjct 812 PVYGARPIRRWMEKKVVTELSKMVVREEI 840
> At5g15450
Length=968
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 0/42 (0%)
Query 2 PAFGARPLKRYLEKHIVSDLSVMLLNGDLGPDHEAIADWSTT 43
P +GARP+KR ++++I ++L+ +L GD + + D T
Sbjct 894 PNYGARPVKRVIQQNIENELAKGILRGDFKEEDGILIDTEVT 935
> At2g25030
Length=265
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 0/49 (0%)
Query 2 PAFGARPLKRYLEKHIVSDLSVMLLNGDLGPDHEAIADWSTTEKKWKWR 50
P GARP+K+ +EK + ++++ +L GD D + D K +
Sbjct 206 PNNGARPVKQMIEKLVKKEITLKVLKGDFAEDGTILIDADQPNNKLVIK 254
> At5g17970
Length=780
Score = 30.0 bits (66), Expect = 1.2, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query 22 SVMLLNGDLGPDHEAIADWSTTEKKWKWR--VTRLHGVEGQAQNEMDADPSVEAGLPRSI 79
SV GD G + I D T E++ +WR +T + + G+ ++ D D + + +
Sbjct 115 SVRKQTGDFGKAFDKICDVRTEEERQRWRQALTNVGNIAGECSSKWDNDAKMIEKIVAYV 174
Query 80 SE 81
SE
Sbjct 175 SE 176
> At5g51070
Length=945
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 0/42 (0%)
Query 2 PAFGARPLKRYLEKHIVSDLSVMLLNGDLGPDHEAIADWSTT 43
PA+GARPL+R + + + LS L G P A T
Sbjct 881 PAYGARPLRRTVTEIVEDPLSEAFLAGSFKPGDTAFVVLDDT 922
> YDR258c
Length=811
Score = 28.5 bits (62), Expect = 2.7, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 0/27 (0%)
Query 4 FGARPLKRYLEKHIVSDLSVMLLNGDL 30
+GARPL R + + I++ ++ LL G +
Sbjct 752 YGARPLNRLIHRQILNSMATFLLKGQI 778
> 7302710
Length=700
Score = 28.5 bits (62), Expect = 2.9, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query 33 DHEAIADWSTTEKKWKWRVTRLHG-VEGQAQNEMDAD 68
+H + + E KW+WR T L+ EG A N+M +D
Sbjct 150 NHYLHSKYEKDEIKWRWRSTTLNPYYEGNAINQMISD 186
> YOR288c
Length=318
Score = 27.3 bits (59), Expect = 6.5, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 0/36 (0%)
Query 58 EGQAQNEMDADPSVEAGLPRSISESSRTSSYTGRSE 93
E +AQN D+DP + P+S ++ ++YT E
Sbjct 18 EVKAQNFYDSDPHISELTPKSFDKAIHNTNYTSLVE 53
Lambda K H
0.314 0.128 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1170944580
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40