bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_2034_orf2
Length=78
Score E
Sequences producing significant alignments: (Bits) Value
At1g51650 47.8 5e-06
7293142 39.3 0.002
7299301 35.8 0.020
CE00285B 32.0 0.29
CE00285A 32.0 0.29
CE09866 31.2 0.54
ECU06g0660 30.0 1.1
SPBC31F10.15c 29.3 1.9
YPL271w 29.3 2.1
7295834 27.7 4.8
At1g47510 27.7 4.8
> At1g51650
Length=70
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 0/52 (0%)
Query 1 ASTMIWKTCGITYVRYAAEMADLLRKCIKEPYRTQLQNRNRVHFKETIYKQG 52
A+ W+ G+TY+ Y+ A+++R C+KEP++ + R +VHF + + G
Sbjct 5 AAVPFWRAAGMTYISYSNICANIVRNCLKEPHKAEALTREKVHFSLSKWADG 56
> 7293142
Length=61
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 0/54 (0%)
Query 6 WKTCGITYVRYAAEMADLLRKCIKEPYRTQLQNRNRVHFKETIYKQGAVVSRET 59
W+ GITY++Y+ A +LR+ +K R R+ H K T + G R+T
Sbjct 4 WRAAGITYIQYSNIAARILRESLKTGLRADAAKRDASHVKFTPWANGKPAQRQT 57
> 7299301
Length=64
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 0/57 (0%)
Query 6 WKTCGITYVRYAAEMADLLRKCIKEPYRTQLQNRNRVHFKETIYKQGAVVSRETYDK 62
W+ GITY++Y+ A ++R+ ++ R RN H K T + G V R+ ++
Sbjct 4 WRDLGITYIQYSNIAARVVREALRIELRADAAKRNISHVKFTPWVNGKPVPRKKVER 60
> CE00285B
Length=54
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query 6 WKTCGITYVRYAAEMADLLRKCIKEPYRTQLQNRNRVHFKETIYKQGAVVSRE 58
W+ G+ YVRY+ A ++R+C K + + + K T ++ G +VS+
Sbjct 4 WRAAGLNYVRYSQIAAQVVRQCTKGGANVK---KPQATLKTTAWENGKMVSKS 53
> CE00285A
Length=54
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query 6 WKTCGITYVRYAAEMADLLRKCIKEPYRTQLQNRNRVHFKETIYKQGAVVSRE 58
W+ G+ YVRY+ A ++R+C K + + + K T ++ G +VS+
Sbjct 4 WRAAGLNYVRYSQIAAQVVRQCTKGGANVK---KPQATLKTTAWENGKMVSKS 53
> CE09866
Length=54
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 0/25 (0%)
Query 6 WKTCGITYVRYAAEMADLLRKCIKE 30
W+ G+ YVRY+ A++ RKC K+
Sbjct 4 WRAAGLNYVRYSQIAAEITRKCTKQ 28
> ECU06g0660
Length=738
Score = 30.0 bits (66), Expect = 1.1, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 0/35 (0%)
Query 36 LQNRNRVHFKETIYKQGAVVSRETYDKLKAAFEAC 70
+ NR +++ E I + VVS++ YD+ AA C
Sbjct 702 MHNRYKLYLYECIKENAGVVSKDRYDETMAAVNKC 736
> SPBC31F10.15c
Length=67
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query 6 WKTCGITYVRYAAEMADLLRKCIKEPYRTQLQNRNRVHFKETIYKQGAVVSRETYDKLKA 65
WK +Y +YA+ + +R+ +K + +++ F T +K GA E+Y+ K+
Sbjct 5 WKK-NFSYSKYASICSQTVRQALKPEIKNEVKTHGDAEFLYTRWKNGAQEKTESYNSAKS 63
Query 66 A 66
A
Sbjct 64 A 64
> YPL271w
Length=62
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query 6 WKTCGITYVRYAAEMADLLRKCIKEPYRT-QLQNRNRVHFKETIYKQGAVVSRET 59
W+ GI+Y Y A +R +K +T + NR++ T YK G S T
Sbjct 4 WRKAGISYAAYLNVAAQAIRSSLKTELQTASVLNRSQTDAFYTQYKNGTAASEPT 58
> 7295834
Length=184
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query 10 GITYVRYAAEMADLLRKCIKE-PYRTQLQNRNRVHFKETIYK 50
G VR A MA C K P+R++ + NRVH E +K
Sbjct 28 GSECVRSGARMAYKCSHCSKSFPHRSRFEEHNRVHTGERPFK 69
> At1g47510
Length=331
Score = 27.7 bits (60), Expect = 4.8, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query 50 KQGAVVSRETYDKLKAAFEAC--SGTAKKAD 78
K+GAV R YD +K F +C S AKK D
Sbjct 151 KKGAVAIRINYDDIKMVFISCHLSAHAKKVD 181
Lambda K H
0.320 0.129 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1171925608
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40