bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_1418_orf1
Length=213
Score E
Sequences producing significant alignments: (Bits) Value
Hs7661580 38.9 0.007
Hs8922208 38.5 0.010
Hs7706294 38.1 0.012
CE10268 35.0 0.13
7295146 32.7 0.62
7291031 32.3 0.77
At5g06150 28.9 7.7
> Hs7661580
Length=454
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 25/33 (75%), Gaps = 0/33 (0%)
Query 4 HEAPLRSIAFSASASLVAAISSKGSVVRILSVP 36
H++PL ++AF AS + +A S KG+V+R+ S+P
Sbjct 201 HDSPLAALAFDASGTKLATASEKGTVIRVFSIP 233
> Hs8922208
Length=441
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%), Gaps = 3/38 (7%)
Query 2 CT---HEAPLRSIAFSASASLVAAISSKGSVVRILSVP 36
CT HE L +I F+AS S +A+ S KG+V+R+ SVP
Sbjct 175 CTIAAHEGTLAAITFNASGSKLASASEKGTVIRVFSVP 212
> Hs7706294
Length=438
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 25/33 (75%), Gaps = 0/33 (0%)
Query 4 HEAPLRSIAFSASASLVAAISSKGSVVRILSVP 36
H++PL ++AF AS + +A S KG+V+R+ S+P
Sbjct 196 HDSPLAALAFDASGTKLATASEKGTVIRVFSIP 228
> CE10268
Length=412
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 0/41 (0%)
Query 4 HEAPLRSIAFSASASLVAAISSKGSVVRILSVPSLELLLSL 44
HE + + F+ +++A S+KG+V+R+ SVP+ L
Sbjct 187 HEGTIACLKFNQEGNMIATASTKGTVIRVYSVPNGHRLFEF 227
> 7295146
Length=442
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 0/31 (0%)
Query 4 HEAPLRSIAFSASASLVAAISSKGSVVRILS 34
H+ PL ++AFS S + +A S +G+V+R+ S
Sbjct 182 HDTPLAALAFSPSGTEIATASERGTVIRVFS 212
> 7291031
Length=738
Score = 32.3 bits (72), Expect = 0.77, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 53/136 (38%), Gaps = 4/136 (2%)
Query 59 LSMHAADPRSSSSSSTSQSAQAPTAAGASQL--PSKRKEQRKKAEMLEEADAEAVLISGA 116
L D +SSS ++ + + P GA ++ P++ + K+ + + A IS
Sbjct 182 LEQEPTDLKSSSPAAVAGKIELPKDEGAPKVDAPAQNVDAVKEESVPKPEVAANQNISDK 241
Query 117 TEAPAGAPPQQPQQTKQAKGKKQKQKKGGCVGSTTQNSSEGTAGVAPDIVESAATPTASA 176
E P PP + ++A +QKQ++ T + E T + E A
Sbjct 242 QELPP--PPNAAPKVEEAVKSEQKQEEAPAEKDETPSKKEETPAKQVSVEEPKVAAPPLA 299
Query 177 VGVSASPASFGPVAID 192
V A+ S +D
Sbjct 300 VNSPAAAPSLDDTEVD 315
> At5g06150
Length=445
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query 85 GASQLPSKRKEQRK-KAEMLEEADAEAVLISGATEAPAGAPPQQPQQTKQAKGKKQKQKK 143
G +Q P R R +A++L A E I+G + PA P +QP + + ++ QKK
Sbjct 50 GKAQPPINRPITRSFRAQLLANAQLERKPINGDNKVPALGPKRQPLAARNPEAQRAVQKK 109
Query 144 GGCVGSTTQ 152
V T+
Sbjct 110 NLVVKQQTK 118
Lambda K H
0.306 0.119 0.316
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 3897491854
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40