bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_1025_orf1
Length=61
Score E
Sequences producing significant alignments: (Bits) Value
7304131 42.4 2e-04
Hs15321446 40.4 8e-04
At1g51980 35.0 0.034
Hs20535969 33.5 0.11
At3g16480 33.1 0.14
CE27028 31.6 0.41
SPCC613.10 29.6 1.4
> 7304131
Length=556
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 0/41 (0%)
Query 18 ATDIRRVAEKMFSKPPTVVAYGDICSVPHYEEIRAALRAAG 58
A DI+RVA+++ S PP+V A GDI ++P I A+ +G
Sbjct 504 AADIQRVAQRLLSSPPSVAARGDIHNLPEMSHITNAVSGSG 544
> Hs15321446
Length=525
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 0/46 (0%)
Query 11 TLWLKLFATDIRRVAEKMFSKPPTVVAYGDICSVPHYEEIRAALRA 56
TL + D++RVA KM P V A GD+ +P YE I+ AL +
Sbjct 467 TLIRNVKPEDVKRVASKMLRGKPAVAALGDLTDLPTYEHIQTALSS 512
> At1g51980
Length=503
Score = 35.0 bits (79), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 0/41 (0%)
Query 15 KLFATDIRRVAEKMFSKPPTVVAYGDICSVPHYEEIRAALR 55
+L DI K+ SKP T+ ++GD+ +VP Y+ I + R
Sbjct 463 QLTLKDIADFTSKVISKPLTMGSFGDVLAVPSYDTISSKFR 503
> Hs20535969
Length=417
Score = 33.5 bits (75), Expect = 0.11, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 0/35 (0%)
Query 20 DIRRVAEKMFSKPPTVVAYGDICSVPHYEEIRAAL 54
D++RVA K+ P V A G +P Y+ I+ AL
Sbjct 368 DVKRVASKILQGKPVVAALGKSTDLPAYKHIQTAL 402
> At3g16480
Length=448
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 0/41 (0%)
Query 15 KLFATDIRRVAEKMFSKPPTVVAYGDICSVPHYEEIRAALR 55
+L DI K+ +KP T+ +GD+ +VP Y+ + R
Sbjct 408 QLTLKDIADFTSKVITKPLTMATFGDVLNVPSYDSVSKRFR 448
> CE27028
Length=477
Score = 31.6 bits (70), Expect = 0.41, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 0/27 (0%)
Query 15 KLFATDIRRVAEKMFSKPPTVVAYGDI 41
K+ +DI RV E++ + P++V YGDI
Sbjct 428 KVTNSDIIRVTERLLASKPSLVGYGDI 454
> SPCC613.10
Length=426
Score = 29.6 bits (65), Expect = 1.4, Method: Composition-based stats.
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 0/36 (0%)
Query 15 KLFATDIRRVAEKMFSKPPTVVAYGDICSVPHYEEI 50
K+ I +V + +KP + VA G++ +P+Y+E+
Sbjct 391 KVTPASISKVVSSLLAKPASTVAVGNLDVLPYYDEL 426
Lambda K H
0.323 0.134 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1178852562
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40