bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eten_0882_orf2 Length=101 Score E Sequences producing significant alignments: (Bits) Value Hs5174553 72.0 3e-13 At4g08580 67.8 5e-12 At5g17900 67.4 6e-12 CE10372 53.1 1e-07 7292185 51.2 4e-07 SPAC1782.03 32.3 0.23 At5g56660 28.5 2.8 > Hs5174553 Length=439 Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 40/91 (43%), Positives = 54/91 (59%), Gaps = 7/91 (7%) Query 9 EPLYLWDFNAPVGEDKVDKKTLPKILQLRRGELARGGRSKHTHLVDVDTSDLSHPWAQAT 68 E +Y DF+AP ED +K LPK++Q++ R GR+K+THLVD DT+ W Q + Sbjct 353 EEVYKRDFSAPTLEDHFNKTILPKVMQVK--NFGRSGRTKYTHLVDQDTTSFDSAWGQES 410 Query 69 RDLQGQKLLK-KAAGIKGANDFERPSLRKPK 98 Q K K KAAG++ FERPS +K K Sbjct 411 --AQNTKFFKQKAAGVRDV--FERPSAKKRK 437 > At4g08580 Length=435 Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 34/78 (43%), Positives = 52/78 (66%), Gaps = 4/78 (5%) Query 6 SGEEPLYLWDFNAPVGEDKVDKKTLPKILQLRRGELARGGRSKHTHLVDVDTSDLSHPWA 65 +G + ++ DF+AP GED++DK LPK++Q++ R GR+K THLV+ DT+D S+PW Sbjct 344 AGTDGIFQRDFSAPTGEDRLDKSILPKVMQVK--HFGRSGRTKWTHLVNEDTTDWSNPW- 400 Query 66 QATRDLQGQKLLKKAAGI 83 + D +K KK AG+ Sbjct 401 -TSNDPLREKYNKKMAGM 417 > At5g17900 Length=435 Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 34/78 (43%), Positives = 52/78 (66%), Gaps = 4/78 (5%) Query 6 SGEEPLYLWDFNAPVGEDKVDKKTLPKILQLRRGELARGGRSKHTHLVDVDTSDLSHPWA 65 +G + ++ DF+AP GED++DK LPK++Q++ R GR+K THLV+ DT+D S+PW Sbjct 344 AGTDGIFQRDFSAPTGEDRLDKSILPKVMQVK--HFGRSGRTKWTHLVNEDTTDWSNPW- 400 Query 66 QATRDLQGQKLLKKAAGI 83 + D +K KK AG+ Sbjct 401 -TSNDPLREKYNKKMAGM 417 > CE10372 Length=466 Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 5/84 (5%) Query 15 DFNAPVGEDKVDKKTLPKILQLRRGELARGGRSKHTHLVDVDTSDLSHPWAQATRDLQGQ 74 +F +D+ DK LPK++Q++ + R+K+THL + DT+D WA +T L Q Sbjct 387 NFAEATNDDQFDKTILPKVMQVK--NFGKASRTKYTHLTEEDTTDHQGVWA-STNQLNSQ 443 Query 75 KLLKKAAGIKGANDFERPSLRKPK 98 K+A G + FERP+ +K K Sbjct 444 FSTKRAGGSRPV--FERPATKKRK 465 > 7292185 Length=478 Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 2/50 (4%) Query 15 DFNAPVGEDKVDKKTLPKILQLRRGELARGGRSKHTHLVDVDTSDLSHPW 64 DF ED DK LPK++Q++ R GR+K+THLVD DT+ PW Sbjct 397 DFAQATLEDHFDKTILPKVMQVK--NFGRCGRTKYTHLVDQDTTKFDSPW 444 > SPAC1782.03 Length=355 Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust. Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 0/50 (0%) Query 15 DFNAPVGEDKVDKKTLPKILQLRRGELARGGRSKHTHLVDVDTSDLSHPW 64 D++ + ++K LPK +Q+R A+ G+++ THL + DT+ W Sbjct 276 DYSEATEGEVLNKDLLPKPMQIRGDLFAKAGQTRWTHLANEDTTKEGSAW 325 > At5g56660 Length=439 Score = 28.5 bits (62), Expect = 2.8, Method: Composition-based stats. Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 0/35 (0%) Query 55 VDTSDLSHPWAQATRDLQGQKLLKKAAGIKGANDF 89 V+ DL + + RDL GQ+ +AA + G+ DF Sbjct 336 VNNKDLYKQFKKVVRDLLGQEAFVEAAPVMGSEDF 370 Lambda K H 0.313 0.133 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1184494980 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40