bitscore colors: <40, 40-50 , 50-80, 80-200, >200

BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_0213_orf3
Length=190
Score E
Sequences producing significant alignments: (Bits) Value
At2g03820 32.3 0.61
YHR170w 31.6 1.0
SPAC16C9.03 30.4 2.2
Hs14165274 28.5 7.8
> At2g03820
Length=516
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 20/26 (76%), Gaps = 0/26 (0%)
Query 46 DEDMEEFRKDLEDDAELRKQVLLYKD 71
D++ EEF +DLE++ ELR + LY+D
Sbjct 444 DKEYEEFLRDLEENPELRFNISLYRD 469
> YHR170w
Length=518
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 21/26 (80%), Gaps = 0/26 (0%)
Query 46 DEDMEEFRKDLEDDAELRKQVLLYKD 71
++D E F ++LE+DAELR+ V LYK+
Sbjct 443 EKDYELFLQELEEDAELRQSVNLYKN 468
> SPAC16C9.03
Length=498
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query 45 EDEDMEEFRKDLEDDAELRKQVLLYKDPRISYTKATGAA 83
++ D E F ++LE+D ELR+ V LYK P KA A
Sbjct 433 QERDYELFLQNLEEDPELRQGVNLYKAP----VKAIAVA 467
> Hs14165274
Length=718
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 0/70 (0%)
Query 49 MEEFRKDLEDDAELRKQVLLYKDPRISYTKATGAAKIRVGSSSTSSKQQQGLKRREANKA 108
+E ++K LED +LR+QV L ++ Y + T + + + ++ + Q + KR+
Sbjct 320 VESYKKKLEDLGDLRRQVKLLEEKNTMYMQNTVSLEEELRKANAARSQLETYKRQVVELQ 379
Query 109 RKLAEAHDRA 118
+L+E +A
Sbjct 380 NRLSEESKKA 389
Lambda K H
0.305 0.126 0.340
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 3166472848
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40