bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_0171_orf1
Length=50
Score E
Sequences producing significant alignments: (Bits) Value
YIL070c 38.1 0.004
SPBC776.07 37.4 0.007
At3g55600_2 37.0 0.008
At5g02050 36.6 0.011
At1g15870 32.7 0.17
At2g39790 32.0 0.26
At4g32610 31.2 0.45
At5g05990 30.4 0.84
At1g80720 29.6 1.3
CE17940 28.5 3.3
> YIL070c
Length=266
Score = 38.1 bits (87), Expect = 0.004, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 0/39 (0%)
Query 7 SWLAAVGVDGQLCDFLEAFAADKENREYLRWLHKVHAFL 45
++L + GV+ +L F+ A++ KEN EY+ WL K+ F
Sbjct 227 AYLESRGVNEELASFISAYSEFKENNEYISWLEKMKKFF 265
> SPBC776.07
Length=269
Score = 37.4 bits (85), Expect = 0.007, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 0/40 (0%)
Query 6 HSWLAAVGVDGQLCDFLEAFAADKENREYLRWLHKVHAFL 45
HS+L +D L F+ +F KE +EY+ WL V FL
Sbjct 229 HSYLEERKIDESLSSFIVSFGLTKELKEYINWLESVRQFL 268
> At3g55600_2
Length=248
Score = 37.0 bits (84), Expect = 0.008, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 0/40 (0%)
Query 6 HSWLAAVGVDGQLCDFLEAFAADKENREYLRWLHKVHAFL 45
H +L G+ DFL + K++REYL WL K+ F+
Sbjct 207 HKFLETRGIKASATDFLYEYMMKKDSREYLLWLKKLKTFV 246
> At5g02050
Length=267
Score = 36.6 bits (83), Expect = 0.011, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 0/40 (0%)
Query 6 HSWLAAVGVDGQLCDFLEAFAADKENREYLRWLHKVHAFL 45
H +L G+ FL + A+K++REYL+WL + +F+
Sbjct 226 HRYLEIRGIKPSFTTFLADYVANKDSREYLQWLKDLKSFV 265
> At1g15870
Length=190
Score = 32.7 bits (73), Expect = 0.17, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 0/40 (0%)
Query 6 HSWLAAVGVDGQLCDFLEAFAADKENREYLRWLHKVHAFL 45
+ +L G+ L +FL + +K+ EY+RW+ V +++
Sbjct 148 YRFLEERGISDDLAEFLHQYMKNKDKAEYIRWMETVKSYV 187
> At2g39790
Length=429
Score = 32.0 bits (71), Expect = 0.26, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 0/40 (0%)
Query 6 HSWLAAVGVDGQLCDFLEAFAADKENREYLRWLHKVHAFL 45
+ +L GV +FL + K NREY WL V F+
Sbjct 388 YKFLEIRGVKASTTNFLHEYMTRKVNREYFLWLKNVKEFM 427
> At4g32610
Length=557
Score = 31.2 bits (69), Expect = 0.45, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query 6 HSWLAAVGVDGQLCDFLEAFAADKENREYLRWLHKVHAFL-ANP 48
H +L GV+ L FL+A+ K++R LRW V F+ NP
Sbjct 508 HGFLEERGVNESLFPFLQAWLYVKDHRNLLRWFKSVGTFVHENP 551
> At5g05990
Length=259
Score = 30.4 bits (67), Expect = 0.84, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 0/40 (0%)
Query 6 HSWLAAVGVDGQLCDFLEAFAADKENREYLRWLHKVHAFL 45
H ++ G+ + +FL + +K++RE+L WL + F+
Sbjct 218 HRYIEIRGIKPSMINFLHEYMINKDSREHLLWLKSLKNFV 257
> At1g80720
Length=190
Score = 29.6 bits (65), Expect = 1.3, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 0/40 (0%)
Query 6 HSWLAAVGVDGQLCDFLEAFAADKENREYLRWLHKVHAFL 45
+ +L G+ +L FL + +K EY+RW+ V +++
Sbjct 148 YQFLEERGISDELAVFLHRYMKNKGKAEYVRWMESVKSYV 187
> CE17940
Length=236
Score = 28.5 bits (62), Expect = 3.3, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 0/39 (0%)
Query 8 WLAAVGVDGQLCDFLEAFAADKENREYLRWLHKVHAFLA 46
+L G+D + C L A+A E+ +Y+ L K+ F++
Sbjct 197 YLEERGLDARFCKTLVAYATHYEHSQYVGLLDKIKKFIS 235
Lambda K H
0.323 0.137 0.462
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1164550556
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40