bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_0099_orf1
Length=101
Score E
Sequences producing significant alignments: (Bits) Value
At1g11350 31.6 0.38
Hs10835151 30.4 0.81
Hs14733520 30.4 0.87
CE02826 29.6 1.3
7291798 28.9 2.5
7300692 28.5 3.2
Hs10835169 28.1 4.0
> At1g11350
Length=830
Score = 31.6 bits (70), Expect = 0.38, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 22/100 (22%)
Query 8 ASAARSIEATSYAGCSCT----VSSQGAAF--DANVSIIQW------------TNTTCFE 49
+S R + SYAG + + S+G+ F D NV+I +W T TC +
Sbjct 236 SSDNRGSVSMSYAGNTLLYHFLLDSEGSVFQRDWNVAIQEWKTWLKVPSTKCDTYATCGQ 295
Query 50 QGLSKMLPSYSLPFKGSLALRCGFAPQSIAQWGNELMAEG 89
+ P + P + +R GF PQS A+W N +G
Sbjct 296 FASCRFNPGSTPP---CMCIR-GFKPQSYAEWNNGNWTQG 331
> Hs10835151
Length=550
Score = 30.4 bits (67), Expect = 0.81, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 0/37 (0%)
Query 63 FKGSLALRCGFAPQSIAQWGNELMAEGSAGTCKTTYA 99
++G + L C F P ++ W L+A G + T TYA
Sbjct 346 YQGGVILGCLFGPAALYIWAIGLLAAGQSSTMTGTYA 382
> Hs14733520
Length=550
Score = 30.4 bits (67), Expect = 0.87, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 0/37 (0%)
Query 63 FKGSLALRCGFAPQSIAQWGNELMAEGSAGTCKTTYA 99
++G + L C F P ++ W L+A G + T TYA
Sbjct 346 YQGGVILGCLFGPAALYIWAIGLLAAGQSSTMTGTYA 382
> CE02826
Length=557
Score = 29.6 bits (65), Expect = 1.3, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 0/46 (0%)
Query 53 SKMLPSYSLPFKGSLALRCGFAPQSIAQWGNELMAEGSAGTCKTTY 98
+ + P+ + P +G + L C F ++ WG + A G + T TY
Sbjct 329 ADIFPNNTEPVEGGIYLGCQFGAIAMFIWGIGIFAAGQSSTMTGTY 374
> 7291798
Length=1436
Score = 28.9 bits (63), Expect = 2.5, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 0/30 (0%)
Query 38 SIIQWTNTTCFEQGLSKMLPSYSLPFKGSL 67
SI Q TN+T F++ M PSY+ P SL
Sbjct 1281 SIFQLTNSTDFQRRRISMDPSYAYPVTTSL 1310
> 7300692
Length=486
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 0/37 (0%)
Query 63 FKGSLALRCGFAPQSIAQWGNELMAEGSAGTCKTTYA 99
+KG L L C F ++ WG ++A G + T TYA
Sbjct 369 YKGGLFLGCTFGAVAMYIWGVGILAAGQSSTMTGTYA 405
> Hs10835169
Length=561
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 0/37 (0%)
Query 63 FKGSLALRCGFAPQSIAQWGNELMAEGSAGTCKTTYA 99
+KG + L C F P ++ W ++A G + T TY+
Sbjct 357 YKGGVVLGCYFGPAALYIWAVGILAAGQSSTMTGTYS 393
Lambda K H
0.316 0.125 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1184494980
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40