bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_8119_orf2 Length=97 Score E Sequences producing significant alignments: (Bits) Value 3702.AT3G46100.1 68.6 5e-11 > 3702.AT3G46100.1 Length=486 Score = 68.6 bits (166), Expect = 5e-11, Method: Composition-based stats. Identities = 31/70 (44%), Positives = 46/70 (65%), Gaps = 2/70 (2%) Query 1 HIYRLHVSGPDPLCLRPEITPSLARMLQREQQQQPSGIARRWYSIERVWRHERPGCGRRR 60 +Y G + LRPE+TPSLAR++ Q+ + + +W++I + WR+ER GRRR Sbjct 127 QLYCFEDRGNRRVALRPELTPSLARLVI--QKGKSVSLPLKWFAIGQCWRYERMTRGRRR 184 Query 61 EHFQWNLDII 70 EH+QWN+DII Sbjct 185 EHYQWNMDII 194 Lambda K H 0.321 0.138 0.466 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22472223870 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40