bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_6440_orf1 Length=148 Score E Sequences producing significant alignments: (Bits) Value 5833.PF11_0395 84.3 9e-16 > 5833.PF11_0395 Length=4226 Score = 84.3 bits (207), Expect = 9e-16, Method: Composition-based stats. Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 0/88 (0%) Query 20 DVSMDSNSSGVSFEGDKHRDRVKLVKVSHLINRFSLKFKDMQLEADYQIHQKKSFVKRLV 79 + S S++S ++ + + ++VKVSHLINRF+L FKDMQLE+ +QIH+K F K Sbjct 2731 EFSYTSSNSSINNKKKNENTQKEIVKVSHLINRFTLAFKDMQLESGFQIHKKNKFYKTFT 2790 Query 80 PWYRVIFVFLGLYRIVAFLAEYFIDAYW 107 PWYR IF+ LG++ + + E + W Sbjct 2791 PWYRFIFLLLGVFFLYVWKLESSLSQLW 2818 Lambda K H 0.326 0.142 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22943761524 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40