bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_6291_orf1 Length=119 Score E Sequences producing significant alignments: (Bits) Value 5833.PF07_0035 90.5 1e-17 > 5833.PF07_0035 Length=1248 Score = 90.5 bits (223), Expect = 1e-17, Method: Composition-based stats. Identities = 39/90 (43%), Positives = 54/90 (60%), Gaps = 3/90 (3%) Query 11 LEALPKEAVEVLAEGRNLDSFGLAKYIRKRVSVEEPKFKVGEIVRHRWWQYTAVVLSWDT 70 EA+PK+ + + FGL Y+RKR+ P F +G +VRH++W Y AVV+SWD Sbjct 999 FEAIPKDTEIIFGKKY---YFGLGNYVRKRIYKSIPIFHIGNVVRHKYWNYQAVVISWDY 1055 Query 71 SCMANNDWSSKVYAVYPQSVLQTPHYLLLV 100 SC A N+W K ++ YP T HYLLL+ Sbjct 1056 SCFAPNEWKKKSFSEYPPEFQNTVHYLLLI 1085 Lambda K H 0.316 0.129 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22381075488 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40