bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_6168_orf1 Length=83 Score E Sequences producing significant alignments: (Bits) Value 3702.AT5G46180.1 68.2 8e-11 > 3702.AT5G46180.1 Length=475 Score = 68.2 bits (165), Expect = 8e-11, Method: Composition-based stats. Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 3/73 (4%) Query 9 EWIRDIRGRGLFNAVEINGSS---GEAMQLCIELKNEGVLCRPTRGNVLRFLPPLCIDEA 65 ++I+++RGRGLFNA+E N S A +C+ LK GVL +PT ++R PPL I Sbjct 371 KYIKEVRGRGLFNAIEFNSESLSPVSAYDICLSLKERGVLAKPTHNTIVRLTPPLSISSD 430 Query 66 QMKDALQRIQDVF 78 +++D + + DV Sbjct 431 ELRDGSEALHDVL 443 Lambda K H 0.324 0.140 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22659344793 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40