bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_6059_orf1 Length=110 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd8_3280 103 2e-21 > 5807.cgd8_3280 Length=828 Score = 103 bits (256), Expect = 2e-21, Method: Composition-based stats. Identities = 55/123 (44%), Positives = 73/123 (59%), Gaps = 13/123 (10%) Query 1 AFFMRSVLFDYYKHVSTCSNTMLTRLCGLHAIRLKDKSGQIMG---------GKEPWRR- 50 A F RS+L Y+ H+ + N+++TR+ GLHA+R K Q G R+ Sbjct 587 AVFFRSILSKYFNHIKSNQNSLITRIYGLHALRFKKPLLQPFNTIREQISSNGNSILRKS 646 Query 51 ---KTYFMVMENFFHTPVEIHRRYDLKGSTQGRSLPPELRSDPTVARKDNDMARDGEMIE 107 K +F+VMEN FHTPVEIHRRYD+KGS GRS P L+ D T+A K+ DM + EM+ Sbjct 647 KIHKIFFIVMENIFHTPVEIHRRYDIKGSWIGRSTPLILQEDKTIALKELDMKNNKEMLH 706 Query 108 IGQ 110 I Q Sbjct 707 INQ 709 Lambda K H 0.324 0.138 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 23096258976 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40