bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_5891_orf1 Length=116 Score E Sequences producing significant alignments: (Bits) Value 10116.ENSRNOP00000003914 90.9 1e-17 > 10116.ENSRNOP00000003914 Length=491 Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 44/102 (43%), Positives = 62/102 (60%), Gaps = 2/102 (1%) Query 6 LDSLMGRDRNEYGANAKKGASFKADSVCKFYLLDFCPLDLFPNTRVDLGPCDREHRADLK 65 LD LMGRDRN + + +SVCK+YL FCP +LF NTR DLGPC++ H +L+ Sbjct 8 LDELMGRDRNLAPDEKRSNVRWDHESVCKYYLCGFCPAELFTNTRSDLGPCEKIHDENLR 67 Query 66 VAFETDPEREFYQALFETEFARYLQRLVDQMENRIKRVQQRI 107 +E F + +E +F RYLQ L+ ++E RI+R R+ Sbjct 68 KQYEKSS--RFMKVGYERDFLRYLQSLLAEVERRIRRGHARL 107 Lambda K H 0.323 0.138 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22619469984 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40