bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_5516_orf2 Length=110 Score E Sequences producing significant alignments: (Bits) Value 31033.SINFRUP00000177585 81.3 8e-15 > 31033.SINFRUP00000177585 Length=2880 Score = 81.3 bits (199), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 45/87 (51%), Positives = 58/87 (66%), Gaps = 5/87 (5%) Query 1 HTCSTHATCTNTAGSFTCECNPGFDGDGHKCEDVDFCGQGLHDCNVHAECSESDDNTTFK 60 H C HATCTNTAGSF C+C PG+ GDG KC D+D C G H CN +AEC + +++ Sbjct 1453 HNCDGHATCTNTAGSFKCDCAPGWIGDGFKCTDLDECSNGTHKCNNNAECHNTLG--SYR 1510 Query 61 CTCGIGYSGEGHGENGCQDIDECAQDA 87 CTC G+SG+G C D DECA+++ Sbjct 1511 CTCKEGFSGDGF---FCSDSDECAENS 1534 Lambda K H 0.318 0.132 0.455 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 23096258976 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40