bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_5495_orf3 Length=128 Score E Sequences producing significant alignments: (Bits) Value 5833.PF13_0091 62.0 4e-09 > 5833.PF13_0091 Length=906 Score = 62.0 bits (149), Expect = 4e-09, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 44/61 (72%), Gaps = 0/61 (0%) Query 67 EILESDRRWSCFSILTRGERKQTFAEFMGSRGKRAAEEERQKRKKAKDLMVQNLLAWKEL 126 +ILE+D RWS ILT+GE+KQ F E++ KR E ER+KR+K+++++ Q LL W +L Sbjct 464 KILEADNRWSSLVILTKGEKKQLFCEYISHVIKRNNENERRKRQKSREIIFQTLLNWDKL 523 Query 127 S 127 + Sbjct 524 N 524 Lambda K H 0.322 0.132 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22424899233 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40