bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_5479_orf1 Length=133 Score E Sequences producing significant alignments: (Bits) Value 7955.ENSDARP00000076578 90.9 9e-18 > 7955.ENSDARP00000076578 Length=752 Score = 90.9 bits (224), Expect = 9e-18, Method: Composition-based stats. Identities = 57/135 (42%), Positives = 76/135 (56%), Gaps = 14/135 (10%) Query 1 AGTRLSSSNFNPTTSWNFGCQIVALNLQGFNLATMLNHGRFLENGGNEGGYVLKPPLLRS 60 AG+R SSN+NP WN GCQIVALN Q LN RFL NG + GY+LKP LR Sbjct 547 AGSRTDSSNYNPVPLWNAGCQIVALNFQTPCKEMDLNQARFLPNG--KSGYILKPEFLRD 604 Query 61 PLRPFDA--LREMP-SEAEALHFTIKVVAASQLPRPPGTSLNKLAARNKSLHAPFISLSI 117 P FD LR+ P + + LH I V++A QLP+ +NK + KS+ P + + I Sbjct 605 PASQFDPINLRKGPWLQKKVLH--IMVISAQQLPK-----INK--NKEKSIVDPHVRVEI 655 Query 118 HGARRDTCSFRTRAV 132 +G +D S +T + Sbjct 656 YGVPQDNASKQTHHI 670 Lambda K H 0.320 0.134 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22766716098 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40