bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_5430_orf4 Length=149 Score E Sequences producing significant alignments: (Bits) Value 5833.PF11_0303 121 5e-27 > 5833.PF11_0303 Length=380 Score = 121 bits (304), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 55/123 (44%), Positives = 85/123 (69%), Gaps = 0/123 (0%) Query 25 YRVAYAKTVGIGSRLDLILTLLRTGIVYKDRDLVKKQLFLAKQEMEKGGDWERRNKLKVI 84 Y Y K +G+G +LD++LT++R I Y D +KK L A+ +MEKGGDWER+NKLK+ Sbjct 128 YEETYKKGIGMGMKLDILLTMIRICIFYNDVKNLKKYLEQARTQMEKGGDWERKNKLKIY 187 Query 85 EALDFILSRNFTEASKLLLEVLATFPSCGIISFETFVFYAALLALLCCDRQTLKEQVVFS 144 EAL++I+ RNF EASK+L++ +TF + IIS+E +FY +L ++ +R L ++++ S Sbjct 188 EALNYIMIRNFAEASKILIDAASTFTATEIISYEKIIFYVVILGIMTEERTVLDKKILNS 247 Query 145 PTI 147 I Sbjct 248 SVI 250 Lambda K H 0.324 0.138 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22854363588 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40