bitscore colors: <40, 40-50 , 50-80, 80-200, >200

BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: eggV2
2,483,276 sequences; 915,453,621 total letters
Query= Eten_5381_orf1
Length=69
Score E
Sequences producing significant alignments: (Bits) Value
5833.PF13_0061 69.7 2e-11
> 5833.PF13_0061
Length=311
Score = 69.7 bits (169), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/66 (50%), Positives = 48/66 (72%), Gaps = 0/66 (0%)
Query 1 EFEPELIDIWKDLQQFALACCFHGCMLNAIAAEQAARMTAMEGASSNAAEMLSSLRLSFN 60
EFEPE+ I+KD+ QF + ++ +A+EQ+ARMTAM+ ASS+A +ML++L L +N
Sbjct 231 EFEPEMDYIFKDIYQFYFTSILYNSIIQNLASEQSARMTAMDNASSSATDMLNALSLRYN 290
Query 61 RARQPK 66
RARQ K
Sbjct 291 RARQSK 296
Lambda K H
0.322 0.128 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 22781900540
Database: eggV2
Posted date: Dec 15, 2009 4:47 PM
Number of letters in database: 915,453,621
Number of sequences in database: 2,483,276
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40