bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_5118_orf1 Length=124 Score E Sequences producing significant alignments: (Bits) Value 5833.PF14_0339 124 6e-28 > 5833.PF14_0339 Length=504 Score = 124 bits (312), Expect = 6e-28, Method: Composition-based stats. Identities = 55/122 (45%), Positives = 86/122 (70%), Gaps = 2/122 (1%) Query 5 PLILCLNKIDLASHPKWIHAREKEFLSHGQFQNTFHISAKYKRGTDSLLDYLVS-EAIPR 63 P+IL LNK+DL +H KW +AR KE++++G F N F ISAKY +G + LL+Y++ + + Sbjct 337 PVILVLNKVDLCTHNKWANARAKEYMNNGIFDNIFFISAKYNKGIEELLNYIIKYKTKNQ 396 Query 64 PWAFPSEMRTSLSKVEQVEEFIRTYLFCWFNKDVPYRIDQQTVGWTYR-DGYVVIEHELV 122 W +P + T+LSKV+ VE+ I TY++CWFNKDVPY++ + W D ++IE++++ Sbjct 397 YWVYPKDAITTLSKVQIVEQLINTYIYCWFNKDVPYKVKHHMLSWCVNLDNSLIIEYQII 456 Query 123 VK 124 VK Sbjct 457 VK 458 Lambda K H 0.324 0.139 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22752691665 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40