bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_5094_orf1 Length=83 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd1_3730 109 2e-23 > 5807.cgd1_3730 Length=696 Score = 109 bits (272), Expect = 2e-23, Method: Composition-based stats. Identities = 49/75 (65%), Positives = 59/75 (78%), Gaps = 1/75 (1%) Query 9 YDSCGMTTIGGDGQLTTTKFASRGTTSDCIQLLKREAPSQHGGHHIGIAHTRWATHGGKT 68 YDSCGM+TI G+L TTK++S+ + D I+ LK ++ HG HHIGIAHTRWATHGGKT Sbjct 111 YDSCGMSTIDDQGELITTKYSSK-ESGDSIERLKNDSELLHGNHHIGIAHTRWATHGGKT 169 Query 69 DTNAHPHMDWKKRIS 83 D NAHPH D+KKRIS Sbjct 170 DFNAHPHQDYKKRIS 184 Lambda K H 0.316 0.132 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22659344793 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40