bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_4947_orf1 Length=189 Score E Sequences producing significant alignments: (Bits) Value 3702.AT5G66380.1 90.5 2e-17 > 3702.AT5G66380.1 Length=308 Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 84/187 (44%), Gaps = 13/187 (6%) Query 3 AGASGAAALLTCCALHSFDLIKTRMQVAAVTGGAIPLYGSTKSAVVRIYKQEGLRGLWKG 62 A A A T A+HS D+++TR QV G ++P Y +T AV I + EGLRGL+ G Sbjct 10 ATAGAVAGFATVAAMHSLDVVRTRFQVNDGRGSSLPTYKNTAHAVFTIARLEGLRGLYAG 69 Query 63 IGVTAFASWTSWTCFRYVFDQLSLSLPGWRESVFGNSDKPNGVAQRTSLDDMASGLVAGV 122 S SW + + + + + G D+ A +AS AG Sbjct 70 FFPAVIGSTVSWGLYFFFYGRAK------QRYARGRDDEKLSPALH-----LASAAEAGA 118 Query 123 LVTCLTHPLWLAKARMEMQAKEAEVAGWPLFHSGFSCIVSVARGGVRESYKGIGPALALA 182 LV T+P+WL K R+++Q + + F IV G R YKGI P L L Sbjct 119 LVCLCTNPIWLVKTRLQLQTPLHQTQPYSGLLDAFRTIVK--EEGPRALYKGIVPGLVLV 176 Query 183 PHAAIQI 189 H AIQ Sbjct 177 SHGAIQF 183 Lambda K H 0.322 0.134 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 41818451300 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40