bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_4640_orf3 Length=117 Score E Sequences producing significant alignments: (Bits) Value 5833.PF11_0272 122 4e-27 > 5833.PF11_0272 Length=156 Score = 122 bits (305), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 55/87 (63%), Positives = 67/87 (77%), Gaps = 0/87 (0%) Query 30 QIVAIVGSPTQFSIPSWFLTRQKDVKDGKSPPVSANNLDSFWREDFERLKKMRLPRGLRP 89 IV I+ +PTQF IP WFL R+KD+K+GK+ V AN LDS+ RED ER+KK+RL RGLR Sbjct 68 NIVHIMSTPTQFKIPDWFLNRRKDLKEGKNIHVIANQLDSYLREDLERMKKIRLHRGLRH 127 Query 90 YWGLKVRGRPPKTPGRPGGPVGVAKKK 116 +WGL+VRG+ KT GR G VGVAKKK Sbjct 128 HWGLRVRGQHTKTTGRRGRTVGVAKKK 154 Lambda K H 0.321 0.138 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22540005152 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40