bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_4330_orf3 Length=102 Score E Sequences producing significant alignments: (Bits) Value 4952.YALI0B15103g 84.0 1e-15 > 4952.YALI0B15103g Length=171 Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 42/75 (56%), Positives = 49/75 (65%), Gaps = 0/75 (0%) Query 28 PTRKNRSEKRTTNNGAGETGDRPTRAAREPEQRTGQRPAQTRARKTSRTDSKRRNEKNAR 87 P R+ R EK T N GE+GDR TRAA+ EQ +GQ P T+AR T R+ S RRNEK A Sbjct 7 PMRELRIEKLTLNICVGESGDRLTRAAKVLEQLSGQTPVYTKARYTIRSFSIRRNEKIAV 66 Query 88 HETARGKKAEETEEK 102 H T RG KAEE E+ Sbjct 67 HVTVRGPKAEEILER 81 Lambda K H 0.297 0.114 0.301 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22913371775 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40