bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_4236_orf1 Length=263 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd3_1400 80.5 5e-14 > 5807.cgd3_1400 Length=1327 Score = 80.5 bits (197), Expect = 5e-14, Method: Composition-based stats. Identities = 50/129 (38%), Positives = 70/129 (54%), Gaps = 21/129 (16%) Query 124 PIACENT--HKLIRDAAGAFALGFDTQTKAAAELVGNLMTDSNSAAKYFYFCKVGGGRGA 181 P+ EN+ H++I +GFD+ TK+ + LVGNL+TDS SA KY+YF K+ G + + Sbjct 841 PVCLENSISHQMIETC-----IGFDSVTKSISTLVGNLLTDSASATKYWYFMKMIGDKTS 895 Query 182 EA--EVAMQTHPNMALISTLYADSQPV------------QIAEXIADCVAARCAQKKNFG 227 EV +QTHPN+ +I YAD + I I D + R Q NFG Sbjct 896 NVALEVGIQTHPNLVVIPERYADGKLSVYGSEMAGVTLDDIITEICDIICLRSNQGNNFG 955 Query 228 VLLLNEDLF 236 LL++E LF Sbjct 956 GLLVSEGLF 964 Lambda K H 0.319 0.132 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 82550835765 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40