bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_4192_orf1 Length=267 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd6_560 113 5e-24 > 5807.cgd6_560 Length=1003 Score = 113 bits (283), Expect = 5e-24, Method: Composition-based stats. Identities = 83/245 (33%), Positives = 125/245 (51%), Gaps = 16/245 (6%) Query 29 LRTAMELPALCAVFGEAYPDPVRVVTIGPDTKELQKIQETQGADKVSSSVELCGGTHLSN 88 L A ++P + A+FGE YPDPVRV+++ L Q T D+ S+E CGGTH+ N Sbjct 707 LSIAKQIPNIRAIFGETYPDPVRVLSVSKSVDSLINSQ-TDNNDQEKVSIEFCGGTHVEN 765 Query 89 AAQLEDFVVISEESIAKGVRRIVAVA---GEAAISARSELRDVCLSLSNLESASPAFPFF 145 +++ F +ISEE IAKG+RRIVAV E AI L+ L L Sbjct 766 TSEIISFSIISEEGIAKGIRRIVAVTDNQSEIAIENAKRLKQEFKKLEELNGKE-----L 820 Query 146 EKEVQQAKAFVESNKMIPLLSRRRLLADLENKQKLGLELGKFRAKELLRVGK----LSGQ 201 E + K+ ++ K++PLL RR+L +E K + K + KE L + K GQ Sbjct 821 ETLLNSFKSKLDETKLLPLLYRRQLSQIIEENYKRVIADAKKKQKERLNMAKELATKIGQ 880 Query 202 EAAAAAAAEGK-KFIVLNLEQLQGDGKALDEAAKALQSAAPSLPFLLLTXLE--SRGSSC 258 E + ++ + ++LN++Q+QGD K++D + + P P +L T E G S Sbjct 881 EYSQQLSSNNEFPALILNIKQIQGDSKSMDVIGQDISKKYPEAPIMLFTSGEFNDNGVSV 940 Query 259 IXLSP 263 I + P Sbjct 941 ISIMP 945 Lambda K H 0.317 0.132 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 84961079145 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40