bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_4089_orf1 Length=240 Score E Sequences producing significant alignments: (Bits) Value 3702.AT3G21280.1 140 3e-32 > 3702.AT3G21280.1 Length=532 Score = 140 bits (354), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 89/222 (40%), Positives = 127/222 (57%), Gaps = 22/222 (9%) Query 19 AVKWGAKSF-NVQIDPNEPLEVFQAQLYTLTGVPVERQKLLCKGKTIKVDADLQALVSSG 77 +VKW K F +++ID ++P VF+AQLY L+GVP ERQK++ KG +K DAD L Sbjct 60 SVKWQKKVFESIEIDTSQPPFVFKAQLYDLSGVPPERQKIMVKGGLLKDDADWSTLGLKN 119 Query 78 CPKIMLMGTAEEKTAVKPPPEKTVFVEDLTPAQQAALLKEKKVEPLPNGIVNLGNTCYLA 137 K+M+MGTA+E VK P + VF+EDL QQAA L G+VNLGNTCY+ Sbjct 120 GQKLMMMGTADE--IVKAPEKGPVFMEDLPEEQQAANLG------YSAGLVNLGNTCYMN 171 Query 138 SVLQMLRPAKDFSDLLKNYISGGAATAQFAATGQQGALRRLSLALKDFYNQWDQTVEAVS 197 S +Q L + L NY S A T T L++A ++ +++ D++V+AV+ Sbjct 172 STMQCLISVPELKSELSNYQS--ARTKDVDQTSHM-----LTVATRELFSELDKSVKAVA 224 Query 198 PFLLVPTLREAYPQFSRRSTSQAGTTGVPMQQDAEECLSCLM 239 P L++ YPQF++ G MQQDAEEC + ++ Sbjct 225 PMPFWMVLQKKYPQFAQLH------NGNHMQQDAEECWTQML 260 Lambda K H 0.316 0.130 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 70473178052 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40