bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_4004_orf4 Length=281 Score E Sequences producing significant alignments: (Bits) Value 5833.PF14_0616 330 3e-89 > 5833.PF14_0616 Length=706 Score = 330 bits (847), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 160/274 (58%), Positives = 202/274 (73%), Gaps = 1/274 (0%) Query 1 KNPEKFQAICAKLPKGILLHGPPGTGKTLLARAIAGEAGVPFLHASGSDFEEMFVGVGAS 60 KN +KF I AKLPKGILL G PGTGKTL+ARAIAGEA VPFL ASGS+FEEMFVGVGA Sbjct 274 KNSDKFTKIGAKLPKGILLSGEPGTGKTLIARAIAGEANVPFLQASGSEFEEMFVGVGAR 333 Query 61 RIRSLFAAARAKGRCLLFIDEVDAVAGSRRIDTNGNFRQTLNQLLAELDGFKPTEGIVLI 120 RIR LF AA+ C++FIDE+DAV R N R TLNQLL ELDGF+ EGIV+I Sbjct 334 RIRELFQAAKKHAPCIVFIDEIDAVGSKRSSRDNSAVRMTLNQLLVELDGFEQNEGIVVI 393 Query 121 CATNLLGSIDSALLRPGRVDKTIFVPLPSLKERLEMLEYYASRVQLSPEVDLTLYASLTS 180 CATN S+D AL+RPGR+DKTI VPLP +K R E+L+ Y++++ LS +VDL + + T Sbjct 394 CATNFPQSLDKALVRPGRLDKTIVVPLPDIKGRYEILKMYSNKIVLSKDVDLHVLSRRTV 453 Query 181 GLTGAEVANLLNLAAIRAASSGKKEVTNAEIEDSFDRLKVGNKRSSASLQLEEKTVTAFH 240 G+TGA++ N+LN+AAI+ + GKK V IE +FDR+ VG +R S L EEK +TA+H Sbjct 454 GMTGADLNNILNIAAIKCSVEGKKSVDMNSIEQAFDRVVVGLQRKSP-LNEEEKNITAYH 512 Query 241 EGGHALMTLYSSHASSLHKASILFRGDALGVTWQ 274 EGGH L+ Y+ + +HKA+I+ RG +LGVTW+ Sbjct 513 EGGHTLVNFYTKGSDPVHKATIMPRGMSLGVTWK 546 Lambda K H 0.317 0.133 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 93396930975 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40