bitscore colors: <40, 40-50 , 50-80, 80-200, >200

BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: eggV2
2,483,276 sequences; 915,453,621 total letters
Query= Eten_3895_orf4
Length=164
Score E
Sequences producing significant alignments: (Bits) Value
5833.PF08_0019 193 2e-48
> 5833.PF08_0019
Length=323
Score = 193 bits (490), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 91/163 (55%), Positives = 110/163 (67%), Gaps = 0/163 (0%)
Query 1 DWVSCVRFFPFPKEPLIFLCGWDKLVKVWSLTTCKLPANLVGQTFVLYTVTVSPDGSLCA 60
DW++CVRF P P + +I CGWDKLVKVW+L C L NL G T VL TVT+SPDGSLCA
Sbjct 158 DWITCVRFSPSPNQAIIVSCGWDKLVKVWNLKNCDLNKNLEGHTGVLNTVTISPDGSLCA 217
Query 61 FGGKDGVTILWDLSEGKHLFSLDGSCPINSLGFFPCKYWVGGATDKFFKIWAPEKKKVLD 120
GGKDGV LWD+ EGKHL+SL+ INSL F PC YW+ ATD+F +IW E K ++
Sbjct 218 SGGKDGVAKLWDVKEGKHLYSLETGSTINSLCFSPCDYWLCAATDRFIRIWNLESKLIIS 277
Query 121 DISPDHPVKRGIPWGPFFNWSYEGRPLFIGSAGGNIPVYEVAE 163
+I P K G+PW WS G+ L+ GS GNI VYEV +
Sbjct 278 EIYPVKQSKIGVPWCTSLTWSANGQLLYCGSTDGNIYVYEVKK 320
Lambda K H
0.324 0.145 0.512
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 28631644438
Database: eggV2
Posted date: Dec 15, 2009 4:47 PM
Number of letters in database: 915,453,621
Number of sequences in database: 2,483,276
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40